HEADER TRANSCRIPTION/DNA 03-JUN-16 5KBJ TITLE STRUCTURE OF REP-DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPLICATION INITIATOR A, N-TERMINAL; COMPND 3 CHAIN: A, B, C, H, D, E, F, G; COMPND 4 FRAGMENT: UNP RESIDUES 2-133; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (32-MER); COMPND 8 CHAIN: R; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (32-MER); COMPND 12 CHAIN: W; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: SAP042A_013, SAP058A_012, SAP071A_014; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS REPLICATION INITIATION, REP PROTEIN, S. AUREUS, TRANSCRIPTION-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.SCHUMACHER REVDAT 3 27-SEP-23 5KBJ 1 REMARK REVDAT 2 22-NOV-17 5KBJ 1 REMARK REVDAT 1 29-JUN-16 5KBJ 0 JRNL AUTH M.A.SCHUMACHER,N.K.TONTHAT,S.M.KWONG,N.B.CHINNAM,M.A.LIU, JRNL AUTH 2 R.A.SKURRAY,N.FIRTH JRNL TITL MECHANISM OF STAPHYLOCOCCAL MULTIRESISTANCE PLASMID JRNL TITL 2 REPLICATION ORIGIN ASSEMBLY BY THE REPA PROTEIN. JRNL REF PROC. NATL. ACAD. SCI. V. 111 9121 2014 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 24927575 JRNL DOI 10.1073/PNAS.1406065111 REMARK 2 REMARK 2 RESOLUTION. 3.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 97.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 28484 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 12.930 REMARK 3 FREE R VALUE TEST SET COUNT : 3682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 97.1518 - 6.6514 0.98 2578 372 0.2135 0.2319 REMARK 3 2 6.6514 - 5.2795 0.96 2515 392 0.2550 0.2941 REMARK 3 3 5.2795 - 4.6122 0.93 2439 344 0.1938 0.2468 REMARK 3 4 4.6122 - 4.1905 0.94 2490 353 0.1712 0.2367 REMARK 3 5 4.1905 - 3.8901 0.95 2448 378 0.1923 0.2599 REMARK 3 6 3.8901 - 3.6607 0.95 2514 356 0.2088 0.2845 REMARK 3 7 3.6607 - 3.4774 0.94 2473 351 0.2264 0.2868 REMARK 3 8 3.4774 - 3.3260 0.94 2485 390 0.2684 0.3488 REMARK 3 9 3.3260 - 3.1980 0.94 2449 396 0.3008 0.3669 REMARK 3 10 3.1980 - 3.0876 0.93 2411 350 0.3685 0.4018 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 0.60 REMARK 3 SHRINKAGE RADIUS : 0.27 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 50.27 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 88.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 28.52350 REMARK 3 B22 (A**2) : -4.33480 REMARK 3 B33 (A**2) : -24.18870 REMARK 3 B12 (A**2) : 20.93950 REMARK 3 B13 (A**2) : -19.36350 REMARK 3 B23 (A**2) : -4.58260 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 10368 REMARK 3 ANGLE : 0.641 14206 REMARK 3 CHIRALITY : 0.039 1542 REMARK 3 PLANARITY : 0.002 1580 REMARK 3 DIHEDRAL : 19.547 4162 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KBJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000221993. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28484 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.090 REMARK 200 RESOLUTION RANGE LOW (A) : 97.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4PQL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 400, 0.1 M SODIUM/POTASSIUM REMARK 280 PHOSPHATE (PH 6.9), 4% PEG 3350, AND 10% POLYETHYLENE GLYCOL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, H, R, W REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 2 REMARK 465 ASN A 3 REMARK 465 GLN B 2 REMARK 465 ASN B 3 REMARK 465 GLN C 2 REMARK 465 ASN C 3 REMARK 465 ARG C 100 REMARK 465 GLY C 101 REMARK 465 LEU C 102 REMARK 465 ASN C 103 REMARK 465 LYS C 104 REMARK 465 GLN H 2 REMARK 465 ASN H 3 REMARK 465 GLU H 131 REMARK 465 PRO H 132 REMARK 465 TYR H 133 REMARK 465 GLN D 2 REMARK 465 ASN D 3 REMARK 465 GLN E 2 REMARK 465 ASN E 3 REMARK 465 GLN F 2 REMARK 465 ASN F 3 REMARK 465 GLU G 131 REMARK 465 PRO G 132 REMARK 465 TYR G 133 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 4 CB REMARK 470 TYR C 133 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR E 133 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR F 133 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA R 10 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG R 11 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT R 12 C1' - O4' - C4' ANGL. DEV. = -7.4 DEGREES REMARK 500 DT R 12 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 DG R 15 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA R 16 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DA R 17 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DA R 19 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DA R 19 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA R 23 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC R 28 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA W 9 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT W 13 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC W 14 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT W 18 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT W 19 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC W 25 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 16 -166.91 -126.79 REMARK 500 THR A 25 -32.71 -131.58 REMARK 500 ASN A 31 -8.84 -56.63 REMARK 500 VAL A 65 34.04 -91.76 REMARK 500 ASN A 76 83.39 49.15 REMARK 500 CYS A 77 -160.14 -166.50 REMARK 500 ASN A 91 30.42 -96.51 REMARK 500 ASP A 92 -13.21 -149.89 REMARK 500 ARG A 100 -7.52 -152.48 REMARK 500 LEU A 102 -122.75 61.72 REMARK 500 VAL A 130 -149.23 -66.70 REMARK 500 GLU A 131 -71.08 -73.32 REMARK 500 PRO A 132 99.72 -52.41 REMARK 500 TYR B 17 79.97 -102.81 REMARK 500 SER B 54 34.36 75.50 REMARK 500 TRP B 55 47.45 -81.30 REMARK 500 ASP B 57 -142.00 -94.12 REMARK 500 ASP B 59 6.95 -69.41 REMARK 500 ASN B 76 68.32 61.99 REMARK 500 CYS B 77 -160.02 -160.64 REMARK 500 ARG B 99 85.73 -62.25 REMARK 500 LEU B 102 -123.60 50.55 REMARK 500 PRO B 105 -145.87 -61.58 REMARK 500 THR B 116 -169.42 -102.14 REMARK 500 ASN B 128 51.82 -111.04 REMARK 500 ASP B 129 43.44 -99.93 REMARK 500 TRP C 55 41.31 -92.48 REMARK 500 VAL C 65 72.35 -113.86 REMARK 500 LEU C 95 140.03 -173.20 REMARK 500 TYR H 29 31.67 -84.81 REMARK 500 TRP H 55 40.53 -78.76 REMARK 500 ASN H 76 70.05 52.11 REMARK 500 ARG H 99 -175.89 -64.31 REMARK 500 ARG H 100 5.45 -153.26 REMARK 500 LEU H 102 -71.15 -85.65 REMARK 500 PRO H 113 -179.92 -64.13 REMARK 500 TYR D 5 -159.86 -70.64 REMARK 500 LEU D 32 152.05 -49.09 REMARK 500 TRP D 55 69.52 -68.54 REMARK 500 LYS D 79 -70.19 -43.76 REMARK 500 LEU D 102 -90.64 57.27 REMARK 500 ASN D 103 -11.83 -174.16 REMARK 500 PRO D 113 -164.19 -67.61 REMARK 500 THR D 116 -158.10 -94.12 REMARK 500 GLU D 126 15.26 -68.74 REMARK 500 VAL D 130 -165.02 -68.35 REMARK 500 THR E 25 -41.43 -133.29 REMARK 500 VAL E 65 63.57 -103.51 REMARK 500 ASN E 76 80.23 58.15 REMARK 500 CYS E 77 -177.93 -171.39 REMARK 500 REMARK 500 THIS ENTRY HAS 77 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PQK RELATED DB: PDB REMARK 900 RELATED ID: 4PQL RELATED DB: PDB REMARK 900 RELATED ID: 4PT7 RELATED DB: PDB REMARK 900 RELATED ID: 4PTA RELATED DB: PDB DBREF 5KBJ A 2 133 UNP D2JDC3 D2JDC3_STAAU 2 133 DBREF 5KBJ B 2 133 UNP D2JDC3 D2JDC3_STAAU 2 133 DBREF 5KBJ C 2 133 UNP D2JDC3 D2JDC3_STAAU 2 133 DBREF 5KBJ H 2 133 UNP D2JDC3 D2JDC3_STAAU 2 133 DBREF 5KBJ D 2 133 UNP D2JDC3 D2JDC3_STAAU 2 133 DBREF 5KBJ E 2 133 UNP D2JDC3 D2JDC3_STAAU 2 133 DBREF 5KBJ F 2 133 UNP D2JDC3 D2JDC3_STAAU 2 133 DBREF 5KBJ G 2 133 UNP D2JDC3 D2JDC3_STAAU 2 133 DBREF 5KBJ R 2 33 PDB 5KBJ 5KBJ 2 33 DBREF 5KBJ W 3 34 PDB 5KBJ 5KBJ 3 34 SEQRES 1 A 132 GLN ASN GLN TYR PHE THR VAL GLN GLU ASN TYR LYS GLU SEQRES 2 A 132 ARG PHE TYR GLN ILE PRO LYS VAL PHE PHE THR SER GLU SEQRES 3 A 132 ASN TYR LYS ASN LEU THR ASN ASP MET LYS ILE ALA TYR SEQRES 4 A 132 ALA ILE LEU ARG ASP ARG LEU ASN LEU SER ILE LYS ASN SEQRES 5 A 132 SER TRP VAL ASP GLU ASP GLY ASN ILE TYR PHE VAL TYR SEQRES 6 A 132 SER ASN GLU LYS LEU MET GLU ILE LEU ASN CYS LYS LYS SEQRES 7 A 132 GLU LYS LEU THR LYS ILE LYS LYS GLY LEU GLU ASN ASP SEQRES 8 A 132 GLY LEU LEU ILE GLN LYS ARG ARG GLY LEU ASN LYS PRO SEQRES 9 A 132 ASN ILE LEU TYR LEU MET LYS PRO ILE VAL THR GLU ARG SEQRES 10 A 132 ASP ILE TYR LYS ILE GLU LYS GLU GLU ASN ASP VAL GLU SEQRES 11 A 132 PRO TYR SEQRES 1 B 132 GLN ASN GLN TYR PHE THR VAL GLN GLU ASN TYR LYS GLU SEQRES 2 B 132 ARG PHE TYR GLN ILE PRO LYS VAL PHE PHE THR SER GLU SEQRES 3 B 132 ASN TYR LYS ASN LEU THR ASN ASP MET LYS ILE ALA TYR SEQRES 4 B 132 ALA ILE LEU ARG ASP ARG LEU ASN LEU SER ILE LYS ASN SEQRES 5 B 132 SER TRP VAL ASP GLU ASP GLY ASN ILE TYR PHE VAL TYR SEQRES 6 B 132 SER ASN GLU LYS LEU MET GLU ILE LEU ASN CYS LYS LYS SEQRES 7 B 132 GLU LYS LEU THR LYS ILE LYS LYS GLY LEU GLU ASN ASP SEQRES 8 B 132 GLY LEU LEU ILE GLN LYS ARG ARG GLY LEU ASN LYS PRO SEQRES 9 B 132 ASN ILE LEU TYR LEU MET LYS PRO ILE VAL THR GLU ARG SEQRES 10 B 132 ASP ILE TYR LYS ILE GLU LYS GLU GLU ASN ASP VAL GLU SEQRES 11 B 132 PRO TYR SEQRES 1 C 132 GLN ASN GLN TYR PHE THR VAL GLN GLU ASN TYR LYS GLU SEQRES 2 C 132 ARG PHE TYR GLN ILE PRO LYS VAL PHE PHE THR SER GLU SEQRES 3 C 132 ASN TYR LYS ASN LEU THR ASN ASP MET LYS ILE ALA TYR SEQRES 4 C 132 ALA ILE LEU ARG ASP ARG LEU ASN LEU SER ILE LYS ASN SEQRES 5 C 132 SER TRP VAL ASP GLU ASP GLY ASN ILE TYR PHE VAL TYR SEQRES 6 C 132 SER ASN GLU LYS LEU MET GLU ILE LEU ASN CYS LYS LYS SEQRES 7 C 132 GLU LYS LEU THR LYS ILE LYS LYS GLY LEU GLU ASN ASP SEQRES 8 C 132 GLY LEU LEU ILE GLN LYS ARG ARG GLY LEU ASN LYS PRO SEQRES 9 C 132 ASN ILE LEU TYR LEU MET LYS PRO ILE VAL THR GLU ARG SEQRES 10 C 132 ASP ILE TYR LYS ILE GLU LYS GLU GLU ASN ASP VAL GLU SEQRES 11 C 132 PRO TYR SEQRES 1 H 132 GLN ASN GLN TYR PHE THR VAL GLN GLU ASN TYR LYS GLU SEQRES 2 H 132 ARG PHE TYR GLN ILE PRO LYS VAL PHE PHE THR SER GLU SEQRES 3 H 132 ASN TYR LYS ASN LEU THR ASN ASP MET LYS ILE ALA TYR SEQRES 4 H 132 ALA ILE LEU ARG ASP ARG LEU ASN LEU SER ILE LYS ASN SEQRES 5 H 132 SER TRP VAL ASP GLU ASP GLY ASN ILE TYR PHE VAL TYR SEQRES 6 H 132 SER ASN GLU LYS LEU MET GLU ILE LEU ASN CYS LYS LYS SEQRES 7 H 132 GLU LYS LEU THR LYS ILE LYS LYS GLY LEU GLU ASN ASP SEQRES 8 H 132 GLY LEU LEU ILE GLN LYS ARG ARG GLY LEU ASN LYS PRO SEQRES 9 H 132 ASN ILE LEU TYR LEU MET LYS PRO ILE VAL THR GLU ARG SEQRES 10 H 132 ASP ILE TYR LYS ILE GLU LYS GLU GLU ASN ASP VAL GLU SEQRES 11 H 132 PRO TYR SEQRES 1 D 132 GLN ASN GLN TYR PHE THR VAL GLN GLU ASN TYR LYS GLU SEQRES 2 D 132 ARG PHE TYR GLN ILE PRO LYS VAL PHE PHE THR SER GLU SEQRES 3 D 132 ASN TYR LYS ASN LEU THR ASN ASP MET LYS ILE ALA TYR SEQRES 4 D 132 ALA ILE LEU ARG ASP ARG LEU ASN LEU SER ILE LYS ASN SEQRES 5 D 132 SER TRP VAL ASP GLU ASP GLY ASN ILE TYR PHE VAL TYR SEQRES 6 D 132 SER ASN GLU LYS LEU MET GLU ILE LEU ASN CYS LYS LYS SEQRES 7 D 132 GLU LYS LEU THR LYS ILE LYS LYS GLY LEU GLU ASN ASP SEQRES 8 D 132 GLY LEU LEU ILE GLN LYS ARG ARG GLY LEU ASN LYS PRO SEQRES 9 D 132 ASN ILE LEU TYR LEU MET LYS PRO ILE VAL THR GLU ARG SEQRES 10 D 132 ASP ILE TYR LYS ILE GLU LYS GLU GLU ASN ASP VAL GLU SEQRES 11 D 132 PRO TYR SEQRES 1 E 132 GLN ASN GLN TYR PHE THR VAL GLN GLU ASN TYR LYS GLU SEQRES 2 E 132 ARG PHE TYR GLN ILE PRO LYS VAL PHE PHE THR SER GLU SEQRES 3 E 132 ASN TYR LYS ASN LEU THR ASN ASP MET LYS ILE ALA TYR SEQRES 4 E 132 ALA ILE LEU ARG ASP ARG LEU ASN LEU SER ILE LYS ASN SEQRES 5 E 132 SER TRP VAL ASP GLU ASP GLY ASN ILE TYR PHE VAL TYR SEQRES 6 E 132 SER ASN GLU LYS LEU MET GLU ILE LEU ASN CYS LYS LYS SEQRES 7 E 132 GLU LYS LEU THR LYS ILE LYS LYS GLY LEU GLU ASN ASP SEQRES 8 E 132 GLY LEU LEU ILE GLN LYS ARG ARG GLY LEU ASN LYS PRO SEQRES 9 E 132 ASN ILE LEU TYR LEU MET LYS PRO ILE VAL THR GLU ARG SEQRES 10 E 132 ASP ILE TYR LYS ILE GLU LYS GLU GLU ASN ASP VAL GLU SEQRES 11 E 132 PRO TYR SEQRES 1 F 132 GLN ASN GLN TYR PHE THR VAL GLN GLU ASN TYR LYS GLU SEQRES 2 F 132 ARG PHE TYR GLN ILE PRO LYS VAL PHE PHE THR SER GLU SEQRES 3 F 132 ASN TYR LYS ASN LEU THR ASN ASP MET LYS ILE ALA TYR SEQRES 4 F 132 ALA ILE LEU ARG ASP ARG LEU ASN LEU SER ILE LYS ASN SEQRES 5 F 132 SER TRP VAL ASP GLU ASP GLY ASN ILE TYR PHE VAL TYR SEQRES 6 F 132 SER ASN GLU LYS LEU MET GLU ILE LEU ASN CYS LYS LYS SEQRES 7 F 132 GLU LYS LEU THR LYS ILE LYS LYS GLY LEU GLU ASN ASP SEQRES 8 F 132 GLY LEU LEU ILE GLN LYS ARG ARG GLY LEU ASN LYS PRO SEQRES 9 F 132 ASN ILE LEU TYR LEU MET LYS PRO ILE VAL THR GLU ARG SEQRES 10 F 132 ASP ILE TYR LYS ILE GLU LYS GLU GLU ASN ASP VAL GLU SEQRES 11 F 132 PRO TYR SEQRES 1 G 132 GLN ASN GLN TYR PHE THR VAL GLN GLU ASN TYR LYS GLU SEQRES 2 G 132 ARG PHE TYR GLN ILE PRO LYS VAL PHE PHE THR SER GLU SEQRES 3 G 132 ASN TYR LYS ASN LEU THR ASN ASP MET LYS ILE ALA TYR SEQRES 4 G 132 ALA ILE LEU ARG ASP ARG LEU ASN LEU SER ILE LYS ASN SEQRES 5 G 132 SER TRP VAL ASP GLU ASP GLY ASN ILE TYR PHE VAL TYR SEQRES 6 G 132 SER ASN GLU LYS LEU MET GLU ILE LEU ASN CYS LYS LYS SEQRES 7 G 132 GLU LYS LEU THR LYS ILE LYS LYS GLY LEU GLU ASN ASP SEQRES 8 G 132 GLY LEU LEU ILE GLN LYS ARG ARG GLY LEU ASN LYS PRO SEQRES 9 G 132 ASN ILE LEU TYR LEU MET LYS PRO ILE VAL THR GLU ARG SEQRES 10 G 132 ASP ILE TYR LYS ILE GLU LYS GLU GLU ASN ASP VAL GLU SEQRES 11 G 132 PRO TYR SEQRES 1 R 32 DC DG DT DC DC DA DG DA DA DG DT DT DC SEQRES 2 R 32 DG DA DA DA DA DT DC DG DA DA DC DG DT SEQRES 3 R 32 DC DC DA DG DA DT SEQRES 1 W 32 DA DT DC DT DG DG DA DC DG DT DT DC DG SEQRES 2 W 32 DA DT DT DT DT DC DG DA DA DC DT DT DC SEQRES 3 W 32 DT DG DG DA DC DG HELIX 1 AA1 THR A 7 TYR A 12 1 6 HELIX 2 AA2 PRO A 20 THR A 25 5 6 HELIX 3 AA3 SER A 26 ASN A 31 1 6 HELIX 4 AA4 THR A 33 ASN A 53 1 21 HELIX 5 AA5 SER A 67 LEU A 75 1 9 HELIX 6 AA6 LYS A 78 ASN A 91 1 14 HELIX 7 AA7 THR A 116 ASP A 129 1 14 HELIX 8 AA8 THR B 7 LYS B 13 1 7 HELIX 9 AA9 PRO B 20 THR B 25 5 6 HELIX 10 AB1 SER B 26 LYS B 30 5 5 HELIX 11 AB2 ASP B 35 ASN B 53 1 19 HELIX 12 AB3 SER B 67 LEU B 75 1 9 HELIX 13 AB4 LYS B 78 ASP B 92 1 15 HELIX 14 AB5 THR B 116 ASN B 128 1 13 HELIX 15 AB6 THR C 7 GLU C 14 1 8 HELIX 16 AB7 LYS C 21 SER C 26 1 6 HELIX 17 AB8 THR C 33 ASN C 53 1 21 HELIX 18 AB9 SER C 67 ASN C 76 1 10 HELIX 19 AC1 LYS C 78 ASP C 92 1 15 HELIX 20 AC2 THR C 116 ASN C 128 1 13 HELIX 21 AC3 THR H 7 GLU H 14 1 8 HELIX 22 AC4 VAL H 22 THR H 25 5 4 HELIX 23 AC5 SER H 26 ASN H 31 5 6 HELIX 24 AC6 THR H 33 ARG H 46 1 14 HELIX 25 AC7 ARG H 46 ILE H 51 1 6 HELIX 26 AC8 SER H 67 LEU H 75 1 9 HELIX 27 AC9 LYS H 78 LYS H 87 1 10 HELIX 28 AD1 THR H 116 GLU H 126 1 11 HELIX 29 AD2 THR D 7 TYR D 12 1 6 HELIX 30 AD3 LYS D 21 SER D 26 1 6 HELIX 31 AD4 THR D 33 ARG D 44 1 12 HELIX 32 AD5 ARG D 46 ASN D 53 1 8 HELIX 33 AD6 SER D 67 ASN D 76 1 10 HELIX 34 AD7 LYS D 78 ASP D 92 1 15 HELIX 35 AD8 THR D 116 GLU D 126 1 11 HELIX 36 AD9 THR E 7 GLU E 14 1 8 HELIX 37 AE1 VAL E 22 THR E 25 5 4 HELIX 38 AE2 SER E 26 LYS E 30 5 5 HELIX 39 AE3 THR E 33 ASN E 53 1 21 HELIX 40 AE4 SER E 67 LEU E 75 1 9 HELIX 41 AE5 LYS E 78 GLY E 93 1 16 HELIX 42 AE6 THR E 116 ASN E 128 1 13 HELIX 43 AE7 THR F 7 TYR F 12 1 6 HELIX 44 AE8 THR F 33 ARG F 46 1 14 HELIX 45 AE9 ARG F 46 ASN F 53 1 8 HELIX 46 AF1 SER F 67 ASN F 76 1 10 HELIX 47 AF2 LYS F 78 ASP F 92 1 15 HELIX 48 AF3 THR F 116 GLU F 127 1 12 HELIX 49 AF4 THR G 7 TYR G 12 1 6 HELIX 50 AF5 VAL G 22 PHE G 24 5 3 HELIX 51 AF6 THR G 33 ASN G 53 1 21 HELIX 52 AF7 GLU G 69 LEU G 75 1 7 HELIX 53 AF8 GLU G 80 LEU G 89 1 10 HELIX 54 AF9 THR G 116 GLU G 127 1 12 SHEET 1 AA1 2 LEU A 95 LYS A 98 0 SHEET 2 AA1 2 ILE A 107 LEU A 110 -1 O TYR A 109 N ILE A 96 SHEET 1 AA2 2 LEU B 95 LYS B 98 0 SHEET 2 AA2 2 ILE B 107 LEU B 110 -1 O ILE B 107 N LYS B 98 SHEET 1 AA3 2 PHE C 16 PRO C 20 0 SHEET 2 AA3 2 PHE H 16 PRO H 20 -1 O TYR H 17 N ILE C 19 SHEET 1 AA4 3 TYR C 63 VAL C 65 0 SHEET 2 AA4 3 ILE C 107 LEU C 110 -1 O LEU C 108 N PHE C 64 SHEET 3 AA4 3 LEU C 95 GLN C 97 -1 N ILE C 96 O TYR C 109 SHEET 1 AA5 3 TYR H 63 PHE H 64 0 SHEET 2 AA5 3 ILE H 107 LEU H 110 -1 O LEU H 108 N PHE H 64 SHEET 3 AA5 3 LEU H 95 LYS H 98 -1 N ILE H 96 O TYR H 109 SHEET 1 AA6 2 PHE D 16 PRO D 20 0 SHEET 2 AA6 2 PHE E 16 PRO E 20 -1 O ILE E 19 N TYR D 17 SHEET 1 AA7 2 LEU D 95 LYS D 98 0 SHEET 2 AA7 2 ILE D 107 LEU D 110 -1 O TYR D 109 N ILE D 96 SHEET 1 AA8 3 PHE E 64 TYR E 66 0 SHEET 2 AA8 3 ASN E 106 LEU E 110 -1 O LEU E 108 N PHE E 64 SHEET 3 AA8 3 LEU E 95 LYS E 98 -1 N ILE E 96 O TYR E 109 SHEET 1 AA9 2 PHE F 16 PRO F 20 0 SHEET 2 AA9 2 PHE G 16 PRO G 20 -1 O TYR G 17 N ILE F 19 SHEET 1 AB1 3 TYR F 63 PHE F 64 0 SHEET 2 AB1 3 ILE F 107 LEU F 110 -1 O LEU F 108 N PHE F 64 SHEET 3 AB1 3 LEU F 95 LYS F 98 -1 N ILE F 96 O TYR F 109 CRYST1 59.200 77.500 100.700 80.80 75.50 71.90 P 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016892 -0.005521 -0.003892 0.00000 SCALE2 0.000000 0.013575 -0.001216 0.00000 SCALE3 0.000000 0.000000 0.010298 0.00000