HEADER SIGNALING PROTEIN 03-JUN-16 5KBX TITLE CO-CRYSTAL STRUCTURE OF THE SACCHAROMYCES CEREVISIAE HISTIDINE TITLE 2 PHOSPHOTRANSFER SIGNALING PROTEIN YPD1 AND THE RECEIVER DOMAIN OF ITS TITLE 3 DOWNSTREAM RESPONSE REGULATOR SSK1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHORELAY INTERMEDIATE PROTEIN YPD1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN YPD1,TYROSINE COMPND 5 PHOSPHATASE-DEPENDENT PROTEIN 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: OSMOLARITY TWO-COMPONENT SYSTEM PROTEIN SSK1; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 495-712; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: YPD1, YDL235C, D0790; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH5[ALPHA]; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 668369; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PUC; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 559292; SOURCE 15 STRAIN: ATCC 204508 / S288C; SOURCE 16 GENE: SSK1, YLR006C; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 EXPRESSION_SYSTEM_CELL: STAR; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PCYB2 VECTOR IMPACT SYSTEM KEYWDS TWO-COMPONENT SIGNALING, PHOSPHORELAY, YPD1, SSK1, RESPONSE KEYWDS 2 REGULATOR, HISTIDINE PHOSPHOTRANSFER PROTEIN, SACCHAROMYCES KEYWDS 3 CEREVISIAE, CO-CRYSTAL, PHOSPHOTRANSFER, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.K.MENON,A.H.WEST REVDAT 4 27-NOV-19 5KBX 1 REMARK REVDAT 3 23-OCT-19 5KBX 1 COMPND SOURCE REMARK HELIX REVDAT 3 2 1 SHEET LINK SITE CRYST1 REVDAT 3 3 1 ATOM REVDAT 2 27-SEP-17 5KBX 1 REMARK REVDAT 1 07-JUN-17 5KBX 0 JRNL AUTH S.K.MENON,K.M.BRANSCUM,C.A.FOSTER,A.H.WEST JRNL TITL INSIGHTS REVEALED BY THE CO-CRYSTAL STRUCTURE OF THE JRNL TITL 2 SACCHAROMYCES CEREVISIAE HISTIDINE PHOSPHOTRANSFER SIGNALING JRNL TITL 3 PROTEIN YPD1 AND THE RECEIVER DOMAIN OF ITS DOWNSTREAM JRNL TITL 4 RESPONSE REGULATOR SSK1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH X.ZHAO,D.M.COPELAND,A.S.SOARES,A.H.WEST REMARK 1 TITL CRYSTAL STRUCTURE OF A COMPLEX BETWEEN THE PHOSPHORELAY REMARK 1 TITL 2 PROTEIN YPD1 AND THE RESPONSE REGULATOR DOMAIN OF SLN1 BOUND REMARK 1 TITL 3 TO A PHOSPHORYL ANALOG. REMARK 1 REF J. MOL. BIOL. V. 375 1141 2008 REMARK 1 REFN ESSN 1089-8638 REMARK 1 PMID 18076904 REMARK 1 REFERENCE 2 REMARK 1 AUTH L.CHOOBACK,A.H.WEST REMARK 1 TITL CO-CRYSTALLIZATION OF THE YEAST PHOSPHORELAY PROTEIN YPD1 REMARK 1 TITL 2 WITH THE SLN1 RESPONSE-REGULATOR DOMAIN AND PRELIMINARY REMARK 1 TITL 3 X-RAY DIFFRACTION ANALYSIS. REMARK 1 REF ACTA CRYSTALLOGR. D BIOL. V. 59 927 2003 REMARK 1 REF 2 CRYSTALLOGR. REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 12777814 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.3 REMARK 3 NUMBER OF REFLECTIONS : 10608 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1061 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.2700 - 5.5900 1.00 1467 164 0.2350 0.2711 REMARK 3 2 5.5900 - 4.4400 1.00 1377 153 0.1970 0.2223 REMARK 3 3 4.4400 - 3.8800 1.00 1352 151 0.1950 0.2294 REMARK 3 4 3.8800 - 3.5200 0.97 1292 142 0.2264 0.3097 REMARK 3 5 3.5200 - 3.2700 0.98 1283 145 0.2530 0.2954 REMARK 3 6 3.2700 - 3.0800 0.97 1288 142 0.2689 0.3831 REMARK 3 7 3.0800 - 2.9200 0.67 886 98 0.2679 0.3267 REMARK 3 8 2.9200 - 2.8000 0.46 602 66 0.2667 0.3688 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.365 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.583 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.001 2436 REMARK 3 ANGLE : 0.350 3276 REMARK 3 CHIRALITY : 0.036 372 REMARK 3 PLANARITY : 0.002 413 REMARK 3 DIHEDRAL : 7.984 1479 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1572 61.0852 61.6206 REMARK 3 T TENSOR REMARK 3 T11: 0.3272 T22: 0.4360 REMARK 3 T33: 0.2273 T12: -0.1050 REMARK 3 T13: -0.0085 T23: -0.0614 REMARK 3 L TENSOR REMARK 3 L11: 4.8629 L22: 4.6919 REMARK 3 L33: 5.4392 L12: -0.6504 REMARK 3 L13: 2.2233 L23: 0.2926 REMARK 3 S TENSOR REMARK 3 S11: 0.2627 S12: 0.0414 S13: -0.3837 REMARK 3 S21: -0.1001 S22: -0.3320 S23: 0.6289 REMARK 3 S31: 0.7258 S32: -0.8239 S33: -0.0331 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 499 THROUGH 579 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4437 83.1017 48.1206 REMARK 3 T TENSOR REMARK 3 T11: 0.2613 T22: 0.2752 REMARK 3 T33: 0.2296 T12: 0.1302 REMARK 3 T13: 0.0512 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 3.7283 L22: 3.4136 REMARK 3 L33: 5.1044 L12: 2.5509 REMARK 3 L13: -0.6344 L23: -0.7484 REMARK 3 S TENSOR REMARK 3 S11: 0.2283 S12: -0.0267 S13: 0.5422 REMARK 3 S21: 0.2057 S22: -0.0155 S23: 0.5228 REMARK 3 S31: -0.4307 S32: -0.6422 S33: -0.1123 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 596 THROUGH 606 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.4321 93.6078 36.0873 REMARK 3 T TENSOR REMARK 3 T11: 0.5942 T22: 0.5671 REMARK 3 T33: 0.4045 T12: 0.0105 REMARK 3 T13: -0.2953 T23: 0.1512 REMARK 3 L TENSOR REMARK 3 L11: 4.6704 L22: 0.2663 REMARK 3 L33: 9.2758 L12: 1.1094 REMARK 3 L13: -3.0246 L23: -0.4976 REMARK 3 S TENSOR REMARK 3 S11: -0.0175 S12: 0.5149 S13: 1.4538 REMARK 3 S21: -0.1408 S22: -0.1144 S23: 0.9675 REMARK 3 S31: -2.1205 S32: 0.0436 S33: 0.3148 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 607 THROUGH 625 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.6480 70.0988 37.6035 REMARK 3 T TENSOR REMARK 3 T11: 0.6506 T22: 0.7722 REMARK 3 T33: 0.5130 T12: -0.0144 REMARK 3 T13: -0.1346 T23: -0.2021 REMARK 3 L TENSOR REMARK 3 L11: 4.9658 L22: 7.2969 REMARK 3 L33: 7.6667 L12: 0.4914 REMARK 3 L13: -2.1253 L23: -7.2088 REMARK 3 S TENSOR REMARK 3 S11: -0.1408 S12: 1.5444 S13: -1.2949 REMARK 3 S21: -1.8758 S22: 0.6382 S23: 1.1687 REMARK 3 S31: 1.8957 S32: -1.5356 S33: -0.3291 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 626 THROUGH 659 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.0584 75.1609 41.9843 REMARK 3 T TENSOR REMARK 3 T11: 0.3947 T22: 0.3238 REMARK 3 T33: 0.1673 T12: 0.1562 REMARK 3 T13: -0.0374 T23: -0.0890 REMARK 3 L TENSOR REMARK 3 L11: 4.1840 L22: 2.4863 REMARK 3 L33: 1.7096 L12: 2.5357 REMARK 3 L13: -1.0094 L23: -1.4655 REMARK 3 S TENSOR REMARK 3 S11: -0.4095 S12: 0.3830 S13: -0.5448 REMARK 3 S21: -0.7066 S22: 0.3790 S23: -0.3403 REMARK 3 S31: 0.8518 S32: 0.2831 S33: 0.1020 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 ELLIPSOIDAL TRUNCATION WAS APPLIED TO THE DATA/ REMARK 3 OVERALL D_MIN = 2.8 REMARK 3 D_MIN ALONG A*= 3.1 REMARK 3 D_MIN ALONG B*= 3.1 REMARK 3 D_MIN ALONG C*= 2.8 REMARK 4 REMARK 4 5KBX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000221664. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97910, 0.97930, 0.9116 REMARK 200 MONOCHROMATOR : SI(111) SIDE SCATTERING BENT REMARK 200 CUBE-ROOT I-BEAM SINGLE CRYSTAL; REMARK 200 ASYMMETRIC CUT 4.965 DEGS REMARK 200 OPTICS : RH COATED FLAT REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 708 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 708 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10695 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.798 REMARK 200 RESOLUTION RANGE LOW (A) : 33.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 44.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.16800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 0.1 M CAPS/NAOH REMARK 280 PH 10.5, 1.2 M NAH2PO4/0.8 M K2HPO4, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.19450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.84800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.84800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 132.29175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.84800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.84800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.09725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.84800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.84800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 132.29175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.84800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.84800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.09725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 88.19450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 118 REMARK 465 GLU A 119 REMARK 465 ASP A 120 REMARK 465 ASP A 121 REMARK 465 GLU A 122 REMARK 465 GLU A 123 REMARK 465 ILE A 124 REMARK 465 LYS A 125 REMARK 465 ILE A 126 REMARK 465 GLN A 127 REMARK 465 VAL A 128 REMARK 465 ASP A 129 REMARK 465 ASP A 130 REMARK 465 THR B 495 REMARK 465 THR B 496 REMARK 465 SER B 497 REMARK 465 GLU B 498 REMARK 465 ILE B 580 REMARK 465 GLN B 581 REMARK 465 LYS B 582 REMARK 465 SER B 583 REMARK 465 LEU B 584 REMARK 465 ASN B 585 REMARK 465 ASN B 586 REMARK 465 SER B 587 REMARK 465 HIS B 588 REMARK 465 SER B 589 REMARK 465 ASN B 590 REMARK 465 LEU B 591 REMARK 465 GLU B 592 REMARK 465 LYS B 593 REMARK 465 GLY B 594 REMARK 465 THR B 595 REMARK 465 GLN B 660 REMARK 465 GLY B 661 REMARK 465 GLU B 662 REMARK 465 SER B 663 REMARK 465 ARG B 664 REMARK 465 MSE B 665 REMARK 465 THR B 666 REMARK 465 ASP B 667 REMARK 465 SER B 668 REMARK 465 VAL B 669 REMARK 465 LEU B 670 REMARK 465 VAL B 671 REMARK 465 LYS B 672 REMARK 465 SER B 673 REMARK 465 PRO B 674 REMARK 465 GLN B 675 REMARK 465 LYS B 676 REMARK 465 PRO B 677 REMARK 465 ILE B 678 REMARK 465 ALA B 679 REMARK 465 PRO B 680 REMARK 465 SER B 681 REMARK 465 ASN B 682 REMARK 465 PRO B 683 REMARK 465 HIS B 684 REMARK 465 SER B 685 REMARK 465 PHE B 686 REMARK 465 LYS B 687 REMARK 465 GLN B 688 REMARK 465 ALA B 689 REMARK 465 THR B 690 REMARK 465 SER B 691 REMARK 465 MSE B 692 REMARK 465 THR B 693 REMARK 465 PRO B 694 REMARK 465 THR B 695 REMARK 465 HIS B 696 REMARK 465 SER B 697 REMARK 465 PRO B 698 REMARK 465 VAL B 699 REMARK 465 ARG B 700 REMARK 465 LYS B 701 REMARK 465 ASN B 702 REMARK 465 SER B 703 REMARK 465 ASN B 704 REMARK 465 LEU B 705 REMARK 465 SER B 706 REMARK 465 PRO B 707 REMARK 465 THR B 708 REMARK 465 GLN B 709 REMARK 465 ILE B 710 REMARK 465 GLU B 711 REMARK 465 LEU B 712 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 803 DBREF 5KBX A 1 167 UNP Q07688 YPD1_YEAST 1 167 DBREF 5KBX B 495 712 UNP Q07084 SSK1_YEAST 495 712 SEQADV 5KBX ALA B 638 UNP Q07084 TRP 638 ENGINEERED MUTATION SEQRES 1 A 167 MET SER THR ILE PRO SER GLU ILE ILE ASN TRP THR ILE SEQRES 2 A 167 LEU ASN GLU ILE ILE SER MET ASP ASP ASP ASP SER ASP SEQRES 3 A 167 PHE SER LYS GLY LEU ILE ILE GLN PHE ILE ASP GLN ALA SEQRES 4 A 167 GLN THR THR PHE ALA GLN MET GLN ARG GLN LEU ASP GLY SEQRES 5 A 167 GLU LYS ASN LEU THR GLU LEU ASP ASN LEU GLY HIS PHE SEQRES 6 A 167 LEU LYS GLY SER SER ALA ALA LEU GLY LEU GLN ARG ILE SEQRES 7 A 167 ALA TRP VAL CYS GLU ARG ILE GLN ASN LEU GLY ARG LYS SEQRES 8 A 167 MET GLU HIS PHE PHE PRO ASN LYS THR GLU LEU VAL ASN SEQRES 9 A 167 THR LEU SER ASP LYS SER ILE ILE ASN GLY ILE ASN ILE SEQRES 10 A 167 ASP GLU ASP ASP GLU GLU ILE LYS ILE GLN VAL ASP ASP SEQRES 11 A 167 LYS ASP GLU ASN SER ILE TYR LEU ILE LEU ILE ALA LYS SEQRES 12 A 167 ALA LEU ASN GLN SER ARG LEU GLU PHE LYS LEU ALA ARG SEQRES 13 A 167 ILE GLU LEU SER LYS TYR TYR ASN THR ASN LEU SEQRES 1 B 218 THR THR SER GLU LYS VAL PHE PRO LYS ILE ASN VAL LEU SEQRES 2 B 218 ILE VAL GLU ASP ASN VAL ILE ASN GLN ALA ILE LEU GLY SEQRES 3 B 218 SER PHE LEU ARG LYS HIS LYS ILE SER TYR LYS LEU ALA SEQRES 4 B 218 LYS ASN GLY GLN GLU ALA VAL ASN ILE TRP LYS GLU GLY SEQRES 5 B 218 GLY LEU HIS LEU ILE PHE MSE ASP LEU GLN LEU PRO VAL SEQRES 6 B 218 LEU SER GLY ILE GLU ALA ALA LYS GLN ILE ARG ASP PHE SEQRES 7 B 218 GLU LYS GLN ASN GLY ILE GLY ILE GLN LYS SER LEU ASN SEQRES 8 B 218 ASN SER HIS SER ASN LEU GLU LYS GLY THR SER LYS ARG SEQRES 9 B 218 PHE SER GLN ALA PRO VAL ILE ILE VAL ALA LEU THR ALA SEQRES 10 B 218 SER ASN SER GLN MSE ASP LYS ARG LYS ALA LEU LEU SER SEQRES 11 B 218 GLY CYS ASN ASP TYR LEU THR LYS PRO VAL ASN LEU HIS SEQRES 12 B 218 ALA LEU SER LYS LYS ILE THR GLU TRP GLY CYS MSE GLN SEQRES 13 B 218 ALA LEU ILE ASP PHE ASP SER TRP LYS GLN GLY GLU SER SEQRES 14 B 218 ARG MSE THR ASP SER VAL LEU VAL LYS SER PRO GLN LYS SEQRES 15 B 218 PRO ILE ALA PRO SER ASN PRO HIS SER PHE LYS GLN ALA SEQRES 16 B 218 THR SER MSE THR PRO THR HIS SER PRO VAL ARG LYS ASN SEQRES 17 B 218 SER ASN LEU SER PRO THR GLN ILE GLU LEU MODRES 5KBX MSE B 553 MET MODIFIED RESIDUE MODRES 5KBX MSE B 616 MET MODIFIED RESIDUE MODRES 5KBX MSE B 649 MET MODIFIED RESIDUE HET MSE B 553 8 HET MSE B 616 8 HET MSE B 649 8 HET GOL A 201 6 HET PO4 A 202 5 HET GOL B 801 6 HET GOL B 802 6 HET PO4 B 803 5 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MSE 3(C5 H11 N O2 SE) FORMUL 3 GOL 3(C3 H8 O3) FORMUL 4 PO4 2(O4 P 3-) FORMUL 8 HOH *30(H2 O) HELIX 1 AA1 ASN A 10 SER A 19 1 10 HELIX 2 AA2 ASP A 26 ASP A 51 1 26 HELIX 3 AA3 ASN A 55 LEU A 73 1 19 HELIX 4 AA4 LEU A 75 ARG A 90 1 16 HELIX 5 AA5 ASN A 98 VAL A 103 1 6 HELIX 6 AA6 ASN A 104 LEU A 106 5 3 HELIX 7 AA7 ASN A 134 ASN A 164 1 31 HELIX 8 AA8 ASN B 512 HIS B 526 1 15 HELIX 9 AA9 ASN B 535 GLU B 545 1 11 HELIX 10 AB1 SER B 561 ASN B 576 1 16 HELIX 11 AB2 SER B 614 LEU B 623 1 10 HELIX 12 AB3 ASN B 635 LEU B 652 1 18 SHEET 1 AA1 5 TYR B 530 ALA B 533 0 SHEET 2 AA1 5 VAL B 506 VAL B 509 1 N VAL B 506 O LYS B 531 SHEET 3 AA1 5 LEU B 550 ASP B 554 1 O PHE B 552 N LEU B 507 SHEET 4 AA1 5 ILE B 605 THR B 610 1 O VAL B 607 N ILE B 551 SHEET 5 AA1 5 ASP B 628 THR B 631 1 O LEU B 630 N ALA B 608 LINK C PHE B 552 N MSE B 553 1555 1555 1.33 LINK C MSE B 553 N ASP B 554 1555 1555 1.33 LINK C GLN B 615 N MSE B 616 1555 1555 1.33 LINK C MSE B 616 N ASP B 617 1555 1555 1.34 LINK C CYS B 648 N MSE B 649 1555 1555 1.33 LINK C MSE B 649 N GLN B 650 1555 1555 1.33 CISPEP 1 LYS B 632 PRO B 633 0 0.08 SITE 1 AC1 1 TRP A 11 SITE 1 AC2 5 HIS A 64 LYS A 67 GLN A 86 GLN B 556 SITE 2 AC2 5 ALA B 611 SITE 1 AC3 1 PO4 B 803 SITE 1 AC4 2 HIS B 637 SER B 640 SITE 1 AC5 4 LYS B 641 LYS B 642 GLU B 645 GOL B 801 CRYST1 71.696 71.696 176.389 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013948 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013948 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005669 0.00000