HEADER ELECTRON TRANSPORT 31-MAY-16 5K9B TITLE AZOTOBACTER VINELANDII FLAVODOXIN II COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVODOXIN-2; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AZOTOBACTER VINELANDII; SOURCE 3 ORGANISM_TAXID: 354 KEYWDS FLAVODOXIN, OXIDIZED, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR D.C.REES,H.M.SEGAL,T.SPATZAL REVDAT 5 28-FEB-24 5K9B 1 LINK REVDAT 4 25-DEC-19 5K9B 1 REMARK REVDAT 3 04-OCT-17 5K9B 1 JRNL REVDAT 2 20-SEP-17 5K9B 1 REMARK REVDAT 1 02-AUG-17 5K9B 0 JRNL AUTH H.M.SEGAL,T.SPATZAL,M.G.HILL,A.K.UDIT,D.C.REES JRNL TITL ELECTROCHEMICAL AND STRUCTURAL CHARACTERIZATION OF JRNL TITL 2 AZOTOBACTER VINELANDII FLAVODOXIN II. JRNL REF PROTEIN SCI. V. 26 1984 2017 JRNL REFN ESSN 1469-896X JRNL PMID 28710816 JRNL DOI 10.1002/PRO.3236 REMARK 2 REMARK 2 RESOLUTION. 1.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 56020 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.5456 - 3.1863 1.00 2954 163 0.1511 0.1679 REMARK 3 2 3.1863 - 2.5293 1.00 2790 135 0.1528 0.1824 REMARK 3 3 2.5293 - 2.2096 1.00 2723 152 0.1453 0.1624 REMARK 3 4 2.2096 - 2.0076 1.00 2734 138 0.1392 0.1551 REMARK 3 5 2.0076 - 1.8637 1.00 2729 118 0.1445 0.1647 REMARK 3 6 1.8637 - 1.7539 1.00 2706 125 0.1434 0.1726 REMARK 3 7 1.7539 - 1.6660 1.00 2671 129 0.1426 0.1615 REMARK 3 8 1.6660 - 1.5935 1.00 2682 128 0.1354 0.1340 REMARK 3 9 1.5935 - 1.5322 1.00 2631 157 0.1373 0.1623 REMARK 3 10 1.5322 - 1.4793 1.00 2685 146 0.1405 0.1645 REMARK 3 11 1.4793 - 1.4330 1.00 2677 126 0.1448 0.1562 REMARK 3 12 1.4330 - 1.3921 1.00 2645 158 0.1553 0.1868 REMARK 3 13 1.3921 - 1.3554 1.00 2626 147 0.1547 0.1636 REMARK 3 14 1.3554 - 1.3223 1.00 2638 135 0.1563 0.1844 REMARK 3 15 1.3223 - 1.2923 1.00 2641 149 0.1559 0.1470 REMARK 3 16 1.2923 - 1.2648 1.00 2688 134 0.1635 0.1771 REMARK 3 17 1.2648 - 1.2395 1.00 2541 155 0.1642 0.1696 REMARK 3 18 1.2395 - 1.2161 0.99 2624 157 0.1730 0.1768 REMARK 3 19 1.2161 - 1.1944 0.99 2606 132 0.1829 0.1931 REMARK 3 20 1.1944 - 1.1741 0.86 2233 112 0.2058 0.2272 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.080 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1545 REMARK 3 ANGLE : 1.128 2116 REMARK 3 CHIRALITY : 0.087 227 REMARK 3 PLANARITY : 0.008 276 REMARK 3 DIHEDRAL : 28.479 582 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 1 THROUGH 179) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6580 -8.7895 15.7275 REMARK 3 T TENSOR REMARK 3 T11: 0.0803 T22: 0.0820 REMARK 3 T33: 0.0692 T12: -0.0282 REMARK 3 T13: 0.0019 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.2704 L22: 1.6750 REMARK 3 L33: 1.6149 L12: 0.7350 REMARK 3 L13: 0.4689 L23: 0.4059 REMARK 3 S TENSOR REMARK 3 S11: 0.0223 S12: -0.1021 S13: -0.0328 REMARK 3 S21: 0.0167 S22: -0.0595 S23: 0.0052 REMARK 3 S31: 0.0615 S32: 0.0041 S33: 0.0052 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K9B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000221918. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99984 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOXDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56103 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.170 REMARK 200 RESOLUTION RANGE LOW (A) : 35.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 18.40 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.7 REMARK 200 DATA REDUNDANCY IN SHELL : 10.80 REMARK 200 R MERGE FOR SHELL (I) : 0.77600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23-28% PEG 3350 (V/V), 0.15-0.3 M REMARK 280 MAGNESIUM CHLORIDE HEXAHYDRATE, 100 MM TRIS-HCL (PH 8.5), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.55200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 119.10400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 119.10400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 59.55200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 31 O HOH A 303 1.28 REMARK 500 HH11 ARG A 15 O HOH A 301 1.45 REMARK 500 HH12 ARG A 15 O HOH A 301 1.59 REMARK 500 O HOH A 392 O HOH A 444 1.73 REMARK 500 NH1 ARG A 15 O HOH A 301 1.75 REMARK 500 O HOH A 304 O HOH A 373 1.79 REMARK 500 OE1 GLN A 48 O HOH A 302 1.80 REMARK 500 OG SER A 31 O HOH A 303 1.85 REMARK 500 OG SER A 115 O HOH A 304 2.02 REMARK 500 O HOH A 383 O HOH A 430 2.08 REMARK 500 O HOH A 304 O HOH A 308 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HZ3 LYS A 16 O LEU A 179 4545 1.52 REMARK 500 O HOH A 304 O HOH A 304 6555 1.57 REMARK 500 O HOH A 327 O HOH A 328 1455 1.98 REMARK 500 OD1 ASP A 131 O HOH A 407 1455 2.02 REMARK 500 OE2 GLU A 82 O HOH A 413 6555 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 73 -142.16 -155.76 REMARK 500 ASN A 105 25.15 -141.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 58 GLU A 59 148.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 475 DISTANCE = 7.24 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 26 OD2 REMARK 620 2 HOH A 340 O 95.2 REMARK 620 3 HOH A 381 O 87.1 174.4 REMARK 620 4 HOH A 414 O 90.4 95.1 90.0 REMARK 620 5 HOH A 427 O 94.4 87.6 87.1 174.3 REMARK 620 6 HOH A 463 O 164.1 100.1 77.3 92.6 82.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 131 OD1 REMARK 620 2 HOH A 398 O 57.7 REMARK 620 3 HOH A 407 O 56.2 2.0 REMARK 620 4 HOH A 459 O 60.4 3.8 5.8 REMARK 620 5 HOH A 473 O 60.2 2.7 4.0 3.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 302 O REMARK 620 2 HOH A 331 O 77.4 REMARK 620 3 HOH A 360 O 82.9 93.4 REMARK 620 4 HOH A 444 O 62.1 81.5 145.0 REMARK 620 5 HOH A 464 O 100.1 176.3 83.5 99.8 REMARK 620 6 HOH A 474 O 168.8 93.0 103.6 111.1 89.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 204 DBREF 5K9B A 0 179 UNP P00324 FLAV_AZOVI 1 180 SEQRES 1 A 180 MET ALA LYS ILE GLY LEU PHE PHE GLY SER ASN THR GLY SEQRES 2 A 180 LYS THR ARG LYS VAL ALA LYS SER ILE LYS LYS ARG PHE SEQRES 3 A 180 ASP ASP GLU THR MET SER ASP ALA LEU ASN VAL ASN ARG SEQRES 4 A 180 VAL SER ALA GLU ASP PHE ALA GLN TYR GLN PHE LEU ILE SEQRES 5 A 180 LEU GLY THR PRO THR LEU GLY GLU GLY GLU LEU PRO GLY SEQRES 6 A 180 LEU SER SER ASP CYS GLU ASN GLU SER TRP GLU GLU PHE SEQRES 7 A 180 LEU PRO LYS ILE GLU GLY LEU ASP PHE SER GLY LYS THR SEQRES 8 A 180 VAL ALA LEU PHE GLY LEU GLY ASP GLN VAL GLY TYR PRO SEQRES 9 A 180 GLU ASN TYR LEU ASP ALA LEU GLY GLU LEU TYR SER PHE SEQRES 10 A 180 PHE LYS ASP ARG GLY ALA LYS ILE VAL GLY SER TRP SER SEQRES 11 A 180 THR ASP GLY TYR GLU PHE GLU SER SER GLU ALA VAL VAL SEQRES 12 A 180 ASP GLY LYS PHE VAL GLY LEU ALA LEU ASP LEU ASP ASN SEQRES 13 A 180 GLN SER GLY LYS THR ASP GLU ARG VAL ALA ALA TRP LEU SEQRES 14 A 180 ALA GLN ILE ALA PRO GLU PHE GLY LEU SER LEU HET FMN A 201 50 HET MG A 202 1 HET MG A 203 1 HET MG A 204 1 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM MG MAGNESIUM ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 MG 3(MG 2+) FORMUL 6 HOH *175(H2 O) HELIX 1 AA1 GLY A 12 LYS A 23 1 12 HELIX 2 AA2 ASN A 37 VAL A 39 5 3 HELIX 3 AA3 SER A 40 GLN A 46 1 7 HELIX 4 AA4 GLY A 64 ASP A 68 5 5 HELIX 5 AA5 SER A 73 GLU A 82 1 10 HELIX 6 AA6 LEU A 107 ARG A 120 1 14 HELIX 7 AA7 GLN A 156 GLY A 158 5 3 HELIX 8 AA8 LYS A 159 GLY A 176 1 18 SHEET 1 AA1 5 LEU A 34 ASN A 35 0 SHEET 2 AA1 5 ILE A 3 PHE A 7 1 N LEU A 5 O LEU A 34 SHEET 3 AA1 5 PHE A 49 PRO A 55 1 O PHE A 49 N GLY A 4 SHEET 4 AA1 5 THR A 90 LEU A 96 1 O PHE A 94 N LEU A 52 SHEET 5 AA1 5 LYS A 123 ILE A 124 1 O LYS A 123 N VAL A 91 SHEET 1 AA2 5 LEU A 34 ASN A 35 0 SHEET 2 AA2 5 ILE A 3 PHE A 7 1 N LEU A 5 O LEU A 34 SHEET 3 AA2 5 PHE A 49 PRO A 55 1 O PHE A 49 N GLY A 4 SHEET 4 AA2 5 THR A 90 LEU A 96 1 O PHE A 94 N LEU A 52 SHEET 5 AA2 5 LEU A 149 LEU A 151 1 O LEU A 149 N GLY A 95 SHEET 1 AA3 3 TRP A 128 SER A 129 0 SHEET 2 AA3 3 LYS A 145 PHE A 146 -1 O PHE A 146 N TRP A 128 SHEET 3 AA3 3 VAL A 141 VAL A 142 -1 N VAL A 142 O LYS A 145 LINK OD2 ASP A 26 MG MG A 203 1555 1555 2.21 LINK OD1 ASP A 131 MG MG A 202 1555 1455 2.79 LINK MG MG A 202 O HOH A 398 1555 1555 2.10 LINK MG MG A 202 O HOH A 407 1555 1555 2.16 LINK MG MG A 202 O HOH A 459 1555 1555 2.03 LINK MG MG A 202 O HOH A 473 1555 1555 1.97 LINK MG MG A 203 O HOH A 340 1555 1555 2.03 LINK MG MG A 203 O HOH A 381 1555 4655 2.17 LINK MG MG A 203 O HOH A 414 1555 1555 1.97 LINK MG MG A 203 O HOH A 427 1555 1555 2.09 LINK MG MG A 203 O HOH A 463 1555 1665 1.90 LINK MG MG A 204 O HOH A 302 1555 6655 2.24 LINK MG MG A 204 O HOH A 331 1555 6655 2.08 LINK MG MG A 204 O HOH A 360 1555 1555 2.17 LINK MG MG A 204 O HOH A 444 1555 6655 2.82 LINK MG MG A 204 O HOH A 464 1555 6655 1.95 LINK MG MG A 204 O HOH A 474 1555 6655 2.06 SITE 1 AC1 23 SER A 9 ASN A 10 THR A 11 GLY A 12 SITE 2 AC1 23 LYS A 13 THR A 14 PRO A 55 THR A 56 SITE 3 AC1 23 LEU A 57 GLY A 58 GLY A 60 LEU A 96 SITE 4 AC1 23 GLY A 97 ASP A 98 TYR A 102 ASN A 105 SITE 5 AC1 23 TYR A 106 LEU A 107 ASP A 154 HOH A 344 SITE 6 AC1 23 HOH A 345 HOH A 347 HOH A 375 SITE 1 AC2 5 ASP A 131 HOH A 398 HOH A 407 HOH A 459 SITE 2 AC2 5 HOH A 473 SITE 1 AC3 6 ASP A 26 HOH A 340 HOH A 381 HOH A 414 SITE 2 AC3 6 HOH A 427 HOH A 463 SITE 1 AC4 8 GLU A 59 GLU A 82 HOH A 302 HOH A 331 SITE 2 AC4 8 HOH A 360 HOH A 444 HOH A 464 HOH A 474 CRYST1 39.873 39.873 178.656 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025080 0.014480 0.000000 0.00000 SCALE2 0.000000 0.028960 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005597 0.00000