HEADER PROTEIN TRANSPORT 31-MAY-16 5K94 TITLE DELETION-INSERTION CHIMERA OF MBP WITH THE PREPROTEIN CROSS-LINKING TITLE 2 DOMAIN OF THE SECA ATPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE-BINDING PERIPLASMIC PROTEIN,PROTEIN TRANSLOCASE COMPND 3 SUBUNIT SECA,MALTOSE-BINDING PERIPLASMIC PROTEIN; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: MBP,MMBP,MALTODEXTRIN-BINDING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7; SOURCE 3 ORGANISM_TAXID: 83334; SOURCE 4 GENE: MALE, Z5632, ECS5017, SECA, Z0108, ECS0102; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PREPROTEIN TRANSLOCASE, SECA, PREPROTEIN CROSS-LINKING DOMAIN, PPXD, KEYWDS 2 MBP CHIMERA, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR B.H.SHILTON,J.HACKETT,N.GHONAIM REVDAT 5 27-SEP-23 5K94 1 REMARK REVDAT 4 08-JAN-20 5K94 1 REMARK REVDAT 3 19-SEP-18 5K94 1 JRNL REVDAT 2 20-SEP-17 5K94 1 REMARK REVDAT 1 07-JUN-17 5K94 0 JRNL AUTH A.KHALILI YAZDI,S.NAMJOSHI,J.HACKETT,N.GHONAIM,B.H.SHILTON JRNL TITL CHARACTERIZATION OF A POLYPEPTIDE-BINDING SITE IN THE DEAD JRNL TITL 2 MOTOR OF THE SECA ATPASE. JRNL REF FEBS LETT. V. 591 3378 2017 JRNL REFN ISSN 1873-3468 JRNL PMID 28862749 JRNL DOI 10.1002/1873-3468.12832 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 58556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 2991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 17.9653 - 5.7333 1.00 2964 155 0.1759 0.1738 REMARK 3 2 5.7333 - 4.5755 1.00 2836 157 0.1750 0.1728 REMARK 3 3 4.5755 - 4.0044 1.00 2775 157 0.1631 0.1976 REMARK 3 4 4.0044 - 3.6416 1.00 2780 146 0.1755 0.1998 REMARK 3 5 3.6416 - 3.3825 1.00 2763 149 0.1930 0.2191 REMARK 3 6 3.3825 - 3.1842 1.00 2795 129 0.2125 0.2360 REMARK 3 7 3.1842 - 3.0255 1.00 2743 164 0.2246 0.2688 REMARK 3 8 3.0255 - 2.8944 1.00 2719 134 0.2204 0.2604 REMARK 3 9 2.8944 - 2.7834 1.00 2755 148 0.2229 0.2808 REMARK 3 10 2.7834 - 2.6876 1.00 2742 149 0.2164 0.2361 REMARK 3 11 2.6876 - 2.6039 1.00 2692 145 0.2257 0.2729 REMARK 3 12 2.6039 - 2.5296 1.00 2751 153 0.2250 0.2476 REMARK 3 13 2.5296 - 2.4632 1.00 2704 125 0.2276 0.2774 REMARK 3 14 2.4632 - 2.4033 1.00 2744 141 0.2349 0.2734 REMARK 3 15 2.4033 - 2.3488 1.00 2698 148 0.2378 0.3272 REMARK 3 16 2.3488 - 2.2989 0.99 2664 158 0.2449 0.2879 REMARK 3 17 2.2989 - 2.2530 0.95 2613 140 0.2497 0.3121 REMARK 3 18 2.2530 - 2.2105 0.89 2376 156 0.2511 0.2865 REMARK 3 19 2.2105 - 2.1711 0.83 2223 111 0.2619 0.2903 REMARK 3 20 2.1711 - 2.1344 0.80 2201 110 0.2683 0.3148 REMARK 3 21 2.1344 - 2.1000 0.76 2027 116 0.2812 0.3841 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 8144 REMARK 3 ANGLE : 0.521 11030 REMARK 3 CHIRALITY : 0.040 1200 REMARK 3 PLANARITY : 0.003 1432 REMARK 3 DIHEDRAL : 12.741 4902 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.2896 13.4809 28.6337 REMARK 3 T TENSOR REMARK 3 T11: 0.2789 T22: 0.2592 REMARK 3 T33: 0.1940 T12: 0.0550 REMARK 3 T13: 0.0549 T23: -0.0871 REMARK 3 L TENSOR REMARK 3 L11: 1.7348 L22: 5.8062 REMARK 3 L33: 4.2140 L12: -1.7305 REMARK 3 L13: 0.5098 L23: -2.6703 REMARK 3 S TENSOR REMARK 3 S11: -0.0296 S12: -0.0630 S13: 0.1133 REMARK 3 S21: 0.3629 S22: 0.1192 S23: 0.1883 REMARK 3 S31: -0.5941 S32: -0.4330 S33: -0.0668 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 361 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3456 15.6301 11.3669 REMARK 3 T TENSOR REMARK 3 T11: 0.2958 T22: 0.2985 REMARK 3 T33: 0.5189 T12: -0.0196 REMARK 3 T13: 0.0402 T23: 0.1464 REMARK 3 L TENSOR REMARK 3 L11: 7.2363 L22: 5.9456 REMARK 3 L33: 4.4238 L12: -0.9639 REMARK 3 L13: -1.3796 L23: 1.1902 REMARK 3 S TENSOR REMARK 3 S11: -0.4685 S12: -0.2450 S13: -0.5892 REMARK 3 S21: 0.2605 S22: 0.5382 S23: 0.6673 REMARK 3 S31: 0.6697 S32: -0.2456 S33: -0.0926 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 362 THROUGH 1370 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.8123 6.1700 31.9191 REMARK 3 T TENSOR REMARK 3 T11: 0.2699 T22: 0.2365 REMARK 3 T33: 0.2271 T12: 0.0631 REMARK 3 T13: 0.0450 T23: -0.0641 REMARK 3 L TENSOR REMARK 3 L11: 1.2229 L22: 4.7074 REMARK 3 L33: 3.1635 L12: -0.8892 REMARK 3 L13: 0.6297 L23: -2.1723 REMARK 3 S TENSOR REMARK 3 S11: 0.0450 S12: 0.0088 S13: -0.0649 REMARK 3 S21: 0.3582 S22: -0.0877 S23: -0.0711 REMARK 3 S31: -0.4078 S32: -0.1259 S33: 0.0344 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4258 55.2125 -6.1598 REMARK 3 T TENSOR REMARK 3 T11: 0.3070 T22: 0.2561 REMARK 3 T33: 0.2497 T12: 0.0572 REMARK 3 T13: -0.0791 T23: -0.0812 REMARK 3 L TENSOR REMARK 3 L11: 3.7161 L22: 1.7875 REMARK 3 L33: 3.9078 L12: 1.7400 REMARK 3 L13: -2.0854 L23: -1.1173 REMARK 3 S TENSOR REMARK 3 S11: 0.1522 S12: -0.2502 S13: 0.0897 REMARK 3 S21: 0.0314 S22: -0.0898 S23: 0.0690 REMARK 3 S31: -0.5491 S32: -0.0206 S33: -0.0382 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 164 THROUGH 1200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8462 37.0191 9.2186 REMARK 3 T TENSOR REMARK 3 T11: 0.1982 T22: 0.3912 REMARK 3 T33: 0.4042 T12: -0.0397 REMARK 3 T13: -0.0530 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 0.1513 L22: 5.0806 REMARK 3 L33: 1.6464 L12: 0.2387 REMARK 3 L13: 0.2045 L23: -2.2005 REMARK 3 S TENSOR REMARK 3 S11: -0.0082 S12: 0.0818 S13: 0.1275 REMARK 3 S21: 0.2224 S22: -0.0034 S23: -0.1215 REMARK 3 S31: -0.2513 S32: 0.3257 S33: 0.0249 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1201 THROUGH 1370 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1585 58.9004 -10.1562 REMARK 3 T TENSOR REMARK 3 T11: 0.3669 T22: 0.2539 REMARK 3 T33: 0.2096 T12: -0.0831 REMARK 3 T13: -0.0269 T23: -0.0549 REMARK 3 L TENSOR REMARK 3 L11: 3.8005 L22: 1.5049 REMARK 3 L33: 2.9708 L12: 1.0589 REMARK 3 L13: -1.8564 L23: -0.8090 REMARK 3 S TENSOR REMARK 3 S11: 0.1909 S12: -0.1024 S13: 0.1441 REMARK 3 S21: -0.0252 S22: -0.0718 S23: -0.0679 REMARK 3 S31: -0.6399 S32: 0.1317 S33: -0.0980 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K94 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000221897. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110536 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 45.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.38100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1OMP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM PCB BUFFER (QIAGEN; SODIUM REMARK 280 PROPIONATE, SODIUM CACODYLATE, BIS-TRIS PROPANE), PH 7.0; 19.5 % REMARK 280 PEG 1500; 10% GLYCEROL; 28 MG/ML PROTEIN CONCENTRATION, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 70.44000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 82.63000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 70.44000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 82.63000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 55 -165.88 -113.93 REMARK 500 LEU A 122 83.00 -150.34 REMARK 500 ALA A 168 -72.84 -77.84 REMARK 500 VAL A 324 -64.45 -132.07 REMARK 500 ASP A1209 -160.02 -116.06 REMARK 500 ASP B 55 -163.20 -100.19 REMARK 500 ALA B 168 -73.86 -80.20 REMARK 500 VAL B 324 -70.60 -123.63 REMARK 500 THR B 340 -1.20 63.85 REMARK 500 ASP B1209 -159.60 -106.03 REMARK 500 TYR B1283 -51.02 -121.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue B3P A 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue B3P B 1401 DBREF 5K94 A 1 171 UNP P0AEY0 MALE_ECO57 27 197 DBREF 5K94 A 229 368 UNP Q8X996 SECA_ECO57 229 368 DBREF 5K94 A 1176 1370 UNP P0AEY0 MALE_ECO57 202 396 DBREF 5K94 B 1 171 UNP P0AEY0 MALE_ECO57 27 197 DBREF 5K94 B 229 368 UNP Q8X996 SECA_ECO57 229 368 DBREF 5K94 B 1176 1370 UNP P0AEY0 MALE_ECO57 202 396 SEQADV 5K94 GLY A -1 UNP P0AEY0 EXPRESSION TAG SEQADV 5K94 ALA A 0 UNP P0AEY0 EXPRESSION TAG SEQADV 5K94 GLY B -1 UNP P0AEY0 EXPRESSION TAG SEQADV 5K94 ALA B 0 UNP P0AEY0 EXPRESSION TAG SEQRES 1 A 508 GLY ALA LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE SEQRES 2 A 508 ASN GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY SEQRES 3 A 508 LYS LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL SEQRES 4 A 508 GLU HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL SEQRES 5 A 508 ALA ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA SEQRES 6 A 508 HIS ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU SEQRES 7 A 508 ALA GLU ILE THR PRO ASP LYS ALA PHE GLN ASP LYS LEU SEQRES 8 A 508 TYR PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS SEQRES 9 A 508 LEU ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU SEQRES 10 A 508 ILE TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR SEQRES 11 A 508 TRP GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA SEQRES 12 A 508 LYS GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO SEQRES 13 A 508 TYR PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR SEQRES 14 A 508 ALA PHE LYS TYR ALA GLU ASP SER SER GLU MET TYR LYS SEQRES 15 A 508 ARG VAL ASN LYS ILE ILE PRO HIS LEU ILE ARG GLN GLU SEQRES 16 A 508 LYS GLU ASP SER GLU THR PHE GLN GLY GLU GLY HIS PHE SEQRES 17 A 508 SER VAL ASP GLU LYS SER ARG GLN VAL ASN LEU THR GLU SEQRES 18 A 508 ARG GLY LEU VAL LEU ILE GLU GLU LEU LEU VAL LYS GLU SEQRES 19 A 508 GLY ILE MET ASP GLU GLY GLU SER LEU TYR SER PRO ALA SEQRES 20 A 508 ASN ILE MET LEU MET HIS HIS VAL THR ALA ALA LEU ARG SEQRES 21 A 508 ALA HIS ALA LEU PHE THR ARG ASP VAL ASP TYR ILE VAL SEQRES 22 A 508 LYS ASP GLY GLU VAL ILE ILE VAL ASP GLU HIS THR GLY SEQRES 23 A 508 ARG THR MET GLN GLY ARG ARG TRP SER ASP GLY LEU HIS SEQRES 24 A 508 GLN ALA VAL GLU ALA LYS GLU GLY VAL GLN ILE GLN ASN SEQRES 25 A 508 GLU TYR ASP ILE LYS ASP VAL GLY VAL ASP ASN ALA GLY SEQRES 26 A 508 ALA LYS ALA GLY LEU THR PHE LEU VAL ASP LEU ILE LYS SEQRES 27 A 508 ASN LYS HIS MET ASN ALA ASP THR ASP TYR SER ILE ALA SEQRES 28 A 508 GLU ALA ALA PHE ASN LYS GLY GLU THR ALA MET THR ILE SEQRES 29 A 508 ASN GLY PRO TRP ALA TRP SER ASN ILE ASP THR SER LYS SEQRES 30 A 508 VAL ASN TYR GLY VAL THR VAL LEU PRO THR PHE LYS GLY SEQRES 31 A 508 GLN PRO SER LYS PRO PHE VAL GLY VAL LEU SER ALA GLY SEQRES 32 A 508 ILE ASN ALA ALA SER PRO ASN LYS GLU LEU ALA LYS GLU SEQRES 33 A 508 PHE LEU GLU ASN TYR LEU LEU THR ASP GLU GLY LEU GLU SEQRES 34 A 508 ALA VAL ASN LYS ASP LYS PRO LEU GLY ALA VAL ALA LEU SEQRES 35 A 508 LYS SER TYR GLU GLU GLU LEU ALA LYS ASP PRO ARG ILE SEQRES 36 A 508 ALA ALA THR MET GLU ASN ALA GLN LYS GLY GLU ILE MET SEQRES 37 A 508 PRO ASN ILE PRO GLN MET SER ALA PHE TRP TYR ALA VAL SEQRES 38 A 508 ARG THR ALA VAL ILE ASN ALA ALA SER GLY ARG GLN THR SEQRES 39 A 508 VAL ASP GLU ALA LEU LYS ASP ALA GLN THR ARG ILE THR SEQRES 40 A 508 LYS SEQRES 1 B 508 GLY ALA LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE SEQRES 2 B 508 ASN GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY SEQRES 3 B 508 LYS LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL SEQRES 4 B 508 GLU HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL SEQRES 5 B 508 ALA ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA SEQRES 6 B 508 HIS ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU SEQRES 7 B 508 ALA GLU ILE THR PRO ASP LYS ALA PHE GLN ASP LYS LEU SEQRES 8 B 508 TYR PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS SEQRES 9 B 508 LEU ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU SEQRES 10 B 508 ILE TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR SEQRES 11 B 508 TRP GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA SEQRES 12 B 508 LYS GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO SEQRES 13 B 508 TYR PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR SEQRES 14 B 508 ALA PHE LYS TYR ALA GLU ASP SER SER GLU MET TYR LYS SEQRES 15 B 508 ARG VAL ASN LYS ILE ILE PRO HIS LEU ILE ARG GLN GLU SEQRES 16 B 508 LYS GLU ASP SER GLU THR PHE GLN GLY GLU GLY HIS PHE SEQRES 17 B 508 SER VAL ASP GLU LYS SER ARG GLN VAL ASN LEU THR GLU SEQRES 18 B 508 ARG GLY LEU VAL LEU ILE GLU GLU LEU LEU VAL LYS GLU SEQRES 19 B 508 GLY ILE MET ASP GLU GLY GLU SER LEU TYR SER PRO ALA SEQRES 20 B 508 ASN ILE MET LEU MET HIS HIS VAL THR ALA ALA LEU ARG SEQRES 21 B 508 ALA HIS ALA LEU PHE THR ARG ASP VAL ASP TYR ILE VAL SEQRES 22 B 508 LYS ASP GLY GLU VAL ILE ILE VAL ASP GLU HIS THR GLY SEQRES 23 B 508 ARG THR MET GLN GLY ARG ARG TRP SER ASP GLY LEU HIS SEQRES 24 B 508 GLN ALA VAL GLU ALA LYS GLU GLY VAL GLN ILE GLN ASN SEQRES 25 B 508 GLU TYR ASP ILE LYS ASP VAL GLY VAL ASP ASN ALA GLY SEQRES 26 B 508 ALA LYS ALA GLY LEU THR PHE LEU VAL ASP LEU ILE LYS SEQRES 27 B 508 ASN LYS HIS MET ASN ALA ASP THR ASP TYR SER ILE ALA SEQRES 28 B 508 GLU ALA ALA PHE ASN LYS GLY GLU THR ALA MET THR ILE SEQRES 29 B 508 ASN GLY PRO TRP ALA TRP SER ASN ILE ASP THR SER LYS SEQRES 30 B 508 VAL ASN TYR GLY VAL THR VAL LEU PRO THR PHE LYS GLY SEQRES 31 B 508 GLN PRO SER LYS PRO PHE VAL GLY VAL LEU SER ALA GLY SEQRES 32 B 508 ILE ASN ALA ALA SER PRO ASN LYS GLU LEU ALA LYS GLU SEQRES 33 B 508 PHE LEU GLU ASN TYR LEU LEU THR ASP GLU GLY LEU GLU SEQRES 34 B 508 ALA VAL ASN LYS ASP LYS PRO LEU GLY ALA VAL ALA LEU SEQRES 35 B 508 LYS SER TYR GLU GLU GLU LEU ALA LYS ASP PRO ARG ILE SEQRES 36 B 508 ALA ALA THR MET GLU ASN ALA GLN LYS GLY GLU ILE MET SEQRES 37 B 508 PRO ASN ILE PRO GLN MET SER ALA PHE TRP TYR ALA VAL SEQRES 38 B 508 ARG THR ALA VAL ILE ASN ALA ALA SER GLY ARG GLN THR SEQRES 39 B 508 VAL ASP GLU ALA LEU LYS ASP ALA GLN THR ARG ILE THR SEQRES 40 B 508 LYS HET B3P A1401 19 HET B3P B1401 19 HETNAM B3P 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)- HETNAM 2 B3P PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL FORMUL 3 B3P 2(C11 H26 N2 O6) FORMUL 5 HOH *454(H2 O) HELIX 1 AA1 GLY A 16 GLY A 32 1 17 HELIX 2 AA2 LYS A 42 ALA A 51 1 10 HELIX 3 AA3 ALA A 52 GLY A 54 5 3 HELIX 4 AA4 HIS A 64 SER A 73 1 10 HELIX 5 AA5 ASP A 82 ASP A 87 1 6 HELIX 6 AA6 TYR A 90 ALA A 96 1 7 HELIX 7 AA7 GLU A 131 ALA A 141 1 11 HELIX 8 AA8 GLU A 153 ASP A 164 1 12 HELIX 9 AA9 ASP A 231 LYS A 241 1 11 HELIX 10 AB1 ILE A 242 LEU A 246 5 5 HELIX 11 AB2 THR A 275 GLU A 289 1 15 HELIX 12 AB3 SER A 300 ALA A 302 5 3 HELIX 13 AB4 ASN A 303 LEU A 319 1 17 HELIX 14 AB5 GLY A 352 GLY A 362 1 11 HELIX 15 AB6 ASN A 1185 ASN A 1201 1 17 HELIX 16 AB7 ASP A 1209 LYS A 1219 1 11 HELIX 17 AB8 GLY A 1228 TRP A 1230 5 3 HELIX 18 AB9 ALA A 1231 LYS A 1239 1 9 HELIX 19 AC1 ASN A 1272 TYR A 1283 1 12 HELIX 20 AC2 THR A 1286 LYS A 1297 1 12 HELIX 21 AC3 LEU A 1304 ALA A 1312 1 9 HELIX 22 AC4 ASP A 1314 GLY A 1327 1 14 HELIX 23 AC5 GLN A 1335 SER A 1352 1 18 HELIX 24 AC6 THR A 1356 LYS A 1370 1 15 HELIX 25 AC7 GLY B 16 GLY B 32 1 17 HELIX 26 AC8 LYS B 42 ALA B 52 1 11 HELIX 27 AC9 HIS B 64 SER B 73 1 10 HELIX 28 AD1 ASP B 82 ASP B 87 1 6 HELIX 29 AD2 TYR B 90 VAL B 97 1 8 HELIX 30 AD3 THR B 128 GLU B 130 5 3 HELIX 31 AD4 GLU B 131 ALA B 141 1 11 HELIX 32 AD5 GLU B 153 ASP B 164 1 12 HELIX 33 AD6 GLU B 234 LYS B 241 1 8 HELIX 34 AD7 ILE B 242 LEU B 246 5 5 HELIX 35 AD8 THR B 275 GLU B 289 1 15 HELIX 36 AD9 SER B 300 ALA B 302 5 3 HELIX 37 AE1 ASN B 303 LEU B 319 1 17 HELIX 38 AE2 GLY B 352 GLY B 362 1 11 HELIX 39 AE3 ASN B 1185 ASN B 1201 1 17 HELIX 40 AE4 ASP B 1209 LYS B 1219 1 11 HELIX 41 AE5 GLY B 1228 TRP B 1230 5 3 HELIX 42 AE6 ALA B 1231 LYS B 1239 1 9 HELIX 43 AE7 ASN B 1272 TYR B 1283 1 12 HELIX 44 AE8 THR B 1286 LYS B 1297 1 12 HELIX 45 AE9 LEU B 1304 ALA B 1312 1 9 HELIX 46 AF1 ASP B 1314 GLY B 1327 1 14 HELIX 47 AF2 GLN B 1335 SER B 1352 1 18 HELIX 48 AF3 THR B 1356 THR B 1369 1 14 SHEET 1 AA1 6 VAL A 35 GLU A 38 0 SHEET 2 AA1 6 LEU A 7 TRP A 10 1 N ILE A 9 O GLU A 38 SHEET 3 AA1 6 ILE A 59 ALA A 63 1 O PHE A 61 N TRP A 10 SHEET 4 AA1 6 PHE A1258 ILE A1266 -1 O GLY A1265 N ILE A 60 SHEET 5 AA1 6 TYR A 106 GLU A 111 -1 N ILE A 108 O LEU A1262 SHEET 6 AA1 6 ALA A1301 VAL A1302 -1 O ALA A1301 N VAL A 110 SHEET 1 AA2 5 VAL A 35 GLU A 38 0 SHEET 2 AA2 5 LEU A 7 TRP A 10 1 N ILE A 9 O GLU A 38 SHEET 3 AA2 5 ILE A 59 ALA A 63 1 O PHE A 61 N TRP A 10 SHEET 4 AA2 5 PHE A1258 ILE A1266 -1 O GLY A1265 N ILE A 60 SHEET 5 AA2 5 GLU A1328 ILE A1329 1 O GLU A1328 N VAL A1259 SHEET 1 AA3 2 ARG A 98 TYR A 99 0 SHEET 2 AA3 2 LYS A 102 LEU A 103 -1 O LYS A 102 N TYR A 99 SHEET 1 AA4 4 SER A 145 LEU A 147 0 SHEET 2 AA4 4 THR A1222 ASN A1227 1 O ALA A1223 N SER A 145 SHEET 3 AA4 4 SER A 114 ASN A 118 -1 N ILE A 116 O THR A1225 SHEET 4 AA4 4 TYR A1242 THR A1245 -1 O THR A1245 N LEU A 115 SHEET 1 AA5 3 ARG A 248 GLN A 249 0 SHEET 2 AA5 3 PHE A 263 ASP A 266 1 O PHE A 263 N GLN A 249 SHEET 3 AA5 3 GLN A 271 LEU A 274 -1 O ASN A 273 N SER A 264 SHEET 1 AA6 2 TYR A 326 LYS A 329 0 SHEET 2 AA6 2 GLU A 332 ILE A 335 -1 O ILE A 334 N ILE A 327 SHEET 1 AA7 2 THR A1249 PHE A1250 0 SHEET 2 AA7 2 GLN A1253 PRO A1254 -1 O GLN A1253 N PHE A1250 SHEET 1 AA8 6 VAL B 35 GLU B 38 0 SHEET 2 AA8 6 LEU B 7 TRP B 10 1 N ILE B 9 O THR B 36 SHEET 3 AA8 6 ILE B 59 ALA B 63 1 O ILE B 59 N TRP B 10 SHEET 4 AA8 6 PHE B1258 ILE B1266 -1 O SER B1263 N TRP B 62 SHEET 5 AA8 6 TYR B 106 GLU B 111 -1 N ILE B 108 O LEU B1262 SHEET 6 AA8 6 ALA B1301 VAL B1302 -1 O ALA B1301 N VAL B 110 SHEET 1 AA9 5 VAL B 35 GLU B 38 0 SHEET 2 AA9 5 LEU B 7 TRP B 10 1 N ILE B 9 O THR B 36 SHEET 3 AA9 5 ILE B 59 ALA B 63 1 O ILE B 59 N TRP B 10 SHEET 4 AA9 5 PHE B1258 ILE B1266 -1 O SER B1263 N TRP B 62 SHEET 5 AA9 5 GLU B1328 ILE B1329 1 O GLU B1328 N VAL B1259 SHEET 1 AB1 2 ARG B 98 TYR B 99 0 SHEET 2 AB1 2 LYS B 102 LEU B 103 -1 O LYS B 102 N TYR B 99 SHEET 1 AB2 4 SER B 145 LEU B 147 0 SHEET 2 AB2 4 THR B1222 ASN B1227 1 O ALA B1223 N SER B 145 SHEET 3 AB2 4 SER B 114 ASN B 118 -1 N ASN B 118 O ALA B1223 SHEET 4 AB2 4 TYR B1242 THR B1245 -1 O GLY B1243 N TYR B 117 SHEET 1 AB3 2 TYR B 167 ALA B 229 0 SHEET 2 AB3 2 GLU B 368 GLY B1182 -1 O ASP B1177 N LYS B 170 SHEET 1 AB4 2 PHE B 263 ASP B 266 0 SHEET 2 AB4 2 GLN B 271 LEU B 274 -1 O ASN B 273 N SER B 264 SHEET 1 AB5 2 TYR B 326 LYS B 329 0 SHEET 2 AB5 2 GLU B 332 ILE B 335 -1 O ILE B 334 N ILE B 327 SITE 1 AC1 4 GLU A 153 TYR A1210 TRP A1230 HOH A1502 SITE 1 AC2 4 TYR B 155 TYR B1210 TRP B1230 HOH B1528 CRYST1 140.880 165.260 43.820 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007098 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006051 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022821 0.00000