data_5K8K # _entry.id 5K8K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.320 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5K8K WWPDB D_1000221898 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5K8K _pdbx_database_status.recvd_initial_deposition_date 2016-05-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cho, J.' 1 'Lee, C.-J.' 2 'Zhou, P.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Microbiol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2058-5276 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 1 _citation.language ? _citation.page_first 16154 _citation.page_last 16154 _citation.title 'Structure of the essential Haemophilus influenzae UDP-diacylglucosamine pyrophosphohydrolase LpxH in lipid A biosynthesis.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/nmicrobiol.2016.154 _citation.pdbx_database_id_PubMed 27780190 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cho, J.' 1 ? primary 'Lee, C.J.' 2 ? primary 'Zhao, J.' 3 ? primary 'Young, H.E.' 4 ? primary 'Zhou, P.' 5 ? # _cell.entry_id 5K8K _cell.length_a 99.840 _cell.length_b 99.840 _cell.length_c 200.850 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K8K _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'UDP-2,3-diacylglucosamine hydrolase' 30515.965 1 3.6.1.54 ? ? ? 2 non-polymer syn 'MANGANESE (II) ION' 54.938 2 ? ? ? ? 3 non-polymer syn ;(R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE ; 711.861 1 ? ? ? ? 4 non-polymer syn 'ACETATE ION' 59.044 2 ? ? ? ? 5 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 6 water nat water 18.015 19 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'UDP-2,3-diacylglucosamine diphosphatase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)KHSYFISDLHLSETQPELTALFVDF(MSE)QNLAPQAERLYILGDLFDFWIGDDEQSALIQQVKDLIKFVSDQGV QCYFQHGNRDFLIGERFSKETGAQLLPDYQLITLYDKKILLCHGDTLCIDDEAYQQFRRRVHQKWLQRLFLCLPLKVRVI IAEKIRAKSNQDKQAKSQEI(MSE)DVNQAFTAEKVQEFGVNLLIHGHTHREAIHQQEEFTRIVLGDWRKNYASILK (MSE)DESGEFGFIKDLEENLYFQSHHHHHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MKHSYFISDLHLSETQPELTALFVDFMQNLAPQAERLYILGDLFDFWIGDDEQSALIQQVKDLIKFVSDQGVQCYFQHGN RDFLIGERFSKETGAQLLPDYQLITLYDKKILLCHGDTLCIDDEAYQQFRRRVHQKWLQRLFLCLPLKVRVIIAEKIRAK SNQDKQAKSQEIMDVNQAFTAEKVQEFGVNLLIHGHTHREAIHQQEEFTRIVLGDWRKNYASILKMDESGEFGFIKDLEE NLYFQSHHHHHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 LYS n 1 3 HIS n 1 4 SER n 1 5 TYR n 1 6 PHE n 1 7 ILE n 1 8 SER n 1 9 ASP n 1 10 LEU n 1 11 HIS n 1 12 LEU n 1 13 SER n 1 14 GLU n 1 15 THR n 1 16 GLN n 1 17 PRO n 1 18 GLU n 1 19 LEU n 1 20 THR n 1 21 ALA n 1 22 LEU n 1 23 PHE n 1 24 VAL n 1 25 ASP n 1 26 PHE n 1 27 MSE n 1 28 GLN n 1 29 ASN n 1 30 LEU n 1 31 ALA n 1 32 PRO n 1 33 GLN n 1 34 ALA n 1 35 GLU n 1 36 ARG n 1 37 LEU n 1 38 TYR n 1 39 ILE n 1 40 LEU n 1 41 GLY n 1 42 ASP n 1 43 LEU n 1 44 PHE n 1 45 ASP n 1 46 PHE n 1 47 TRP n 1 48 ILE n 1 49 GLY n 1 50 ASP n 1 51 ASP n 1 52 GLU n 1 53 GLN n 1 54 SER n 1 55 ALA n 1 56 LEU n 1 57 ILE n 1 58 GLN n 1 59 GLN n 1 60 VAL n 1 61 LYS n 1 62 ASP n 1 63 LEU n 1 64 ILE n 1 65 LYS n 1 66 PHE n 1 67 VAL n 1 68 SER n 1 69 ASP n 1 70 GLN n 1 71 GLY n 1 72 VAL n 1 73 GLN n 1 74 CYS n 1 75 TYR n 1 76 PHE n 1 77 GLN n 1 78 HIS n 1 79 GLY n 1 80 ASN n 1 81 ARG n 1 82 ASP n 1 83 PHE n 1 84 LEU n 1 85 ILE n 1 86 GLY n 1 87 GLU n 1 88 ARG n 1 89 PHE n 1 90 SER n 1 91 LYS n 1 92 GLU n 1 93 THR n 1 94 GLY n 1 95 ALA n 1 96 GLN n 1 97 LEU n 1 98 LEU n 1 99 PRO n 1 100 ASP n 1 101 TYR n 1 102 GLN n 1 103 LEU n 1 104 ILE n 1 105 THR n 1 106 LEU n 1 107 TYR n 1 108 ASP n 1 109 LYS n 1 110 LYS n 1 111 ILE n 1 112 LEU n 1 113 LEU n 1 114 CYS n 1 115 HIS n 1 116 GLY n 1 117 ASP n 1 118 THR n 1 119 LEU n 1 120 CYS n 1 121 ILE n 1 122 ASP n 1 123 ASP n 1 124 GLU n 1 125 ALA n 1 126 TYR n 1 127 GLN n 1 128 GLN n 1 129 PHE n 1 130 ARG n 1 131 ARG n 1 132 ARG n 1 133 VAL n 1 134 HIS n 1 135 GLN n 1 136 LYS n 1 137 TRP n 1 138 LEU n 1 139 GLN n 1 140 ARG n 1 141 LEU n 1 142 PHE n 1 143 LEU n 1 144 CYS n 1 145 LEU n 1 146 PRO n 1 147 LEU n 1 148 LYS n 1 149 VAL n 1 150 ARG n 1 151 VAL n 1 152 ILE n 1 153 ILE n 1 154 ALA n 1 155 GLU n 1 156 LYS n 1 157 ILE n 1 158 ARG n 1 159 ALA n 1 160 LYS n 1 161 SER n 1 162 ASN n 1 163 GLN n 1 164 ASP n 1 165 LYS n 1 166 GLN n 1 167 ALA n 1 168 LYS n 1 169 SER n 1 170 GLN n 1 171 GLU n 1 172 ILE n 1 173 MSE n 1 174 ASP n 1 175 VAL n 1 176 ASN n 1 177 GLN n 1 178 ALA n 1 179 PHE n 1 180 THR n 1 181 ALA n 1 182 GLU n 1 183 LYS n 1 184 VAL n 1 185 GLN n 1 186 GLU n 1 187 PHE n 1 188 GLY n 1 189 VAL n 1 190 ASN n 1 191 LEU n 1 192 LEU n 1 193 ILE n 1 194 HIS n 1 195 GLY n 1 196 HIS n 1 197 THR n 1 198 HIS n 1 199 ARG n 1 200 GLU n 1 201 ALA n 1 202 ILE n 1 203 HIS n 1 204 GLN n 1 205 GLN n 1 206 GLU n 1 207 GLU n 1 208 PHE n 1 209 THR n 1 210 ARG n 1 211 ILE n 1 212 VAL n 1 213 LEU n 1 214 GLY n 1 215 ASP n 1 216 TRP n 1 217 ARG n 1 218 LYS n 1 219 ASN n 1 220 TYR n 1 221 ALA n 1 222 SER n 1 223 ILE n 1 224 LEU n 1 225 LYS n 1 226 MSE n 1 227 ASP n 1 228 GLU n 1 229 SER n 1 230 GLY n 1 231 GLU n 1 232 PHE n 1 233 GLY n 1 234 PHE n 1 235 ILE n 1 236 LYS n 1 237 ASP n 1 238 LEU n 1 239 GLU n 1 240 GLU n 1 241 ASN n 1 242 LEU n 1 243 TYR n 1 244 PHE n 1 245 GLN n 1 246 SER n 1 247 HIS n 1 248 HIS n 1 249 HIS n 1 250 HIS n 1 251 HIS n 1 252 HIS n 1 253 HIS n 1 254 HIS n 1 255 HIS n 1 256 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 256 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'lpxH, HI_0735' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 51907 / DSM 11121 / KW20 / Rd' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 71421 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LPXH_HAEIN _struct_ref.pdbx_db_accession P44046 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KHSYFISDLHLSETQPELTALFVDFMQNLAPQAERLYILGDLFDFWIGDDEQSALIQQVKDLIKFVSDQGVQCYFQHGNR DFLIGERFSKETGAQLLPDYQLITLYDKKILLCHGDTLCIDDEAYQQFRRRVHQKWLQRLFLCLPLKVRVIIAEKIRAKS NQDKQAKSQEIMDVNQAFTAEKVQEFGVNLLIHGHTHREAIHQQEEFTRIVLGDWRKNYASILKMDESGEFGFIKD ; _struct_ref.pdbx_align_begin 2 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5K8K _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 237 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P44046 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 237 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 237 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5K8K MSE A 1 ? UNP P44046 ? ? 'initiating methionine' 1 1 1 5K8K LEU A 238 ? UNP P44046 ? ? 'expression tag' 238 2 1 5K8K GLU A 239 ? UNP P44046 ? ? 'expression tag' 239 3 1 5K8K GLU A 240 ? UNP P44046 ? ? 'expression tag' 240 4 1 5K8K ASN A 241 ? UNP P44046 ? ? 'expression tag' 241 5 1 5K8K LEU A 242 ? UNP P44046 ? ? 'expression tag' 242 6 1 5K8K TYR A 243 ? UNP P44046 ? ? 'expression tag' 243 7 1 5K8K PHE A 244 ? UNP P44046 ? ? 'expression tag' 244 8 1 5K8K GLN A 245 ? UNP P44046 ? ? 'expression tag' 245 9 1 5K8K SER A 246 ? UNP P44046 ? ? 'expression tag' 246 10 1 5K8K HIS A 247 ? UNP P44046 ? ? 'expression tag' 247 11 1 5K8K HIS A 248 ? UNP P44046 ? ? 'expression tag' 248 12 1 5K8K HIS A 249 ? UNP P44046 ? ? 'expression tag' 249 13 1 5K8K HIS A 250 ? UNP P44046 ? ? 'expression tag' 250 14 1 5K8K HIS A 251 ? UNP P44046 ? ? 'expression tag' 251 15 1 5K8K HIS A 252 ? UNP P44046 ? ? 'expression tag' 252 16 1 5K8K HIS A 253 ? UNP P44046 ? ? 'expression tag' 253 17 1 5K8K HIS A 254 ? UNP P44046 ? ? 'expression tag' 254 18 1 5K8K HIS A 255 ? UNP P44046 ? ? 'expression tag' 255 19 1 5K8K HIS A 256 ? UNP P44046 ? ? 'expression tag' 256 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LP5 non-polymer . ;(R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE ; ? 'C34 H66 N O12 P' 711.861 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5K8K _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.44 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 64.23 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 288 _exptl_crystal_grow.temp_details 4.1 _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;100 mM NaCl, 10 mM HEPES, 35 mM sodium acetate pH 4.1, 2.2% PEG 4000, 0.3 mM sulfonyl piperazine, 0.7% DMSO, 22% glycerol, and ~3-4 mM n-decyl-beta-D-thiomaltopyranoside. ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-11-28 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5K8K _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 79.42 _reflns.d_resolution_high 2.550 _reflns.number_obs 12876 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.05200 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 27.5900 _reflns.B_iso_Wilson_estimate 51.07 _reflns.pdbx_redundancy ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.55 _reflns_shell.d_res_low 2.62 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.73900 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.360 _reflns_shell.pdbx_redundancy ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5K8K _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 12872 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.370 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 79.42 _refine.ls_d_res_high 2.55 _refine.ls_percent_reflns_obs 99.9 _refine.ls_R_factor_obs 0.195 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.192 _refine.ls_R_factor_R_free 0.227 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.930 _refine.ls_number_reflns_R_free 1278 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 58.77 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.290 _refine.pdbx_overall_phase_error 21.980 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1869 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 70 _refine_hist.number_atoms_solvent 19 _refine_hist.number_atoms_total 1958 _refine_hist.d_res_high 2.55 _refine_hist.d_res_low 79.42 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.004 ? ? 2031 'X-RAY DIFFRACTION' ? f_angle_d 0.617 ? ? 2732 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 11.123 ? ? 1196 'X-RAY DIFFRACTION' ? f_chiral_restr 0.042 ? ? 301 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 346 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.5500 2.6521 1237 0.2711 100.00 0.2985 . . 150 . . . . 'X-RAY DIFFRACTION' . 2.6521 2.7728 1279 0.2283 100.00 0.2935 . . 152 . . . . 'X-RAY DIFFRACTION' . 2.7728 2.9190 1271 0.2204 100.00 0.2444 . . 134 . . . . 'X-RAY DIFFRACTION' . 2.9190 3.1019 1258 0.2058 100.00 0.2698 . . 155 . . . . 'X-RAY DIFFRACTION' . 3.1019 3.3414 1276 0.1936 100.00 0.2373 . . 146 . . . . 'X-RAY DIFFRACTION' . 3.3414 3.6777 1293 0.1742 100.00 0.2084 . . 128 . . . . 'X-RAY DIFFRACTION' . 3.6777 4.2098 1290 0.1768 100.00 0.2195 . . 142 . . . . 'X-RAY DIFFRACTION' . 4.2098 5.3038 1304 0.1635 100.00 0.2142 . . 139 . . . . 'X-RAY DIFFRACTION' . 5.3038 79.4562 1386 0.2076 100.00 0.2015 . . 132 . . . . # _struct.entry_id 5K8K _struct.title 'Structure of the Haemophilus influenzae LpxH-lipid X complex' _struct.pdbx_descriptor 'UDP-2,3-diacylglucosamine hydrolase (E.C.3.6.1.54)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5K8K _struct_keywords.text 'LpxH, lipid X, UDP-diacylglucosamine, lipid A, LPS, lipopolysaccharide, antibiotic, calcineurin-like phosphoesterase, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 5 ? I N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLN A 16 ? LEU A 30 ? GLN A 16 LEU A 30 1 ? 15 HELX_P HELX_P2 AA2 ALA A 31 ? ALA A 34 ? ALA A 31 ALA A 34 5 ? 4 HELX_P HELX_P3 AA3 SER A 54 ? GLN A 70 ? SER A 54 GLN A 70 1 ? 17 HELX_P HELX_P4 AA4 GLY A 86 ? GLY A 94 ? GLY A 86 GLY A 94 1 ? 9 HELX_P HELX_P5 AA5 GLY A 116 ? CYS A 120 ? GLY A 116 CYS A 120 5 ? 5 HELX_P HELX_P6 AA6 GLU A 124 ? HIS A 134 ? GLU A 124 HIS A 134 1 ? 11 HELX_P HELX_P7 AA7 TRP A 137 ? CYS A 144 ? TRP A 137 CYS A 144 1 ? 8 HELX_P HELX_P8 AA8 LEU A 147 ? ALA A 167 ? LEU A 147 ALA A 167 1 ? 21 HELX_P HELX_P9 AA9 GLN A 170 ? ASP A 174 ? GLN A 170 ASP A 174 5 ? 5 HELX_P HELX_P10 AB1 ASN A 176 ? GLY A 188 ? ASN A 176 GLY A 188 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A MSE 1 C ? ? ? 1_555 A LYS 2 N ? ? A MSE 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.332 ? metalc1 metalc ? ? A ASP 9 OD1 ? ? ? 1_555 C MN . MN ? ? A ASP 9 A MN 302 1_555 ? ? ? ? ? ? ? 2.166 ? metalc2 metalc ? ? A HIS 11 NE2 ? ? ? 1_555 C MN . MN ? ? A HIS 11 A MN 302 1_555 ? ? ? ? ? ? ? 2.324 ? covale2 covale both ? A PHE 26 C ? ? ? 1_555 A MSE 27 N ? ? A PHE 26 A MSE 27 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale both ? A MSE 27 C ? ? ? 1_555 A GLN 28 N ? ? A MSE 27 A GLN 28 1_555 ? ? ? ? ? ? ? 1.333 ? metalc3 metalc ? ? A ASP 42 OD2 ? ? ? 1_555 B MN . MN ? ? A ASP 42 A MN 301 1_555 ? ? ? ? ? ? ? 2.144 ? metalc4 metalc ? ? A ASP 42 OD2 ? ? ? 1_555 C MN . MN ? ? A ASP 42 A MN 302 1_555 ? ? ? ? ? ? ? 2.335 ? metalc5 metalc ? ? A ASN 80 OD1 ? ? ? 1_555 B MN . MN ? ? A ASN 80 A MN 301 1_555 ? ? ? ? ? ? ? 2.004 ? metalc6 metalc ? ? A HIS 115 NE2 ? ? ? 1_555 B MN . MN ? ? A HIS 115 A MN 301 1_555 ? ? ? ? ? ? ? 2.308 ? covale4 covale both ? A ILE 172 C ? ? ? 1_555 A MSE 173 N ? ? A ILE 172 A MSE 173 1_555 ? ? ? ? ? ? ? 1.329 ? covale5 covale both ? A MSE 173 C ? ? ? 1_555 A ASP 174 N ? ? A MSE 173 A ASP 174 1_555 ? ? ? ? ? ? ? 1.328 ? metalc7 metalc ? ? A HIS 196 ND1 ? ? ? 1_555 B MN . MN ? ? A HIS 196 A MN 301 1_555 ? ? ? ? ? ? ? 2.091 ? covale6 covale both ? A LYS 225 C ? ? ? 1_555 A MSE 226 N A ? A LYS 225 A MSE 226 1_555 ? ? ? ? ? ? ? 1.329 ? covale7 covale both ? A LYS 225 C ? ? ? 1_555 A MSE 226 N B ? A LYS 225 A MSE 226 1_555 ? ? ? ? ? ? ? 1.330 ? covale8 covale both ? A MSE 226 C A ? ? 1_555 A ASP 227 N ? ? A MSE 226 A ASP 227 1_555 ? ? ? ? ? ? ? 1.331 ? covale9 covale both ? A MSE 226 C B ? ? 1_555 A ASP 227 N ? ? A MSE 226 A ASP 227 1_555 ? ? ? ? ? ? ? 1.329 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLN A 96 ? LEU A 98 ? GLN A 96 LEU A 98 AA1 2 GLN A 73 ? GLN A 77 ? GLN A 73 GLN A 77 AA1 3 ARG A 36 ? LEU A 40 ? ARG A 36 LEU A 40 AA1 4 HIS A 3 ? ILE A 7 ? HIS A 3 ILE A 7 AA1 5 LEU A 224 ? ASP A 227 ? LEU A 224 ASP A 227 AA1 6 PHE A 232 ? PHE A 234 ? PHE A 232 PHE A 234 AA2 1 TYR A 101 ? LEU A 106 ? TYR A 101 LEU A 106 AA2 2 LYS A 109 ? CYS A 114 ? LYS A 109 CYS A 114 AA2 3 LEU A 191 ? HIS A 194 ? LEU A 191 HIS A 194 AA2 4 THR A 209 ? VAL A 212 ? THR A 209 VAL A 212 AA2 5 ALA A 201 ? GLN A 204 ? ALA A 201 GLN A 204 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O GLN A 96 ? O GLN A 96 N PHE A 76 ? N PHE A 76 AA1 2 3 O GLN A 77 ? O GLN A 77 N ILE A 39 ? N ILE A 39 AA1 3 4 O LEU A 40 ? O LEU A 40 N ILE A 7 ? N ILE A 7 AA1 4 5 N SER A 4 ? N SER A 4 O MSE A 226 ? O MSE A 226 AA1 5 6 N LYS A 225 ? N LYS A 225 O GLY A 233 ? O GLY A 233 AA2 1 2 N ILE A 104 ? N ILE A 104 O ILE A 111 ? O ILE A 111 AA2 2 3 N LEU A 112 ? N LEU A 112 O ILE A 193 ? O ILE A 193 AA2 3 4 N LEU A 192 ? N LEU A 192 O ILE A 211 ? O ILE A 211 AA2 4 5 O VAL A 212 ? O VAL A 212 N ALA A 201 ? N ALA A 201 # _atom_sites.entry_id 5K8K _atom_sites.fract_transf_matrix[1][1] 0.010016 _atom_sites.fract_transf_matrix[1][2] 0.005783 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011566 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004979 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL MN N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 1 MSE MSE A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 HIS 3 3 3 HIS HIS A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 TYR 5 5 5 TYR TYR A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 HIS 11 11 11 HIS HIS A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 PHE 26 26 26 PHE PHE A . n A 1 27 MSE 27 27 27 MSE MSE A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 GLN 33 33 33 GLN GLN A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 TYR 38 38 38 TYR TYR A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 ASP 42 42 42 ASP ASP A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 TRP 47 47 47 TRP TRP A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 ILE 57 57 57 ILE ILE A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 ASP 62 62 62 ASP ASP A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 PHE 66 66 66 PHE PHE A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 ASP 69 69 69 ASP ASP A . n A 1 70 GLN 70 70 70 GLN GLN A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 GLN 73 73 73 GLN GLN A . n A 1 74 CYS 74 74 74 CYS CYS A . n A 1 75 TYR 75 75 75 TYR TYR A . n A 1 76 PHE 76 76 76 PHE PHE A . n A 1 77 GLN 77 77 77 GLN GLN A . n A 1 78 HIS 78 78 78 HIS HIS A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 ASP 82 82 82 ASP ASP A . n A 1 83 PHE 83 83 83 PHE PHE A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 PHE 89 89 89 PHE PHE A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 GLN 96 96 96 GLN GLN A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 PRO 99 99 99 PRO PRO A . n A 1 100 ASP 100 100 100 ASP ASP A . n A 1 101 TYR 101 101 101 TYR TYR A . n A 1 102 GLN 102 102 102 GLN GLN A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 THR 105 105 105 THR THR A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 TYR 107 107 107 TYR TYR A . n A 1 108 ASP 108 108 108 ASP ASP A . n A 1 109 LYS 109 109 109 LYS LYS A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 ILE 111 111 111 ILE ILE A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 CYS 114 114 114 CYS CYS A . n A 1 115 HIS 115 115 115 HIS HIS A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 ASP 117 117 117 ASP ASP A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 CYS 120 120 120 CYS CYS A . n A 1 121 ILE 121 121 121 ILE ILE A . n A 1 122 ASP 122 122 122 ASP ASP A . n A 1 123 ASP 123 123 123 ASP ASP A . n A 1 124 GLU 124 124 124 GLU GLU A . n A 1 125 ALA 125 125 125 ALA ALA A . n A 1 126 TYR 126 126 126 TYR TYR A . n A 1 127 GLN 127 127 127 GLN GLN A . n A 1 128 GLN 128 128 128 GLN GLN A . n A 1 129 PHE 129 129 129 PHE PHE A . n A 1 130 ARG 130 130 130 ARG ARG A . n A 1 131 ARG 131 131 131 ARG ARG A . n A 1 132 ARG 132 132 132 ARG ARG A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 HIS 134 134 134 HIS HIS A . n A 1 135 GLN 135 135 135 GLN GLN A . n A 1 136 LYS 136 136 136 LYS LYS A . n A 1 137 TRP 137 137 137 TRP TRP A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 GLN 139 139 139 GLN GLN A . n A 1 140 ARG 140 140 140 ARG ARG A . n A 1 141 LEU 141 141 141 LEU LEU A . n A 1 142 PHE 142 142 142 PHE PHE A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 CYS 144 144 144 CYS CYS A . n A 1 145 LEU 145 145 145 LEU LEU A . n A 1 146 PRO 146 146 146 PRO PRO A . n A 1 147 LEU 147 147 147 LEU LEU A . n A 1 148 LYS 148 148 148 LYS LYS A . n A 1 149 VAL 149 149 149 VAL VAL A . n A 1 150 ARG 150 150 150 ARG ARG A . n A 1 151 VAL 151 151 151 VAL VAL A . n A 1 152 ILE 152 152 152 ILE ILE A . n A 1 153 ILE 153 153 153 ILE ILE A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 GLU 155 155 155 GLU GLU A . n A 1 156 LYS 156 156 156 LYS LYS A . n A 1 157 ILE 157 157 157 ILE ILE A . n A 1 158 ARG 158 158 158 ARG ARG A . n A 1 159 ALA 159 159 159 ALA ALA A . n A 1 160 LYS 160 160 160 LYS LYS A . n A 1 161 SER 161 161 161 SER SER A . n A 1 162 ASN 162 162 162 ASN ASN A . n A 1 163 GLN 163 163 163 GLN GLN A . n A 1 164 ASP 164 164 164 ASP ASP A . n A 1 165 LYS 165 165 165 LYS LYS A . n A 1 166 GLN 166 166 166 GLN GLN A . n A 1 167 ALA 167 167 167 ALA ALA A . n A 1 168 LYS 168 168 168 LYS LYS A . n A 1 169 SER 169 169 169 SER SER A . n A 1 170 GLN 170 170 170 GLN GLN A . n A 1 171 GLU 171 171 171 GLU GLU A . n A 1 172 ILE 172 172 172 ILE ILE A . n A 1 173 MSE 173 173 173 MSE MSE A . n A 1 174 ASP 174 174 174 ASP ASP A . n A 1 175 VAL 175 175 175 VAL VAL A . n A 1 176 ASN 176 176 176 ASN ASN A . n A 1 177 GLN 177 177 177 GLN GLN A . n A 1 178 ALA 178 178 178 ALA ALA A . n A 1 179 PHE 179 179 179 PHE PHE A . n A 1 180 THR 180 180 180 THR THR A . n A 1 181 ALA 181 181 181 ALA ALA A . n A 1 182 GLU 182 182 182 GLU GLU A . n A 1 183 LYS 183 183 183 LYS LYS A . n A 1 184 VAL 184 184 184 VAL VAL A . n A 1 185 GLN 185 185 185 GLN GLN A . n A 1 186 GLU 186 186 186 GLU GLU A . n A 1 187 PHE 187 187 187 PHE PHE A . n A 1 188 GLY 188 188 188 GLY GLY A . n A 1 189 VAL 189 189 189 VAL VAL A . n A 1 190 ASN 190 190 190 ASN ASN A . n A 1 191 LEU 191 191 191 LEU LEU A . n A 1 192 LEU 192 192 192 LEU LEU A . n A 1 193 ILE 193 193 193 ILE ILE A . n A 1 194 HIS 194 194 194 HIS HIS A . n A 1 195 GLY 195 195 195 GLY GLY A . n A 1 196 HIS 196 196 196 HIS HIS A . n A 1 197 THR 197 197 197 THR THR A . n A 1 198 HIS 198 198 198 HIS HIS A . n A 1 199 ARG 199 199 199 ARG ARG A . n A 1 200 GLU 200 200 200 GLU GLU A . n A 1 201 ALA 201 201 201 ALA ALA A . n A 1 202 ILE 202 202 202 ILE ILE A . n A 1 203 HIS 203 203 203 HIS HIS A . n A 1 204 GLN 204 204 204 GLN GLN A . n A 1 205 GLN 205 205 205 GLN GLN A . n A 1 206 GLU 206 206 206 GLU GLU A . n A 1 207 GLU 207 207 207 GLU GLU A . n A 1 208 PHE 208 208 208 PHE PHE A . n A 1 209 THR 209 209 209 THR THR A . n A 1 210 ARG 210 210 210 ARG ARG A . n A 1 211 ILE 211 211 211 ILE ILE A . n A 1 212 VAL 212 212 212 VAL VAL A . n A 1 213 LEU 213 213 213 LEU LEU A . n A 1 214 GLY 214 214 214 GLY GLY A . n A 1 215 ASP 215 215 215 ASP ASP A . n A 1 216 TRP 216 216 216 TRP TRP A . n A 1 217 ARG 217 217 217 ARG ARG A . n A 1 218 LYS 218 218 218 LYS LYS A . n A 1 219 ASN 219 219 219 ASN ASN A . n A 1 220 TYR 220 220 220 TYR TYR A . n A 1 221 ALA 221 221 221 ALA ALA A . n A 1 222 SER 222 222 222 SER SER A . n A 1 223 ILE 223 223 223 ILE ILE A . n A 1 224 LEU 224 224 224 LEU LEU A . n A 1 225 LYS 225 225 225 LYS LYS A . n A 1 226 MSE 226 226 226 MSE MSE A . n A 1 227 ASP 227 227 227 ASP ASP A . n A 1 228 GLU 228 228 228 GLU GLU A . n A 1 229 SER 229 229 229 SER SER A . n A 1 230 GLY 230 230 230 GLY GLY A . n A 1 231 GLU 231 231 231 GLU GLU A . n A 1 232 PHE 232 232 232 PHE PHE A . n A 1 233 GLY 233 233 233 GLY GLY A . n A 1 234 PHE 234 234 234 PHE PHE A . n A 1 235 ILE 235 235 235 ILE ILE A . n A 1 236 LYS 236 236 236 LYS LYS A . n A 1 237 ASP 237 237 237 ASP ASP A . n A 1 238 LEU 238 238 ? ? ? A . n A 1 239 GLU 239 239 ? ? ? A . n A 1 240 GLU 240 240 ? ? ? A . n A 1 241 ASN 241 241 ? ? ? A . n A 1 242 LEU 242 242 ? ? ? A . n A 1 243 TYR 243 243 ? ? ? A . n A 1 244 PHE 244 244 ? ? ? A . n A 1 245 GLN 245 245 ? ? ? A . n A 1 246 SER 246 246 ? ? ? A . n A 1 247 HIS 247 247 ? ? ? A . n A 1 248 HIS 248 248 ? ? ? A . n A 1 249 HIS 249 249 ? ? ? A . n A 1 250 HIS 250 250 ? ? ? A . n A 1 251 HIS 251 251 ? ? ? A . n A 1 252 HIS 252 252 ? ? ? A . n A 1 253 HIS 253 253 ? ? ? A . n A 1 254 HIS 254 254 ? ? ? A . n A 1 255 HIS 255 255 ? ? ? A . n A 1 256 HIS 256 256 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN 1 301 301 MN MN A . C 2 MN 1 302 302 MN MN A . D 3 LP5 1 303 303 LP5 LP5 A . E 4 ACT 1 304 304 ACT ACT A . F 4 ACT 1 305 305 ACT ACT A . G 5 GOL 1 306 306 GOL GOL A . H 5 GOL 1 307 307 GOL GOL A . I 6 HOH 1 401 401 HOH HOH A . I 6 HOH 2 402 402 HOH HOH A . I 6 HOH 3 403 403 HOH HOH A . I 6 HOH 4 404 404 HOH HOH A . I 6 HOH 5 405 405 HOH HOH A . I 6 HOH 6 406 406 HOH HOH A . I 6 HOH 7 407 407 HOH HOH A . I 6 HOH 8 408 408 HOH HOH A . I 6 HOH 9 409 409 HOH HOH A . I 6 HOH 10 410 410 HOH HOH A . I 6 HOH 11 411 411 HOH HOH A . I 6 HOH 12 412 412 HOH HOH A . I 6 HOH 13 413 413 HOH HOH A . I 6 HOH 14 414 414 HOH HOH A . I 6 HOH 15 415 415 HOH HOH A . I 6 HOH 16 416 416 HOH HOH A . I 6 HOH 17 417 417 HOH HOH A . I 6 HOH 18 418 418 HOH HOH A . I 6 HOH 19 419 419 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 27 A MSE 27 ? MET 'modified residue' 2 A MSE 173 A MSE 173 ? MET 'modified residue' 3 A MSE 226 A MSE 226 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 9 ? A ASP 9 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 NE2 ? A HIS 11 ? A HIS 11 ? 1_555 93.4 ? 2 OD1 ? A ASP 9 ? A ASP 9 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 OD2 ? A ASP 42 ? A ASP 42 ? 1_555 82.0 ? 3 NE2 ? A HIS 11 ? A HIS 11 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 OD2 ? A ASP 42 ? A ASP 42 ? 1_555 107.5 ? 4 OD2 ? A ASP 42 ? A ASP 42 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 OD1 ? A ASN 80 ? A ASN 80 ? 1_555 96.8 ? 5 OD2 ? A ASP 42 ? A ASP 42 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 NE2 ? A HIS 115 ? A HIS 115 ? 1_555 85.8 ? 6 OD1 ? A ASN 80 ? A ASN 80 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 NE2 ? A HIS 115 ? A HIS 115 ? 1_555 80.9 ? 7 OD2 ? A ASP 42 ? A ASP 42 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 ND1 ? A HIS 196 ? A HIS 196 ? 1_555 175.1 ? 8 OD1 ? A ASN 80 ? A ASN 80 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 ND1 ? A HIS 196 ? A HIS 196 ? 1_555 83.9 ? 9 NE2 ? A HIS 115 ? A HIS 115 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 ND1 ? A HIS 196 ? A HIS 196 ? 1_555 99.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-08-10 2 'Structure model' 1 1 2016-09-21 3 'Structure model' 1 2 2016-11-09 4 'Structure model' 1 3 2017-09-20 5 'Structure model' 1 4 2019-12-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Author supporting evidence' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Author supporting evidence' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_audit_support 2 4 'Structure model' pdbx_struct_oper_list 3 5 'Structure model' pdbx_audit_support # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_audit_support.funding_organization' 2 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 3 5 'Structure model' '_pdbx_audit_support.funding_organization' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -8.3584 33.5248 18.3413 0.4562 0.4218 0.3587 0.1552 0.0033 -0.0634 2.1862 2.2918 3.9126 -0.5462 0.7750 -0.4168 -0.3205 -0.4972 0.2514 0.6726 0.2604 -0.1405 -0.0482 0.2000 0.0501 'X-RAY DIFFRACTION' 2 ? refined -1.4329 14.5493 14.5872 0.8510 0.5736 0.5815 0.3945 0.0225 0.0225 0.4047 0.9692 2.5894 -0.4487 -0.1668 -0.3061 -0.1445 -0.0801 -0.3623 0.1190 0.2699 -0.1868 1.2075 0.6808 -0.0887 'X-RAY DIFFRACTION' 3 ? refined -2.7889 28.7967 -2.4740 0.3827 0.6435 0.4916 0.1500 0.1045 -0.0090 4.1649 2.5840 0.3074 -2.1575 -0.3415 0.1253 -0.0906 0.6040 0.3641 -0.2277 -0.0087 -0.8881 0.3178 0.9050 0.0595 'X-RAY DIFFRACTION' 4 ? refined -2.3236 38.2346 4.2064 0.2849 0.4365 0.5592 -0.0545 0.0522 0.0127 2.2400 2.0669 2.1370 0.9691 -0.6597 1.3482 -0.1384 0.3429 0.2974 -0.1241 0.1254 -0.5715 -0.3344 0.8682 -0.0487 'X-RAY DIFFRACTION' 5 ? refined -4.9025 46.9581 12.0585 0.6185 0.4363 0.6960 -0.0212 -0.0592 -0.0471 0.3138 2.3987 1.6515 -0.4225 -0.5274 -0.3560 -0.1114 0.0543 0.3835 -0.0448 0.1502 0.0432 -0.6887 0.3765 -0.0239 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;CHAIN 'A' AND (RESID 1 THROUGH 123 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;CHAIN 'A' AND (RESID 124 THROUGH 166 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;CHAIN 'A' AND (RESID 167 THROUGH 187 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;CHAIN 'A' AND (RESID 188 THROUGH 217 ) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;CHAIN 'A' AND (RESID 218 THROUGH 237 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10.1_2155 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.1.27 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? 'VERSION Oct 15, 2015' 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.20 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? 'Oct 15, 2015' 5 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10.1-2155 6 # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 650 ; HELIX DETERMINATION METHOD: AUTHOR DETERMINED ; 700 ; SHEET DETERMINATION METHOD: AUTHOR DETERMINED ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 40 ? ? -98.31 55.80 2 1 HIS A 196 ? ? 72.33 -45.24 3 1 HIS A 198 ? ? 72.71 -24.25 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 16 ? OE1 ? A GLN 16 OE1 2 1 Y 1 A GLN 16 ? NE2 ? A GLN 16 NE2 3 1 Y 1 A GLU 18 ? CG ? A GLU 18 CG 4 1 Y 1 A GLU 18 ? CD ? A GLU 18 CD 5 1 Y 1 A GLU 18 ? OE1 ? A GLU 18 OE1 6 1 Y 1 A GLU 18 ? OE2 ? A GLU 18 OE2 7 1 Y 1 A ASP 25 ? CG ? A ASP 25 CG 8 1 Y 1 A ASP 25 ? OD1 ? A ASP 25 OD1 9 1 Y 1 A ASP 25 ? OD2 ? A ASP 25 OD2 10 1 Y 1 A GLN 53 ? OE1 ? A GLN 53 OE1 11 1 Y 1 A GLN 53 ? NE2 ? A GLN 53 NE2 12 1 Y 1 A PHE 66 ? CG ? A PHE 66 CG 13 1 Y 1 A PHE 66 ? CD1 ? A PHE 66 CD1 14 1 Y 1 A PHE 66 ? CD2 ? A PHE 66 CD2 15 1 Y 1 A PHE 66 ? CE1 ? A PHE 66 CE1 16 1 Y 1 A PHE 66 ? CE2 ? A PHE 66 CE2 17 1 Y 1 A PHE 66 ? CZ ? A PHE 66 CZ 18 1 Y 1 A GLU 87 ? CG ? A GLU 87 CG 19 1 Y 1 A GLU 87 ? CD ? A GLU 87 CD 20 1 Y 1 A GLU 87 ? OE1 ? A GLU 87 OE1 21 1 Y 1 A GLU 87 ? OE2 ? A GLU 87 OE2 22 1 Y 1 A LYS 91 ? CD ? A LYS 91 CD 23 1 Y 1 A LYS 91 ? CE ? A LYS 91 CE 24 1 Y 1 A LYS 91 ? NZ ? A LYS 91 NZ 25 1 Y 1 A GLU 124 ? CG ? A GLU 124 CG 26 1 Y 1 A GLU 124 ? CD ? A GLU 124 CD 27 1 Y 1 A GLU 124 ? OE1 ? A GLU 124 OE1 28 1 Y 1 A GLU 124 ? OE2 ? A GLU 124 OE2 29 1 Y 1 A GLN 128 ? CG ? A GLN 128 CG 30 1 Y 1 A GLN 128 ? CD ? A GLN 128 CD 31 1 Y 1 A GLN 128 ? OE1 ? A GLN 128 OE1 32 1 Y 1 A GLN 128 ? NE2 ? A GLN 128 NE2 33 1 Y 1 A ARG 132 ? CG ? A ARG 132 CG 34 1 Y 1 A ARG 132 ? CD ? A ARG 132 CD 35 1 Y 1 A ARG 132 ? NE ? A ARG 132 NE 36 1 Y 1 A ARG 132 ? CZ ? A ARG 132 CZ 37 1 Y 1 A ARG 132 ? NH1 ? A ARG 132 NH1 38 1 Y 1 A ARG 132 ? NH2 ? A ARG 132 NH2 39 1 Y 1 A LYS 136 ? CG ? A LYS 136 CG 40 1 Y 1 A LYS 136 ? CD ? A LYS 136 CD 41 1 Y 1 A LYS 136 ? CE ? A LYS 136 CE 42 1 Y 1 A LYS 136 ? NZ ? A LYS 136 NZ 43 1 Y 1 A LYS 148 ? CG ? A LYS 148 CG 44 1 Y 1 A LYS 148 ? CD ? A LYS 148 CD 45 1 Y 1 A LYS 148 ? CE ? A LYS 148 CE 46 1 Y 1 A LYS 148 ? NZ ? A LYS 148 NZ 47 1 Y 1 A GLU 155 ? CD ? A GLU 155 CD 48 1 Y 1 A GLU 155 ? OE1 ? A GLU 155 OE1 49 1 Y 1 A GLU 155 ? OE2 ? A GLU 155 OE2 50 1 Y 1 A GLN 163 ? CD ? A GLN 163 CD 51 1 Y 1 A GLN 163 ? OE1 ? A GLN 163 OE1 52 1 Y 1 A GLN 163 ? NE2 ? A GLN 163 NE2 53 1 Y 1 A GLN 166 ? OE1 ? A GLN 166 OE1 54 1 Y 1 A GLN 166 ? NE2 ? A GLN 166 NE2 55 1 Y 1 A GLU 171 ? CG ? A GLU 171 CG 56 1 Y 1 A GLU 171 ? CD ? A GLU 171 CD 57 1 Y 1 A GLU 171 ? OE1 ? A GLU 171 OE1 58 1 Y 1 A GLU 171 ? OE2 ? A GLU 171 OE2 59 1 Y 1 A ARG 199 ? CG ? A ARG 199 CG 60 1 Y 1 A ARG 199 ? CD ? A ARG 199 CD 61 1 Y 1 A ARG 199 ? NE ? A ARG 199 NE 62 1 Y 1 A ARG 199 ? CZ ? A ARG 199 CZ 63 1 Y 1 A ARG 199 ? NH1 ? A ARG 199 NH1 64 1 Y 1 A ARG 199 ? NH2 ? A ARG 199 NH2 65 1 Y 1 A GLN 204 ? CD ? A GLN 204 CD 66 1 Y 1 A GLN 204 ? OE1 ? A GLN 204 OE1 67 1 Y 1 A GLN 204 ? NE2 ? A GLN 204 NE2 68 1 Y 1 A GLN 205 ? CD ? A GLN 205 CD 69 1 Y 1 A GLN 205 ? OE1 ? A GLN 205 OE1 70 1 Y 1 A GLN 205 ? NE2 ? A GLN 205 NE2 71 1 Y 1 A GLU 206 ? CG ? A GLU 206 CG 72 1 Y 1 A GLU 206 ? CD ? A GLU 206 CD 73 1 Y 1 A GLU 206 ? OE1 ? A GLU 206 OE1 74 1 Y 1 A GLU 206 ? OE2 ? A GLU 206 OE2 75 1 Y 1 A GLU 207 ? CD ? A GLU 207 CD 76 1 Y 1 A GLU 207 ? OE1 ? A GLU 207 OE1 77 1 Y 1 A GLU 207 ? OE2 ? A GLU 207 OE2 78 1 Y 1 A LYS 218 ? CG ? A LYS 218 CG 79 1 Y 1 A LYS 218 ? CD ? A LYS 218 CD 80 1 Y 1 A LYS 218 ? CE ? A LYS 218 CE 81 1 Y 1 A LYS 218 ? NZ ? A LYS 218 NZ 82 1 Y 1 A GLU 231 ? CD ? A GLU 231 CD 83 1 Y 1 A GLU 231 ? OE1 ? A GLU 231 OE1 84 1 Y 1 A GLU 231 ? OE2 ? A GLU 231 OE2 85 1 Y 1 A LYS 236 ? CG ? A LYS 236 CG 86 1 Y 1 A LYS 236 ? CD ? A LYS 236 CD 87 1 Y 1 A LYS 236 ? CE ? A LYS 236 CE 88 1 Y 1 A LYS 236 ? NZ ? A LYS 236 NZ 89 1 Y 1 A ASP 237 ? CG ? A ASP 237 CG 90 1 Y 1 A ASP 237 ? OD1 ? A ASP 237 OD1 91 1 Y 1 A ASP 237 ? OD2 ? A ASP 237 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU 238 ? A LEU 238 2 1 Y 1 A GLU 239 ? A GLU 239 3 1 Y 1 A GLU 240 ? A GLU 240 4 1 Y 1 A ASN 241 ? A ASN 241 5 1 Y 1 A LEU 242 ? A LEU 242 6 1 Y 1 A TYR 243 ? A TYR 243 7 1 Y 1 A PHE 244 ? A PHE 244 8 1 Y 1 A GLN 245 ? A GLN 245 9 1 Y 1 A SER 246 ? A SER 246 10 1 Y 1 A HIS 247 ? A HIS 247 11 1 Y 1 A HIS 248 ? A HIS 248 12 1 Y 1 A HIS 249 ? A HIS 249 13 1 Y 1 A HIS 250 ? A HIS 250 14 1 Y 1 A HIS 251 ? A HIS 251 15 1 Y 1 A HIS 252 ? A HIS 252 16 1 Y 1 A HIS 253 ? A HIS 253 17 1 Y 1 A HIS 254 ? A HIS 254 18 1 Y 1 A HIS 255 ? A HIS 255 19 1 Y 1 A HIS 256 ? A HIS 256 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM115355 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM51310 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MANGANESE (II) ION' MN 3 ;(R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE ; LP5 4 'ACETATE ION' ACT 5 GLYCEROL GOL 6 water HOH #