HEADER HYDROLASE 02-JUN-16 5KAR TITLE MURINE ACID SPHINGOMYELINASE-LIKE PHOSPHODIESTERASE 3B (SMPDL3B) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACID SPHINGOMYELINASE-LIKE PHOSPHODIESTERASE 3B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 19-435; COMPND 5 SYNONYM: ASM-LIKE PHOSPHODIESTERASE 3B; COMPND 6 EC: 3.1.4.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SMPDL3B, ASML3B; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS PHOSPHOESTERASE, EXTRACELLULAR, MEMBRANE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GORELIK,K.ILLES,L.X.HEINZ,G.SUPERTI-FURGA,B.NAGAR REVDAT 5 29-JUL-20 5KAR 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 08-JAN-20 5KAR 1 JRNL REVDAT 3 23-NOV-16 5KAR 1 JRNL REVDAT 2 12-OCT-16 5KAR 1 JRNL REVDAT 1 05-OCT-16 5KAR 0 JRNL AUTH A.GORELIK,L.X.HEINZ,K.ILLES,G.SUPERTI-FURGA,B.NAGAR JRNL TITL CRYSTAL STRUCTURE OF THE ACID SPHINGOMYELINASE-LIKE JRNL TITL 2 PHOSPHODIESTERASE SMPDL3B PROVIDES INSIGHTS INTO JRNL TITL 3 DETERMINANTS OF SUBSTRATE SPECIFICITY. JRNL REF J.BIOL.CHEM. V. 291 24054 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27687724 JRNL DOI 10.1074/JBC.M116.755801 REMARK 2 REMARK 2 RESOLUTION. 1.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 147421 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.152 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 7396 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.8522 - 3.5479 0.99 5166 275 0.1463 0.1464 REMARK 3 2 3.5479 - 2.8164 1.00 5093 293 0.1347 0.1465 REMARK 3 3 2.8164 - 2.4604 1.00 5087 253 0.1281 0.1310 REMARK 3 4 2.4604 - 2.2355 1.00 5059 270 0.1149 0.1298 REMARK 3 5 2.2355 - 2.0753 1.00 5118 256 0.1103 0.1275 REMARK 3 6 2.0753 - 1.9529 1.00 5029 262 0.1099 0.1289 REMARK 3 7 1.9529 - 1.8551 1.00 5093 264 0.1098 0.1287 REMARK 3 8 1.8551 - 1.7744 1.00 5009 279 0.1102 0.1413 REMARK 3 9 1.7744 - 1.7061 1.00 5035 267 0.1020 0.1265 REMARK 3 10 1.7061 - 1.6472 1.00 5003 265 0.1005 0.1321 REMARK 3 11 1.6472 - 1.5957 1.00 5046 267 0.0997 0.1330 REMARK 3 12 1.5957 - 1.5501 1.00 5012 265 0.1004 0.1316 REMARK 3 13 1.5501 - 1.5093 1.00 5014 266 0.1040 0.1473 REMARK 3 14 1.5093 - 1.4725 0.99 4974 263 0.1137 0.1524 REMARK 3 15 1.4725 - 1.4390 0.99 5017 267 0.1251 0.1725 REMARK 3 16 1.4390 - 1.4084 0.99 5003 264 0.1350 0.1437 REMARK 3 17 1.4084 - 1.3802 0.99 4951 261 0.1406 0.1857 REMARK 3 18 1.3802 - 1.3541 0.99 5000 263 0.1505 0.1663 REMARK 3 19 1.3541 - 1.3300 0.99 4981 261 0.1548 0.2027 REMARK 3 20 1.3300 - 1.3074 0.99 4903 258 0.1715 0.2216 REMARK 3 21 1.3074 - 1.2863 0.99 5008 261 0.1935 0.2462 REMARK 3 22 1.2863 - 1.2665 0.98 4935 261 0.2064 0.2432 REMARK 3 23 1.2665 - 1.2479 0.98 4903 259 0.2239 0.2467 REMARK 3 24 1.2479 - 1.2303 0.92 4633 245 0.2509 0.2941 REMARK 3 25 1.2303 - 1.2137 0.86 4299 228 0.2664 0.2931 REMARK 3 26 1.2137 - 1.1979 0.78 3948 209 0.2889 0.2863 REMARK 3 27 1.1979 - 1.1830 0.72 3600 189 0.3060 0.3103 REMARK 3 28 1.1830 - 1.1687 0.63 3171 165 0.3377 0.3478 REMARK 3 29 1.1687 - 1.1551 0.54 2676 142 0.3600 0.3603 REMARK 3 30 1.1551 - 1.1421 0.45 2259 118 0.3731 0.3742 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3649 REMARK 3 ANGLE : 1.067 5019 REMARK 3 CHIRALITY : 0.083 562 REMARK 3 PLANARITY : 0.009 641 REMARK 3 DIHEDRAL : 13.564 1363 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KAR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000221967. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9179 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 147638 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.140 REMARK 200 RESOLUTION RANGE LOW (A) : 36.833 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, AMMONIUM NITRATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 743 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 909 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 994 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1014 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1060 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1063 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 9 REMARK 465 ARG A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 LYS A 17 REMARK 465 LEU A 18 REMARK 465 GLN A 19 REMARK 465 LEU A 432 REMARK 465 GLY A 433 REMARK 465 ALA A 434 REMARK 465 LYS A 435 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 NO3 A 513 O HOH A 601 2.12 REMARK 500 O HOH A 657 O HOH A 988 2.16 REMARK 500 OD1 ASP A 328 O HOH A 602 2.17 REMARK 500 O HOH A 942 O HOH A 1086 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1012 O HOH A 1036 2555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 30 71.70 39.25 REMARK 500 ASN A 55 59.68 39.73 REMARK 500 ASP A 93 82.32 76.71 REMARK 500 LEU A 103 82.71 -153.60 REMARK 500 ASP A 136 49.74 -88.96 REMARK 500 ASN A 141 -9.43 74.84 REMARK 500 ALA A 145 36.36 -86.92 REMARK 500 ALA A 186 68.61 -158.05 REMARK 500 HIS A 236 -69.35 -94.25 REMARK 500 HIS A 277 -38.67 75.64 REMARK 500 HIS A 279 -8.83 78.23 REMARK 500 TRP A 306 125.13 -39.85 REMARK 500 ASP A 369 -169.29 -166.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1096 DISTANCE = 7.72 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 28 OD1 REMARK 620 2 HIS A 30 NE2 113.2 REMARK 620 3 ASP A 93 OD2 85.9 88.6 REMARK 620 4 HIS A 279 NE2 93.2 99.2 171.8 REMARK 620 5 HOH A 613 O 101.0 138.2 70.0 102.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD2 REMARK 620 2 ASN A 134 OD1 102.6 REMARK 620 3 HIS A 236 NE2 86.7 89.7 REMARK 620 4 HIS A 277 ND1 161.8 95.1 97.9 REMARK 620 5 HOH A 613 O 72.0 146.8 121.8 90.8 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KAS RELATED DB: PDB DBREF 5KAR A 19 435 UNP P58242 ASM3B_MOUSE 19 435 SEQADV 5KAR ASP A 9 UNP P58242 EXPRESSION TAG SEQADV 5KAR ARG A 10 UNP P58242 EXPRESSION TAG SEQADV 5KAR HIS A 11 UNP P58242 EXPRESSION TAG SEQADV 5KAR HIS A 12 UNP P58242 EXPRESSION TAG SEQADV 5KAR HIS A 13 UNP P58242 EXPRESSION TAG SEQADV 5KAR HIS A 14 UNP P58242 EXPRESSION TAG SEQADV 5KAR HIS A 15 UNP P58242 EXPRESSION TAG SEQADV 5KAR HIS A 16 UNP P58242 EXPRESSION TAG SEQADV 5KAR LYS A 17 UNP P58242 EXPRESSION TAG SEQADV 5KAR LEU A 18 UNP P58242 EXPRESSION TAG SEQRES 1 A 427 ASP ARG HIS HIS HIS HIS HIS HIS LYS LEU GLN LEU GLY SEQRES 2 A 427 ARG PHE TRP HIS ILE SER ASP LEU HIS LEU ASP PRO ASN SEQRES 3 A 427 TYR THR VAL SER LYS ASP PRO LEU GLN VAL CYS PRO SER SEQRES 4 A 427 ALA GLY SER GLN PRO VAL LEU ASN ALA GLY PRO TRP GLY SEQRES 5 A 427 ASP TYR LEU CYS ASP SER PRO TRP ALA LEU ILE ASN SER SEQRES 6 A 427 SER LEU TYR ALA MET LYS GLU ILE GLU PRO LYS PRO ASP SEQRES 7 A 427 PHE ILE LEU TRP THR GLY ASP ASP THR PRO HIS VAL PRO SEQRES 8 A 427 ASN GLU SER LEU GLY GLU ALA ALA VAL LEU ALA ILE VAL SEQRES 9 A 427 GLU ARG LEU THR ASN LEU ILE LYS GLU VAL PHE PRO ASP SEQRES 10 A 427 THR LYS VAL TYR ALA ALA LEU GLY ASN HIS ASP PHE HIS SEQRES 11 A 427 PRO LYS ASN GLN PHE PRO ALA GLN SER ASN ARG ILE TYR SEQRES 12 A 427 ASN GLN VAL ALA GLU LEU TRP ARG PRO TRP LEU SER ASN SEQRES 13 A 427 GLU SER TYR ALA LEU PHE LYS ARG GLY ALA PHE TYR SER SEQRES 14 A 427 GLU LYS LEU PRO GLY PRO SER ARG ALA GLY ARG VAL VAL SEQRES 15 A 427 VAL LEU ASN THR ASN LEU TYR TYR SER ASN ASN GLU GLN SEQRES 16 A 427 THR ALA GLY MET ALA ASP PRO GLY GLU GLN PHE ARG TRP SEQRES 17 A 427 LEU GLY ASP VAL LEU SER ASN ALA SER ARG ASP GLY GLU SEQRES 18 A 427 MET VAL TYR VAL ILE GLY HIS VAL PRO PRO GLY PHE PHE SEQRES 19 A 427 GLU LYS THR GLN ASN LYS ALA TRP PHE ARG GLU SER PHE SEQRES 20 A 427 ASN GLU GLU TYR LEU LYS VAL ILE GLN LYS HIS HIS ARG SEQRES 21 A 427 VAL ILE ALA GLY GLN PHE PHE GLY HIS HIS HIS THR ASP SEQRES 22 A 427 SER PHE ARG MET PHE TYR ASP ASN THR GLY ALA PRO ILE SEQRES 23 A 427 ASN VAL MET PHE LEU THR PRO GLY VAL THR PRO TRP LYS SEQRES 24 A 427 THR THR LEU PRO GLY VAL VAL ASP GLY ALA ASN ASN PRO SEQRES 25 A 427 GLY ILE ARG ILE PHE GLU TYR ASP ARG ALA THR LEU ASN SEQRES 26 A 427 LEU LYS ASP LEU VAL THR TYR PHE LEU ASN LEU ARG GLN SEQRES 27 A 427 ALA ASN VAL GLN GLU THR PRO ARG TRP GLU GLN GLU TYR SEQRES 28 A 427 ARG LEU THR GLU ALA TYR GLN VAL PRO ASP ALA SER VAL SEQRES 29 A 427 SER SER MET HIS THR ALA LEU THR ARG ILE ALA SER GLU SEQRES 30 A 427 PRO HIS ILE LEU GLN ARG TYR TYR VAL TYR ASN SER VAL SEQRES 31 A 427 SER TYR ASN HIS LEU THR CYS GLU ASP SER CYS ARG ILE SEQRES 32 A 427 GLU HIS VAL CYS ALA ILE GLN HIS VAL ALA PHE ASN THR SEQRES 33 A 427 TYR ALA THR CYS LEU HIS GLY LEU GLY ALA LYS HET NAG B 1 27 HET NAG B 2 28 HET NAG C 1 27 HET NAG C 2 27 HET BMA C 3 20 HET MAN C 4 22 HET MAN C 5 22 HET NAG D 1 26 HET NAG D 2 28 HET FUC D 3 21 HET ZN A 501 1 HET ZN A 502 1 HET NO3 A 513 4 HET NO3 A 514 4 HET GOL A 515 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM ZN ZINC ION HETNAM NO3 NITRATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 6(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 3 MAN 2(C6 H12 O6) FORMUL 4 FUC C6 H12 O5 FORMUL 5 ZN 2(ZN 2+) FORMUL 7 NO3 2(N O3 1-) FORMUL 9 GOL C3 H8 O3 FORMUL 10 HOH *496(H2 O) HELIX 1 AA1 CYS A 45 GLY A 49 5 5 HELIX 2 AA2 PRO A 67 GLU A 82 1 16 HELIX 3 AA3 PRO A 99 LEU A 103 5 5 HELIX 4 AA4 GLY A 104 PHE A 123 1 20 HELIX 5 AA5 ASN A 148 ARG A 159 1 12 HELIX 6 AA6 PRO A 160 LEU A 162 5 3 HELIX 7 AA7 SER A 163 ALA A 174 1 12 HELIX 8 AA8 ASN A 193 TYR A 198 5 6 HELIX 9 AA9 ASN A 201 ALA A 205 5 5 HELIX 10 AB1 ASP A 209 GLY A 211 5 3 HELIX 11 AB2 GLU A 212 GLY A 228 1 17 HELIX 12 AB3 ARG A 252 HIS A 267 1 16 HELIX 13 AB4 ASN A 343 ASN A 348 1 6 HELIX 14 AB5 LEU A 361 GLN A 366 1 6 HELIX 15 AB6 SER A 371 GLU A 385 1 15 HELIX 16 AB7 GLU A 385 SER A 397 1 13 HELIX 17 AB8 GLU A 406 HIS A 419 1 14 HELIX 18 AB9 ALA A 421 HIS A 430 1 10 SHEET 1 AA1 6 VAL A 128 ALA A 130 0 SHEET 2 AA1 6 PHE A 87 TRP A 90 1 N ILE A 88 O TYR A 129 SHEET 3 AA1 6 GLY A 21 ILE A 26 1 N TRP A 24 O LEU A 89 SHEET 4 AA1 6 GLY A 321 TYR A 327 -1 O TYR A 327 N GLY A 21 SHEET 5 AA1 6 LEU A 334 PHE A 341 -1 O TYR A 340 N ILE A 322 SHEET 6 AA1 6 GLU A 356 ARG A 360 -1 O GLU A 358 N THR A 339 SHEET 1 AA2 6 TYR A 176 LYS A 179 0 SHEET 2 AA2 6 GLY A 187 VAL A 191 -1 O VAL A 191 N TYR A 176 SHEET 3 AA2 6 MET A 230 ILE A 234 1 O TYR A 232 N VAL A 190 SHEET 4 AA2 6 ILE A 270 PHE A 275 1 O GLY A 272 N VAL A 233 SHEET 5 AA2 6 PRO A 293 LEU A 299 1 O PHE A 298 N GLN A 273 SHEET 6 AA2 6 SER A 282 TYR A 287 -1 N PHE A 286 O ILE A 294 SSBOND 1 CYS A 45 CYS A 64 1555 1555 2.03 SSBOND 2 CYS A 405 CYS A 409 1555 1555 2.06 SSBOND 3 CYS A 415 CYS A 428 1555 1555 2.03 LINK ND2 ASN A 34 C1 NAG D 1 1555 1555 1.46 LINK ND2 ASN A 72 C1 NAG B 1 1555 1555 1.43 LINK ND2 ASN A 223 C1 NAG C 1 1555 1555 1.43 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.42 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.42 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.47 LINK O6 BMA C 3 C1 MAN C 5 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.43 LINK O6 NAG D 1 C1 FUC D 3 1555 1555 1.44 LINK OD1 ASP A 28 ZN ZN A 502 1555 1555 2.02 LINK NE2 HIS A 30 ZN ZN A 502 1555 1555 2.06 LINK OD2 ASP A 93 ZN ZN A 501 1555 1555 2.16 LINK OD2 ASP A 93 ZN ZN A 502 1555 1555 2.32 LINK OD1 ASN A 134 ZN ZN A 501 1555 1555 2.06 LINK NE2 HIS A 236 ZN ZN A 501 1555 1555 2.10 LINK ND1 HIS A 277 ZN ZN A 501 1555 1555 2.14 LINK NE2 HIS A 279 ZN ZN A 502 1555 1555 2.09 LINK ZN ZN A 501 O HOH A 613 1555 1555 2.05 LINK ZN ZN A 502 O HOH A 613 1555 1555 1.96 CISPEP 1 HIS A 138 PRO A 139 0 -5.26 CISPEP 2 GLY A 182 PRO A 183 0 6.64 CRYST1 50.892 47.031 93.861 90.00 98.07 90.00 P 1 2 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019649 0.000000 0.002786 0.00000 SCALE2 0.000000 0.021263 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010761 0.00000