HEADER TRANSFERASE 28-MAY-16 5K8B TITLE X-RAY STRUCTURE OF KDNA, 8-AMINO-3,8-DIDEOXY-ALPHA-D-MANNO- TITLE 2 OCTULOSONATE TRANSAMINASE, FROM SHEWANELLA ONEIDENSIS IN THE PRESENCE TITLE 3 OF THE EXTERNAL ALDIMINE WITH PLP AND GLUTAMATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 8-AMINO-3,8-DIDEOXY-ALPHA-D-MANNO-OCTULOSONATE COMPND 3 TRANSAMINASE; COMPND 4 CHAIN: A, B, C, D; COMPND 5 EC: 2.6.1.109; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS (STRAIN MR-1); SOURCE 3 ORGANISM_TAXID: 211586; SOURCE 4 STRAIN: MR-1; SOURCE 5 GENE: KDNA, SO_2476; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSAMINASE, 8-AMINO-3, 8-DIDEOXY-D-MANNO-OCTULOSONIC ACID, DEOXY KEYWDS 2 SUGAR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.M.HOLDEN,J.B.THODEN,T.R.ZACHMAN-BROCKMEYER REVDAT 6 27-SEP-23 5K8B 1 LINK REVDAT 5 25-DEC-19 5K8B 1 REMARK REVDAT 4 20-SEP-17 5K8B 1 JRNL REMARK REVDAT 3 24-AUG-16 5K8B 1 JRNL REVDAT 2 22-JUN-16 5K8B 1 JRNL REVDAT 1 15-JUN-16 5K8B 0 JRNL AUTH T.R.ZACHMAN-BROCKMEYER,J.B.THODEN,H.M.HOLDEN JRNL TITL STRUCTURES OF KDNB AND KDNA FROM SHEWANELLA ONEIDENSIS: KEY JRNL TITL 2 ENZYMES IN THE FORMATION OF JRNL TITL 3 8-AMINO-3,8-DIDEOXY-D-MANNO-OCTULOSONIC ACID. JRNL REF BIOCHEMISTRY V. 55 4485 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 27275764 JRNL DOI 10.1021/ACS.BIOCHEM.6B00439 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 78941 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4100 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5407 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 261 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 12192 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.31000 REMARK 3 B22 (A**2) : 2.69000 REMARK 3 B33 (A**2) : -0.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.81000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.265 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.203 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.163 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.549 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 12571 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 12004 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 16991 ; 2.126 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 27710 ; 1.183 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1580 ; 6.950 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 548 ;37.498 ;24.818 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2203 ;16.805 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 56 ;20.801 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1872 ; 0.147 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 14206 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 2770 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 6308 ; 2.010 ; 2.124 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 6307 ; 2.010 ; 2.123 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7880 ; 3.057 ; 3.176 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 7881 ; 3.057 ; 3.177 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 6263 ; 2.639 ; 2.402 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 6259 ; 2.639 ; 2.402 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 9102 ; 4.107 ; 3.484 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 14930 ; 5.305 ;16.863 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 14659 ; 5.263 ;16.799 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5K8B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000221886. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83041 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.25400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3FRK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16-21% PEG-3350, 100 MM MES, 200 MM REMARK 280 KCL, 150 MM MGCL2, 1 MM PLP, 50 MM MONOSODIUM GLUTAMATE, PH 6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 133.31400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.83750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 133.31400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.83750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 396 REMARK 465 GLU A 397 REMARK 465 HIS A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 465 HIS A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 465 MET B 1 REMARK 465 LEU B 396 REMARK 465 GLU B 397 REMARK 465 HIS B 398 REMARK 465 HIS B 399 REMARK 465 HIS B 400 REMARK 465 HIS B 401 REMARK 465 HIS B 402 REMARK 465 HIS B 403 REMARK 465 MET C 1 REMARK 465 LEU C 396 REMARK 465 GLU C 397 REMARK 465 HIS C 398 REMARK 465 HIS C 399 REMARK 465 HIS C 400 REMARK 465 HIS C 401 REMARK 465 HIS C 402 REMARK 465 HIS C 403 REMARK 465 MET D 1 REMARK 465 LEU D 396 REMARK 465 GLU D 397 REMARK 465 HIS D 398 REMARK 465 HIS D 399 REMARK 465 HIS D 400 REMARK 465 HIS D 401 REMARK 465 HIS D 402 REMARK 465 HIS D 403 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 186 NA PDG B 501 1.89 REMARK 500 O HOH B 733 O HOH B 763 2.01 REMARK 500 OE1 GLU D 387 O HOH D 601 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 26 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 33 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP A 141 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 LEU A 155 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 ASP A 183 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 216 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 286 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 286 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ILE A 304 CG1 - CB - CG2 ANGL. DEV. = -15.6 DEGREES REMARK 500 ASP A 314 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 367 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ILE A 373 CG1 - CB - CG2 ANGL. DEV. = -14.6 DEGREES REMARK 500 ARG A 385 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 VAL B 82 CB - CA - C ANGL. DEV. = -14.1 DEGREES REMARK 500 GLU B 142 OE1 - CD - OE2 ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG B 235 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 MET B 239 CA - CB - CG ANGL. DEV. = 13.0 DEGREES REMARK 500 MET B 239 CG - SD - CE ANGL. DEV. = -11.8 DEGREES REMARK 500 ARG B 278 NE - CZ - NH1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG B 278 NE - CZ - NH2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG B 300 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG C 33 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP C 35 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG C 40 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 VAL C 82 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 ASP C 183 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP C 205 CB - CG - OD1 ANGL. DEV. = 10.2 DEGREES REMARK 500 ASP C 205 CB - CG - OD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 LEU C 295 CA - CB - CG ANGL. DEV. = -14.5 DEGREES REMARK 500 ASP C 314 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG C 367 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG C 385 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG D 26 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 VAL D 52 CB - CA - C ANGL. DEV. = -11.9 DEGREES REMARK 500 LEU D 155 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 ASP D 183 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 MET D 239 CG - SD - CE ANGL. DEV. = -9.8 DEGREES REMARK 500 ASP D 286 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ILE D 304 CG1 - CB - CG2 ANGL. DEV. = -13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 28 -160.31 59.90 REMARK 500 HIS A 31 -52.04 -29.45 REMARK 500 TRP A 37 79.60 -116.25 REMARK 500 ASP A 107 -161.54 -114.42 REMARK 500 ALA A 161 25.57 -152.72 REMARK 500 ASP A 212 50.33 -151.45 REMARK 500 TRP A 330 65.71 -108.58 REMARK 500 ASN B 28 -157.27 57.38 REMARK 500 ASN B 51 51.98 39.93 REMARK 500 ASP B 107 -166.15 -114.08 REMARK 500 ALA B 161 22.94 -145.78 REMARK 500 THR B 198 147.34 -172.52 REMARK 500 ASP B 212 46.35 -143.61 REMARK 500 TRP B 330 62.89 -107.61 REMARK 500 ARG B 350 138.10 -26.22 REMARK 500 HIS C 21 -7.03 -141.92 REMARK 500 ASN C 28 -159.23 57.55 REMARK 500 ASP C 35 16.96 57.24 REMARK 500 TRP C 37 69.98 -117.76 REMARK 500 ASP C 107 -159.85 -120.77 REMARK 500 ALA C 161 26.63 -149.68 REMARK 500 ASP C 212 55.05 -155.63 REMARK 500 VAL C 313 78.29 -100.25 REMARK 500 ASN C 329 30.18 -95.73 REMARK 500 TRP C 330 63.84 -111.08 REMARK 500 ALA C 348 -94.90 -62.81 REMARK 500 ASN D 28 -153.32 59.72 REMARK 500 HIS D 31 -78.25 -33.67 REMARK 500 ASP D 35 27.50 48.62 REMARK 500 TRP D 37 73.42 -113.30 REMARK 500 THR D 86 169.86 177.36 REMARK 500 ASP D 107 -160.17 -122.39 REMARK 500 LYS D 139 83.13 -65.58 REMARK 500 ALA D 161 28.86 -158.91 REMARK 500 LYS D 167 57.27 34.89 REMARK 500 ASP D 212 50.78 -152.82 REMARK 500 HIS D 215 110.21 -37.66 REMARK 500 TRP D 330 60.64 -116.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 349 ARG B 350 149.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 502 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 634 O REMARK 620 2 HOH C 672 O 94.3 REMARK 620 3 HOH C 729 O 82.9 174.0 REMARK 620 4 HOH C 735 O 80.6 97.3 77.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PDG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PDG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PDG C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PDG D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL D 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5K8C RELATED DB: PDB DBREF 5K8B A 1 395 UNP Q8EEB1 KDNA_SHEON 1 395 DBREF 5K8B B 1 395 UNP Q8EEB1 KDNA_SHEON 1 395 DBREF 5K8B C 1 395 UNP Q8EEB1 KDNA_SHEON 1 395 DBREF 5K8B D 1 395 UNP Q8EEB1 KDNA_SHEON 1 395 SEQADV 5K8B LEU A 396 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B GLU A 397 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B HIS A 398 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B HIS A 399 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B HIS A 400 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B HIS A 401 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B HIS A 402 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B HIS A 403 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B LEU B 396 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B GLU B 397 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B HIS B 398 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B HIS B 399 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B HIS B 400 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B HIS B 401 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B HIS B 402 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B HIS B 403 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B LEU C 396 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B GLU C 397 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B HIS C 398 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B HIS C 399 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B HIS C 400 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B HIS C 401 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B HIS C 402 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B HIS C 403 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B LEU D 396 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B GLU D 397 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B HIS D 398 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B HIS D 399 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B HIS D 400 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B HIS D 401 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B HIS D 402 UNP Q8EEB1 EXPRESSION TAG SEQADV 5K8B HIS D 403 UNP Q8EEB1 EXPRESSION TAG SEQRES 1 A 403 MET PRO GLY PHE GLU LEU PHE GLY PRO GLU GLU LYS GLN SEQRES 2 A 403 GLU VAL ALA ASP VAL MET GLU HIS GLY PHE THR PHE ARG SEQRES 3 A 403 TYR ASN PHE ASP HIS MET ARG ASN ASP ARG TRP LYS THR SEQRES 4 A 403 ARG ASP MET GLU GLN LEU LEU CYS GLU LYS MET ASN VAL SEQRES 5 A 403 LYS HIS ALA HIS LEU LEU SER SER GLY THR ALA ALA LEU SEQRES 6 A 403 GLN THR ALA MET MET ALA ALA GLY ILE GLY ALA GLY ASP SEQRES 7 A 403 GLU VAL ILE VAL PRO PRO PHE THR PHE VAL ALA SER VAL SEQRES 8 A 403 GLU ALA ILE PHE MET ALA GLY ALA VAL PRO ILE PHE ALA SEQRES 9 A 403 GLU ILE ASP GLU THR LEU CYS LEU SER PRO GLU GLY ILE SEQRES 10 A 403 GLU ALA VAL ILE THR PRO ARG THR LYS ALA ILE ASN LEU SEQRES 11 A 403 VAL HIS MET CYS GLY SER MET ALA LYS MET ASP GLU ILE SEQRES 12 A 403 LYS ALA ILE CYS LYS LYS HIS ASN LEU VAL LEU LEU GLU SEQRES 13 A 403 ASP ALA CYS GLN ALA ILE GLY GLY SER TYR LYS GLY GLN SEQRES 14 A 403 ALA LEU GLY THR ILE GLY ASP VAL GLY CYS TYR SER PHE SEQRES 15 A 403 ASP SER VAL LYS THR ILE THR CYS GLY GLU GLY GLY ALA SEQRES 16 A 403 VAL ILE THR ASN ASN THR GLU ILE TYR ASP ASN ALA HIS SEQRES 17 A 403 MET PHE SER ASP HIS GLY HIS ASP HIS ILE GLY LYS ASP SEQRES 18 A 403 ARG GLY ALA GLU SER HIS PRO ILE MET GLY LEU ASN PHE SEQRES 19 A 403 ARG ILE SER GLU MET ASN ALA ALA LEU GLY LEU ALA GLN SEQRES 20 A 403 LEU ARG LYS LEU ASP THR ILE ILE ASP ILE GLN ARG LYS SEQRES 21 A 403 ASN LYS LYS ALA ILE LYS ASP ALA MET ALA SER ILE PRO SEQRES 22 A 403 GLU VAL SER PHE ARG GLU ILE PRO ASP PRO GLU GLY ASP SEQRES 23 A 403 SER ALA GLY PHE LEU SER PHE MET LEU PRO THR GLU ALA SEQRES 24 A 403 ARG THR GLN GLU ILE SER LYS LYS LEU ALA ALA ASN GLY SEQRES 25 A 403 VAL ASP GLY CYS PHE TYR TRP TYR VAL ASN ASN TRP HIS SEQRES 26 A 403 TYR LEU LYS ASN TRP LYS HIS ILE GLN GLU LEU LYS ALA SEQRES 27 A 403 PRO ALA ALA LEU PRO ILE THR LEU ILE ALA ASP ARG PRO SEQRES 28 A 403 ASP TYR THR GLN ILE SER VAL PRO LYS SER ASP ALA ILE SEQRES 29 A 403 MET SER ARG THR ILE SER MET LEU ILE LYS LEU SER TRP SEQRES 30 A 403 THR ASP ALA GLN ILE ALA GLU ARG ILE GLU ASN ILE LYS SEQRES 31 A 403 LYS ALA PHE ALA GLN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 403 MET PRO GLY PHE GLU LEU PHE GLY PRO GLU GLU LYS GLN SEQRES 2 B 403 GLU VAL ALA ASP VAL MET GLU HIS GLY PHE THR PHE ARG SEQRES 3 B 403 TYR ASN PHE ASP HIS MET ARG ASN ASP ARG TRP LYS THR SEQRES 4 B 403 ARG ASP MET GLU GLN LEU LEU CYS GLU LYS MET ASN VAL SEQRES 5 B 403 LYS HIS ALA HIS LEU LEU SER SER GLY THR ALA ALA LEU SEQRES 6 B 403 GLN THR ALA MET MET ALA ALA GLY ILE GLY ALA GLY ASP SEQRES 7 B 403 GLU VAL ILE VAL PRO PRO PHE THR PHE VAL ALA SER VAL SEQRES 8 B 403 GLU ALA ILE PHE MET ALA GLY ALA VAL PRO ILE PHE ALA SEQRES 9 B 403 GLU ILE ASP GLU THR LEU CYS LEU SER PRO GLU GLY ILE SEQRES 10 B 403 GLU ALA VAL ILE THR PRO ARG THR LYS ALA ILE ASN LEU SEQRES 11 B 403 VAL HIS MET CYS GLY SER MET ALA LYS MET ASP GLU ILE SEQRES 12 B 403 LYS ALA ILE CYS LYS LYS HIS ASN LEU VAL LEU LEU GLU SEQRES 13 B 403 ASP ALA CYS GLN ALA ILE GLY GLY SER TYR LYS GLY GLN SEQRES 14 B 403 ALA LEU GLY THR ILE GLY ASP VAL GLY CYS TYR SER PHE SEQRES 15 B 403 ASP SER VAL LYS THR ILE THR CYS GLY GLU GLY GLY ALA SEQRES 16 B 403 VAL ILE THR ASN ASN THR GLU ILE TYR ASP ASN ALA HIS SEQRES 17 B 403 MET PHE SER ASP HIS GLY HIS ASP HIS ILE GLY LYS ASP SEQRES 18 B 403 ARG GLY ALA GLU SER HIS PRO ILE MET GLY LEU ASN PHE SEQRES 19 B 403 ARG ILE SER GLU MET ASN ALA ALA LEU GLY LEU ALA GLN SEQRES 20 B 403 LEU ARG LYS LEU ASP THR ILE ILE ASP ILE GLN ARG LYS SEQRES 21 B 403 ASN LYS LYS ALA ILE LYS ASP ALA MET ALA SER ILE PRO SEQRES 22 B 403 GLU VAL SER PHE ARG GLU ILE PRO ASP PRO GLU GLY ASP SEQRES 23 B 403 SER ALA GLY PHE LEU SER PHE MET LEU PRO THR GLU ALA SEQRES 24 B 403 ARG THR GLN GLU ILE SER LYS LYS LEU ALA ALA ASN GLY SEQRES 25 B 403 VAL ASP GLY CYS PHE TYR TRP TYR VAL ASN ASN TRP HIS SEQRES 26 B 403 TYR LEU LYS ASN TRP LYS HIS ILE GLN GLU LEU LYS ALA SEQRES 27 B 403 PRO ALA ALA LEU PRO ILE THR LEU ILE ALA ASP ARG PRO SEQRES 28 B 403 ASP TYR THR GLN ILE SER VAL PRO LYS SER ASP ALA ILE SEQRES 29 B 403 MET SER ARG THR ILE SER MET LEU ILE LYS LEU SER TRP SEQRES 30 B 403 THR ASP ALA GLN ILE ALA GLU ARG ILE GLU ASN ILE LYS SEQRES 31 B 403 LYS ALA PHE ALA GLN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 403 MET PRO GLY PHE GLU LEU PHE GLY PRO GLU GLU LYS GLN SEQRES 2 C 403 GLU VAL ALA ASP VAL MET GLU HIS GLY PHE THR PHE ARG SEQRES 3 C 403 TYR ASN PHE ASP HIS MET ARG ASN ASP ARG TRP LYS THR SEQRES 4 C 403 ARG ASP MET GLU GLN LEU LEU CYS GLU LYS MET ASN VAL SEQRES 5 C 403 LYS HIS ALA HIS LEU LEU SER SER GLY THR ALA ALA LEU SEQRES 6 C 403 GLN THR ALA MET MET ALA ALA GLY ILE GLY ALA GLY ASP SEQRES 7 C 403 GLU VAL ILE VAL PRO PRO PHE THR PHE VAL ALA SER VAL SEQRES 8 C 403 GLU ALA ILE PHE MET ALA GLY ALA VAL PRO ILE PHE ALA SEQRES 9 C 403 GLU ILE ASP GLU THR LEU CYS LEU SER PRO GLU GLY ILE SEQRES 10 C 403 GLU ALA VAL ILE THR PRO ARG THR LYS ALA ILE ASN LEU SEQRES 11 C 403 VAL HIS MET CYS GLY SER MET ALA LYS MET ASP GLU ILE SEQRES 12 C 403 LYS ALA ILE CYS LYS LYS HIS ASN LEU VAL LEU LEU GLU SEQRES 13 C 403 ASP ALA CYS GLN ALA ILE GLY GLY SER TYR LYS GLY GLN SEQRES 14 C 403 ALA LEU GLY THR ILE GLY ASP VAL GLY CYS TYR SER PHE SEQRES 15 C 403 ASP SER VAL LYS THR ILE THR CYS GLY GLU GLY GLY ALA SEQRES 16 C 403 VAL ILE THR ASN ASN THR GLU ILE TYR ASP ASN ALA HIS SEQRES 17 C 403 MET PHE SER ASP HIS GLY HIS ASP HIS ILE GLY LYS ASP SEQRES 18 C 403 ARG GLY ALA GLU SER HIS PRO ILE MET GLY LEU ASN PHE SEQRES 19 C 403 ARG ILE SER GLU MET ASN ALA ALA LEU GLY LEU ALA GLN SEQRES 20 C 403 LEU ARG LYS LEU ASP THR ILE ILE ASP ILE GLN ARG LYS SEQRES 21 C 403 ASN LYS LYS ALA ILE LYS ASP ALA MET ALA SER ILE PRO SEQRES 22 C 403 GLU VAL SER PHE ARG GLU ILE PRO ASP PRO GLU GLY ASP SEQRES 23 C 403 SER ALA GLY PHE LEU SER PHE MET LEU PRO THR GLU ALA SEQRES 24 C 403 ARG THR GLN GLU ILE SER LYS LYS LEU ALA ALA ASN GLY SEQRES 25 C 403 VAL ASP GLY CYS PHE TYR TRP TYR VAL ASN ASN TRP HIS SEQRES 26 C 403 TYR LEU LYS ASN TRP LYS HIS ILE GLN GLU LEU LYS ALA SEQRES 27 C 403 PRO ALA ALA LEU PRO ILE THR LEU ILE ALA ASP ARG PRO SEQRES 28 C 403 ASP TYR THR GLN ILE SER VAL PRO LYS SER ASP ALA ILE SEQRES 29 C 403 MET SER ARG THR ILE SER MET LEU ILE LYS LEU SER TRP SEQRES 30 C 403 THR ASP ALA GLN ILE ALA GLU ARG ILE GLU ASN ILE LYS SEQRES 31 C 403 LYS ALA PHE ALA GLN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 403 MET PRO GLY PHE GLU LEU PHE GLY PRO GLU GLU LYS GLN SEQRES 2 D 403 GLU VAL ALA ASP VAL MET GLU HIS GLY PHE THR PHE ARG SEQRES 3 D 403 TYR ASN PHE ASP HIS MET ARG ASN ASP ARG TRP LYS THR SEQRES 4 D 403 ARG ASP MET GLU GLN LEU LEU CYS GLU LYS MET ASN VAL SEQRES 5 D 403 LYS HIS ALA HIS LEU LEU SER SER GLY THR ALA ALA LEU SEQRES 6 D 403 GLN THR ALA MET MET ALA ALA GLY ILE GLY ALA GLY ASP SEQRES 7 D 403 GLU VAL ILE VAL PRO PRO PHE THR PHE VAL ALA SER VAL SEQRES 8 D 403 GLU ALA ILE PHE MET ALA GLY ALA VAL PRO ILE PHE ALA SEQRES 9 D 403 GLU ILE ASP GLU THR LEU CYS LEU SER PRO GLU GLY ILE SEQRES 10 D 403 GLU ALA VAL ILE THR PRO ARG THR LYS ALA ILE ASN LEU SEQRES 11 D 403 VAL HIS MET CYS GLY SER MET ALA LYS MET ASP GLU ILE SEQRES 12 D 403 LYS ALA ILE CYS LYS LYS HIS ASN LEU VAL LEU LEU GLU SEQRES 13 D 403 ASP ALA CYS GLN ALA ILE GLY GLY SER TYR LYS GLY GLN SEQRES 14 D 403 ALA LEU GLY THR ILE GLY ASP VAL GLY CYS TYR SER PHE SEQRES 15 D 403 ASP SER VAL LYS THR ILE THR CYS GLY GLU GLY GLY ALA SEQRES 16 D 403 VAL ILE THR ASN ASN THR GLU ILE TYR ASP ASN ALA HIS SEQRES 17 D 403 MET PHE SER ASP HIS GLY HIS ASP HIS ILE GLY LYS ASP SEQRES 18 D 403 ARG GLY ALA GLU SER HIS PRO ILE MET GLY LEU ASN PHE SEQRES 19 D 403 ARG ILE SER GLU MET ASN ALA ALA LEU GLY LEU ALA GLN SEQRES 20 D 403 LEU ARG LYS LEU ASP THR ILE ILE ASP ILE GLN ARG LYS SEQRES 21 D 403 ASN LYS LYS ALA ILE LYS ASP ALA MET ALA SER ILE PRO SEQRES 22 D 403 GLU VAL SER PHE ARG GLU ILE PRO ASP PRO GLU GLY ASP SEQRES 23 D 403 SER ALA GLY PHE LEU SER PHE MET LEU PRO THR GLU ALA SEQRES 24 D 403 ARG THR GLN GLU ILE SER LYS LYS LEU ALA ALA ASN GLY SEQRES 25 D 403 VAL ASP GLY CYS PHE TYR TRP TYR VAL ASN ASN TRP HIS SEQRES 26 D 403 TYR LEU LYS ASN TRP LYS HIS ILE GLN GLU LEU LYS ALA SEQRES 27 D 403 PRO ALA ALA LEU PRO ILE THR LEU ILE ALA ASP ARG PRO SEQRES 28 D 403 ASP TYR THR GLN ILE SER VAL PRO LYS SER ASP ALA ILE SEQRES 29 D 403 MET SER ARG THR ILE SER MET LEU ILE LYS LEU SER TRP SEQRES 30 D 403 THR ASP ALA GLN ILE ALA GLU ARG ILE GLU ASN ILE LYS SEQRES 31 D 403 LYS ALA PHE ALA GLN LEU GLU HIS HIS HIS HIS HIS HIS HET PDG A 501 25 HET CL A 502 1 HET CL A 503 1 HET PDG B 501 25 HET CL B 502 1 HET PDG C 501 25 HET NA C 502 1 HET CL C 503 1 HET PDG D 501 25 HET CL D 502 1 HETNAM PDG N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN- HETNAM 2 PDG 4-YL}METHYL)-D-GLUTAMIC ACID HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN PDG N-PYRIDOXYL-D-GLUTAMIC ACID-5'-MONOPHOSPHATE FORMUL 5 PDG 4(C13 H19 N2 O9 P) FORMUL 6 CL 5(CL 1-) FORMUL 11 NA NA 1+ FORMUL 15 HOH *710(H2 O) HELIX 1 AA1 PRO A 2 PHE A 7 5 6 HELIX 2 AA2 GLY A 8 HIS A 21 1 14 HELIX 3 AA3 PHE A 29 ASN A 34 1 6 HELIX 4 AA4 TRP A 37 ASN A 51 1 15 HELIX 5 AA5 SER A 60 ALA A 72 1 13 HELIX 6 AA6 VAL A 88 ALA A 97 1 10 HELIX 7 AA7 SER A 113 ILE A 121 1 9 HELIX 8 AA8 MET A 133 SER A 136 5 4 HELIX 9 AA9 LYS A 139 HIS A 150 1 12 HELIX 10 AB1 ASN A 200 SER A 211 1 12 HELIX 11 AB2 SER A 237 ARG A 249 1 13 HELIX 12 AB3 LYS A 250 ALA A 270 1 21 HELIX 13 AB4 ASP A 282 ASP A 286 5 5 HELIX 14 AB5 THR A 297 ASN A 311 1 15 HELIX 15 AB6 TYR A 318 ASN A 322 5 5 HELIX 16 AB7 TYR A 326 ASN A 329 5 4 HELIX 17 AB8 TRP A 330 GLU A 335 1 6 HELIX 18 AB9 LEU A 342 ILE A 347 5 6 HELIX 19 AC1 ASP A 352 ILE A 356 5 5 HELIX 20 AC2 VAL A 358 SER A 366 1 9 HELIX 21 AC3 THR A 378 ALA A 394 1 17 HELIX 22 AC4 PRO B 2 PHE B 7 5 6 HELIX 23 AC5 GLY B 8 GLY B 22 1 15 HELIX 24 AC6 TRP B 37 ASN B 51 1 15 HELIX 25 AC7 SER B 60 ALA B 72 1 13 HELIX 26 AC8 VAL B 88 ALA B 97 1 10 HELIX 27 AC9 SER B 113 VAL B 120 1 8 HELIX 28 AD1 MET B 133 SER B 136 5 4 HELIX 29 AD2 LYS B 139 ASN B 151 1 13 HELIX 30 AD3 ASN B 200 SER B 211 1 12 HELIX 31 AD4 ASP B 221 GLU B 225 5 5 HELIX 32 AD5 SER B 237 ARG B 249 1 13 HELIX 33 AD6 LYS B 250 SER B 271 1 22 HELIX 34 AD7 ASP B 282 ASP B 286 5 5 HELIX 35 AD8 THR B 297 ASN B 311 1 15 HELIX 36 AD9 TYR B 318 ASN B 322 5 5 HELIX 37 AE1 TYR B 326 ASN B 329 5 4 HELIX 38 AE2 TRP B 330 GLU B 335 1 6 HELIX 39 AE3 LEU B 342 ILE B 347 5 6 HELIX 40 AE4 VAL B 358 SER B 366 1 9 HELIX 41 AE5 THR B 378 ALA B 394 1 17 HELIX 42 AE6 PRO C 2 PHE C 7 5 6 HELIX 43 AE7 GLY C 8 GLY C 22 1 15 HELIX 44 AE8 PHE C 29 ASN C 34 1 6 HELIX 45 AE9 TRP C 37 MET C 50 1 14 HELIX 46 AF1 SER C 60 GLY C 73 1 14 HELIX 47 AF2 VAL C 88 ALA C 97 1 10 HELIX 48 AF3 SER C 113 ALA C 119 1 7 HELIX 49 AF4 MET C 133 SER C 136 5 4 HELIX 50 AF5 LYS C 139 HIS C 150 1 12 HELIX 51 AF6 ASN C 200 SER C 211 1 12 HELIX 52 AF7 ASP C 221 GLU C 225 5 5 HELIX 53 AF8 SER C 237 LYS C 250 1 14 HELIX 54 AF9 LYS C 250 ALA C 270 1 21 HELIX 55 AG1 ASP C 282 ASP C 286 5 5 HELIX 56 AG2 THR C 297 ASN C 311 1 15 HELIX 57 AG3 TYR C 318 ASN C 322 5 5 HELIX 58 AG4 TYR C 326 ASN C 329 5 4 HELIX 59 AG5 TRP C 330 GLU C 335 1 6 HELIX 60 AG6 LEU C 342 ILE C 347 5 6 HELIX 61 AG7 VAL C 358 SER C 366 1 9 HELIX 62 AG8 THR C 378 ALA C 394 1 17 HELIX 63 AG9 PRO D 2 PHE D 7 5 6 HELIX 64 AH1 GLY D 8 GLY D 22 1 15 HELIX 65 AH2 PHE D 29 ASN D 34 1 6 HELIX 66 AH3 TRP D 37 MET D 50 1 14 HELIX 67 AH4 SER D 60 ALA D 72 1 13 HELIX 68 AH5 PHE D 87 ALA D 97 1 11 HELIX 69 AH6 SER D 113 ILE D 121 1 9 HELIX 70 AH7 MET D 133 SER D 136 5 4 HELIX 71 AH8 LYS D 139 ASN D 151 1 13 HELIX 72 AH9 ASN D 200 SER D 211 1 12 HELIX 73 AI1 SER D 237 LYS D 250 1 14 HELIX 74 AI2 LYS D 250 ALA D 270 1 21 HELIX 75 AI3 ASP D 282 ASP D 286 5 5 HELIX 76 AI4 THR D 297 ASN D 311 1 15 HELIX 77 AI5 TYR D 318 ASN D 322 5 5 HELIX 78 AI6 TYR D 326 ASN D 329 5 4 HELIX 79 AI7 TRP D 330 GLU D 335 1 6 HELIX 80 AI8 LEU D 342 ILE D 347 5 6 HELIX 81 AI9 ASP D 352 ILE D 356 5 5 HELIX 82 AJ1 VAL D 358 SER D 366 1 9 HELIX 83 AJ2 THR D 378 ALA D 394 1 17 SHEET 1 AA1 7 HIS A 54 LEU A 58 0 SHEET 2 AA1 7 GLY A 194 THR A 198 -1 O VAL A 196 N HIS A 56 SHEET 3 AA1 7 VAL A 177 SER A 181 -1 N GLY A 178 O ILE A 197 SHEET 4 AA1 7 VAL A 153 ASP A 157 1 N GLU A 156 O VAL A 177 SHEET 5 AA1 7 THR A 125 VAL A 131 1 N LEU A 130 O ASP A 157 SHEET 6 AA1 7 GLU A 79 VAL A 82 1 N ILE A 81 O ASN A 129 SHEET 7 AA1 7 VAL A 100 PHE A 103 1 O ILE A 102 N VAL A 80 SHEET 1 AA2 2 SER A 165 TYR A 166 0 SHEET 2 AA2 2 GLN A 169 ALA A 170 -1 O GLN A 169 N TYR A 166 SHEET 1 AA3 4 SER A 276 PHE A 277 0 SHEET 2 AA3 4 PHE A 290 MET A 294 -1 O MET A 294 N SER A 276 SHEET 3 AA3 4 THR A 368 LEU A 372 -1 O MET A 371 N LEU A 291 SHEET 4 AA3 4 CYS A 316 PHE A 317 -1 N PHE A 317 O SER A 370 SHEET 1 AA4 7 HIS B 54 LEU B 58 0 SHEET 2 AA4 7 GLY B 194 THR B 198 -1 O VAL B 196 N HIS B 56 SHEET 3 AA4 7 VAL B 177 SER B 181 -1 N GLY B 178 O ILE B 197 SHEET 4 AA4 7 VAL B 153 ASP B 157 1 N GLU B 156 O VAL B 177 SHEET 5 AA4 7 THR B 125 VAL B 131 1 N LYS B 126 O VAL B 153 SHEET 6 AA4 7 GLU B 79 VAL B 82 1 N ILE B 81 O ASN B 129 SHEET 7 AA4 7 VAL B 100 PHE B 103 1 O ILE B 102 N VAL B 82 SHEET 1 AA5 2 SER B 165 TYR B 166 0 SHEET 2 AA5 2 GLN B 169 ALA B 170 -1 O GLN B 169 N TYR B 166 SHEET 1 AA6 4 SER B 276 PHE B 277 0 SHEET 2 AA6 4 PHE B 290 MET B 294 -1 O MET B 294 N SER B 276 SHEET 3 AA6 4 THR B 368 LEU B 372 -1 O MET B 371 N LEU B 291 SHEET 4 AA6 4 CYS B 316 PHE B 317 -1 N PHE B 317 O SER B 370 SHEET 1 AA7 7 HIS C 54 LEU C 58 0 SHEET 2 AA7 7 GLY C 194 THR C 198 -1 O VAL C 196 N HIS C 56 SHEET 3 AA7 7 VAL C 177 SER C 181 -1 N GLY C 178 O ILE C 197 SHEET 4 AA7 7 VAL C 153 ASP C 157 1 N GLU C 156 O CYS C 179 SHEET 5 AA7 7 THR C 125 VAL C 131 1 N LEU C 130 O ASP C 157 SHEET 6 AA7 7 GLU C 79 VAL C 82 1 N ILE C 81 O ASN C 129 SHEET 7 AA7 7 VAL C 100 PHE C 103 1 O ILE C 102 N VAL C 80 SHEET 1 AA8 2 SER C 165 TYR C 166 0 SHEET 2 AA8 2 GLN C 169 ALA C 170 -1 O GLN C 169 N TYR C 166 SHEET 1 AA9 4 SER C 276 PHE C 277 0 SHEET 2 AA9 4 PHE C 290 MET C 294 -1 O MET C 294 N SER C 276 SHEET 3 AA9 4 THR C 368 LEU C 372 -1 O MET C 371 N LEU C 291 SHEET 4 AA9 4 CYS C 316 PHE C 317 -1 N PHE C 317 O SER C 370 SHEET 1 AB1 7 HIS D 54 LEU D 58 0 SHEET 2 AB1 7 GLY D 194 THR D 198 -1 O VAL D 196 N HIS D 56 SHEET 3 AB1 7 VAL D 177 SER D 181 -1 N GLY D 178 O ILE D 197 SHEET 4 AB1 7 VAL D 153 ASP D 157 1 N GLU D 156 O VAL D 177 SHEET 5 AB1 7 THR D 125 VAL D 131 1 N LEU D 130 O ASP D 157 SHEET 6 AB1 7 GLU D 79 VAL D 82 1 N ILE D 81 O ASN D 129 SHEET 7 AB1 7 VAL D 100 PHE D 103 1 O ILE D 102 N VAL D 80 SHEET 1 AB2 2 SER D 165 TYR D 166 0 SHEET 2 AB2 2 GLN D 169 ALA D 170 -1 O GLN D 169 N TYR D 166 SHEET 1 AB3 4 SER D 276 PHE D 277 0 SHEET 2 AB3 4 PHE D 290 MET D 294 -1 O MET D 294 N SER D 276 SHEET 3 AB3 4 THR D 368 LEU D 372 -1 O MET D 371 N LEU D 291 SHEET 4 AB3 4 CYS D 316 PHE D 317 -1 N PHE D 317 O SER D 370 LINK NA NA C 502 O HOH C 634 1555 1555 2.15 LINK NA NA C 502 O HOH C 672 1555 1555 2.14 LINK NA NA C 502 O HOH C 729 1555 1555 1.94 LINK NA NA C 502 O HOH C 735 1555 1555 2.57 SITE 1 AC1 18 SER A 60 GLY A 61 THR A 62 PHE A 87 SITE 2 AC1 18 VAL A 131 ASP A 157 CYS A 159 GLN A 160 SITE 3 AC1 18 SER A 181 ASP A 183 LYS A 186 HIS A 325 SITE 4 AC1 18 HOH A 613 HOH A 645 HOH A 686 ARG B 222 SITE 5 AC1 18 ASN B 233 ARG B 235 SITE 1 AC2 3 ASN A 322 TRP A 324 HIS A 325 SITE 1 AC3 2 LYS A 262 SER A 292 SITE 1 AC4 17 ARG A 222 ASN A 233 ARG A 235 HOH A 636 SITE 2 AC4 17 HOH A 713 SER B 60 GLY B 61 THR B 62 SITE 3 AC4 17 PHE B 87 ASP B 157 CYS B 159 GLN B 160 SITE 4 AC4 17 SER B 181 ASP B 183 LYS B 186 HIS B 325 SITE 5 AC4 17 HOH B 687 SITE 1 AC5 4 LYS B 262 SER B 292 HOH B 675 HOH B 678 SITE 1 AC6 17 SER C 60 GLY C 61 THR C 62 PHE C 87 SITE 2 AC6 17 VAL C 131 ASP C 157 CYS C 159 GLN C 160 SITE 3 AC6 17 SER C 181 ASP C 183 LYS C 186 HIS C 325 SITE 4 AC6 17 HOH C 615 HOH C 675 ARG D 222 ASN D 233 SITE 5 AC6 17 ARG D 235 SITE 1 AC7 5 HOH C 634 HOH C 672 HOH C 729 HOH C 735 SITE 2 AC7 5 HOH D 762 SITE 1 AC8 5 LYS C 262 ARG C 278 PHE C 290 SER C 292 SITE 2 AC8 5 HOH C 690 SITE 1 AC9 20 ARG C 222 ASN C 233 ARG C 235 SER D 60 SITE 2 AC9 20 GLY D 61 THR D 62 PHE D 87 VAL D 131 SITE 3 AC9 20 ASP D 157 CYS D 159 GLN D 160 SER D 181 SITE 4 AC9 20 ASP D 183 LYS D 186 GLY D 193 HIS D 325 SITE 5 AC9 20 HOH D 611 HOH D 644 HOH D 694 HOH D 713 SITE 1 AD1 3 LYS D 262 ARG D 278 SER D 292 CRYST1 266.628 61.675 99.636 90.00 102.03 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003751 0.000000 0.000799 0.00000 SCALE2 0.000000 0.016214 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010262 0.00000