HEADER SIGNALING PROTEIN 05-JUN-16 5KC6 TITLE CRYSTAL STRUCTURE OF CBLN1 (VAL55-GLY58 DELETION MUTANT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CEREBELLIN-1; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: PRECEREBELLIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CBLN1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293S; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS CEREBELLIN, NEUROTRANSMISSION, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.ELEGHEERT,J.E.CLAY,A.R.ARICESCU REVDAT 5 10-JAN-24 5KC6 1 HETSYN REVDAT 4 29-JUL-20 5KC6 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 18-DEC-19 5KC6 1 REMARK REVDAT 2 03-AUG-16 5KC6 1 TITLE REVDAT 1 27-JUL-16 5KC6 0 JRNL AUTH J.ELEGHEERT,W.KAKEGAWA,J.E.CLAY,N.F.SHANKS,E.BEHIELS, JRNL AUTH 2 K.MATSUDA,K.KOHDA,E.MIURA,M.ROSSMANN,N.MITAKIDIS, JRNL AUTH 3 J.MOTOHASHI,V.T.CHANG,C.SIEBOLD,I.H.GREGER,T.NAKAGAWA, JRNL AUTH 4 M.YUZAKI,A.R.ARICESCU JRNL TITL STRUCTURAL BASIS FOR INTEGRATION OF GLUD RECEPTORS WITHIN JRNL TITL 2 SYNAPTIC ORGANIZER COMPLEXES. JRNL REF SCIENCE V. 353 295 2016 JRNL REFN ESSN 1095-9203 JRNL PMID 27418511 JRNL DOI 10.1126/SCIENCE.AAE0104 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1772 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 73.2 REMARK 3 NUMBER OF REFLECTIONS : 14561 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 708 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 68.7908 - 4.7884 0.99 3925 192 0.1798 0.2187 REMARK 3 2 4.7884 - 3.8008 0.99 3760 185 0.1631 0.2036 REMARK 3 3 3.8008 - 3.3203 0.83 3082 176 0.2190 0.2539 REMARK 3 4 3.3203 - 3.0167 0.55 2075 107 0.2422 0.2797 REMARK 3 5 3.0167 - 2.8005 0.27 1011 48 0.2387 0.2220 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3451 REMARK 3 ANGLE : 0.722 4666 REMARK 3 CHIRALITY : 0.031 507 REMARK 3 PLANARITY : 0.002 600 REMARK 3 DIHEDRAL : 13.202 1244 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 59:195) REMARK 3 ORIGIN FOR THE GROUP (A): 70.0901 34.2115 16.3107 REMARK 3 T TENSOR REMARK 3 T11: 0.2536 T22: 0.4491 REMARK 3 T33: 0.3266 T12: -0.0557 REMARK 3 T13: 0.0416 T23: 0.0736 REMARK 3 L TENSOR REMARK 3 L11: 2.8648 L22: 2.2085 REMARK 3 L33: 2.9376 L12: -0.3874 REMARK 3 L13: 0.0827 L23: -0.0422 REMARK 3 S TENSOR REMARK 3 S11: -0.1598 S12: -0.7242 S13: -0.4212 REMARK 3 S21: 0.0763 S22: 0.0742 S23: 0.2506 REMARK 3 S31: 0.0351 S32: -0.4344 S33: 0.0850 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 59:202) REMARK 3 ORIGIN FOR THE GROUP (A): 92.6351 39.2103 11.1711 REMARK 3 T TENSOR REMARK 3 T11: 0.2607 T22: 0.2986 REMARK 3 T33: 0.1908 T12: 0.0545 REMARK 3 T13: -0.0295 T23: 0.0479 REMARK 3 L TENSOR REMARK 3 L11: 4.4245 L22: 2.5369 REMARK 3 L33: 3.1198 L12: 0.6674 REMARK 3 L13: -0.2355 L23: 0.5682 REMARK 3 S TENSOR REMARK 3 S11: -0.1842 S12: -0.4570 S13: -0.0292 REMARK 3 S21: -0.0835 S22: 0.1518 S23: -0.0626 REMARK 3 S31: -0.1888 S32: 0.1864 S33: 0.0343 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN C AND RESSEQ 59:194) REMARK 3 ORIGIN FOR THE GROUP (A): 76.9018 40.0466 -5.2777 REMARK 3 T TENSOR REMARK 3 T11: 0.2745 T22: 0.2920 REMARK 3 T33: 0.2424 T12: -0.0242 REMARK 3 T13: 0.0028 T23: -0.0550 REMARK 3 L TENSOR REMARK 3 L11: 3.5721 L22: 2.3326 REMARK 3 L33: 2.5196 L12: -1.0460 REMARK 3 L13: 0.3216 L23: -0.0325 REMARK 3 S TENSOR REMARK 3 S11: -0.0416 S12: 0.4311 S13: 0.0950 REMARK 3 S21: -0.1173 S22: 0.1785 S23: -0.1803 REMARK 3 S31: 0.0648 S32: -0.1133 S33: -0.1028 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KC6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000221708. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97630 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14603 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 85.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 73.4 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 19.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.42500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5KC5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (V/V) GLYCEROL, 8.5% (V/V) REMARK 280 ISOPROPANOL, 17% (W/V) POLYETHYLENE GLYCOL 4000, 0.085 M REMARK 280 NA.HEPES PH 7.5 AND 0.02 M SODIUM BROMIDE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.21500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.21500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.79000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 85.22500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.79000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 85.22500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.21500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.79000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 85.22500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.21500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.79000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 85.22500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 CYCLIC POINT SYMMETRY (SCHOENFLIES SYMBOL = C2). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 25 REMARK 465 THR A 26 REMARK 465 GLY A 27 REMARK 465 GLU A 28 REMARK 465 THR A 29 REMARK 465 GLU A 30 REMARK 465 PRO A 31 REMARK 465 ILE A 32 REMARK 465 VAL A 33 REMARK 465 LEU A 34 REMARK 465 GLU A 35 REMARK 465 GLY A 36 REMARK 465 LYS A 37 REMARK 465 CYS A 38 REMARK 465 LEU A 39 REMARK 465 VAL A 40 REMARK 465 VAL A 41 REMARK 465 CYS A 42 REMARK 465 ASP A 43 REMARK 465 SER A 44 REMARK 465 ASN A 45 REMARK 465 PRO A 46 REMARK 465 THR A 47 REMARK 465 SER A 48 REMARK 465 ASP A 49 REMARK 465 PRO A 50 REMARK 465 THR A 51 REMARK 465 GLY A 52 REMARK 465 THR A 53 REMARK 465 ALA A 54 REMARK 465 LEU A 55 REMARK 465 GLY A 56 REMARK 465 ILE A 57 REMARK 465 SER A 58 REMARK 465 LYS A 196 REMARK 465 HIS A 197 REMARK 465 HIS A 198 REMARK 465 HIS A 199 REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 HIS A 202 REMARK 465 GLU B 25 REMARK 465 THR B 26 REMARK 465 GLY B 27 REMARK 465 GLU B 28 REMARK 465 THR B 29 REMARK 465 GLU B 30 REMARK 465 PRO B 31 REMARK 465 ILE B 32 REMARK 465 VAL B 33 REMARK 465 LEU B 34 REMARK 465 GLU B 35 REMARK 465 GLY B 36 REMARK 465 LYS B 37 REMARK 465 CYS B 38 REMARK 465 LEU B 39 REMARK 465 VAL B 40 REMARK 465 VAL B 41 REMARK 465 CYS B 42 REMARK 465 ASP B 43 REMARK 465 SER B 44 REMARK 465 ASN B 45 REMARK 465 PRO B 46 REMARK 465 THR B 47 REMARK 465 SER B 48 REMARK 465 ASP B 49 REMARK 465 PRO B 50 REMARK 465 THR B 51 REMARK 465 GLY B 52 REMARK 465 THR B 53 REMARK 465 ALA B 54 REMARK 465 LEU B 55 REMARK 465 GLY B 56 REMARK 465 ILE B 57 REMARK 465 SER B 58 REMARK 465 GLU C 25 REMARK 465 THR C 26 REMARK 465 GLY C 27 REMARK 465 GLU C 28 REMARK 465 THR C 29 REMARK 465 GLU C 30 REMARK 465 PRO C 31 REMARK 465 ILE C 32 REMARK 465 VAL C 33 REMARK 465 LEU C 34 REMARK 465 GLU C 35 REMARK 465 GLY C 36 REMARK 465 LYS C 37 REMARK 465 CYS C 38 REMARK 465 LEU C 39 REMARK 465 VAL C 40 REMARK 465 VAL C 41 REMARK 465 CYS C 42 REMARK 465 ASP C 43 REMARK 465 SER C 44 REMARK 465 ASN C 45 REMARK 465 PRO C 46 REMARK 465 THR C 47 REMARK 465 SER C 48 REMARK 465 ASP C 49 REMARK 465 PRO C 50 REMARK 465 THR C 51 REMARK 465 GLY C 52 REMARK 465 THR C 53 REMARK 465 ALA C 54 REMARK 465 LEU C 55 REMARK 465 GLY C 56 REMARK 465 ILE C 57 REMARK 465 SER C 58 REMARK 465 THR C 195 REMARK 465 LYS C 196 REMARK 465 HIS C 197 REMARK 465 HIS C 198 REMARK 465 HIS C 199 REMARK 465 HIS C 200 REMARK 465 HIS C 201 REMARK 465 HIS C 202 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 120 O GLN A 125 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LYS B 163 NH2 ARG C 173 8555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 92 60.44 -160.09 REMARK 500 ASN B 92 60.24 -160.20 REMARK 500 ASN C 92 60.29 -159.37 REMARK 500 REMARK 500 REMARK: NULL DBREF 5KC6 A 28 193 UNP P23435 CBLN1_HUMAN 24 193 DBREF 5KC6 B 28 193 UNP P23435 CBLN1_HUMAN 24 193 DBREF 5KC6 C 28 193 UNP P23435 CBLN1_HUMAN 24 193 SEQADV 5KC6 GLU A 25 UNP P23435 EXPRESSION TAG SEQADV 5KC6 THR A 26 UNP P23435 EXPRESSION TAG SEQADV 5KC6 GLY A 27 UNP P23435 EXPRESSION TAG SEQADV 5KC6 A UNP P23435 VAL 55 DELETION SEQADV 5KC6 A UNP P23435 ARG 56 DELETION SEQADV 5KC6 A UNP P23435 SER 57 DELETION SEQADV 5KC6 A UNP P23435 GLY 58 DELETION SEQADV 5KC6 GLY A 194 UNP P23435 EXPRESSION TAG SEQADV 5KC6 THR A 195 UNP P23435 EXPRESSION TAG SEQADV 5KC6 LYS A 196 UNP P23435 EXPRESSION TAG SEQADV 5KC6 HIS A 197 UNP P23435 EXPRESSION TAG SEQADV 5KC6 HIS A 198 UNP P23435 EXPRESSION TAG SEQADV 5KC6 HIS A 199 UNP P23435 EXPRESSION TAG SEQADV 5KC6 HIS A 200 UNP P23435 EXPRESSION TAG SEQADV 5KC6 HIS A 201 UNP P23435 EXPRESSION TAG SEQADV 5KC6 HIS A 202 UNP P23435 EXPRESSION TAG SEQADV 5KC6 GLU B 25 UNP P23435 EXPRESSION TAG SEQADV 5KC6 THR B 26 UNP P23435 EXPRESSION TAG SEQADV 5KC6 GLY B 27 UNP P23435 EXPRESSION TAG SEQADV 5KC6 B UNP P23435 VAL 55 DELETION SEQADV 5KC6 B UNP P23435 ARG 56 DELETION SEQADV 5KC6 B UNP P23435 SER 57 DELETION SEQADV 5KC6 B UNP P23435 GLY 58 DELETION SEQADV 5KC6 GLY B 194 UNP P23435 EXPRESSION TAG SEQADV 5KC6 THR B 195 UNP P23435 EXPRESSION TAG SEQADV 5KC6 LYS B 196 UNP P23435 EXPRESSION TAG SEQADV 5KC6 HIS B 197 UNP P23435 EXPRESSION TAG SEQADV 5KC6 HIS B 198 UNP P23435 EXPRESSION TAG SEQADV 5KC6 HIS B 199 UNP P23435 EXPRESSION TAG SEQADV 5KC6 HIS B 200 UNP P23435 EXPRESSION TAG SEQADV 5KC6 HIS B 201 UNP P23435 EXPRESSION TAG SEQADV 5KC6 HIS B 202 UNP P23435 EXPRESSION TAG SEQADV 5KC6 GLU C 25 UNP P23435 EXPRESSION TAG SEQADV 5KC6 THR C 26 UNP P23435 EXPRESSION TAG SEQADV 5KC6 GLY C 27 UNP P23435 EXPRESSION TAG SEQADV 5KC6 C UNP P23435 VAL 55 DELETION SEQADV 5KC6 C UNP P23435 ARG 56 DELETION SEQADV 5KC6 C UNP P23435 SER 57 DELETION SEQADV 5KC6 C UNP P23435 GLY 58 DELETION SEQADV 5KC6 GLY C 194 UNP P23435 EXPRESSION TAG SEQADV 5KC6 THR C 195 UNP P23435 EXPRESSION TAG SEQADV 5KC6 LYS C 196 UNP P23435 EXPRESSION TAG SEQADV 5KC6 HIS C 197 UNP P23435 EXPRESSION TAG SEQADV 5KC6 HIS C 198 UNP P23435 EXPRESSION TAG SEQADV 5KC6 HIS C 199 UNP P23435 EXPRESSION TAG SEQADV 5KC6 HIS C 200 UNP P23435 EXPRESSION TAG SEQADV 5KC6 HIS C 201 UNP P23435 EXPRESSION TAG SEQADV 5KC6 HIS C 202 UNP P23435 EXPRESSION TAG SEQRES 1 A 178 GLU THR GLY GLU THR GLU PRO ILE VAL LEU GLU GLY LYS SEQRES 2 A 178 CYS LEU VAL VAL CYS ASP SER ASN PRO THR SER ASP PRO SEQRES 3 A 178 THR GLY THR ALA LEU GLY ILE SER SER ALA LYS VAL ALA SEQRES 4 A 178 PHE SER ALA ILE ARG SER THR ASN HIS GLU PRO SER GLU SEQRES 5 A 178 MET SER ASN ARG THR MET ILE ILE TYR PHE ASP GLN VAL SEQRES 6 A 178 LEU VAL ASN ILE GLY ASN ASN PHE ASP SER GLU ARG SER SEQRES 7 A 178 THR PHE ILE ALA PRO ARG LYS GLY ILE TYR SER PHE ASN SEQRES 8 A 178 PHE HIS VAL VAL LYS VAL TYR ASN ARG GLN THR ILE GLN SEQRES 9 A 178 VAL SER LEU MET LEU ASN GLY TRP PRO VAL ILE SER ALA SEQRES 10 A 178 PHE ALA GLY ASP GLN ASP VAL THR ARG GLU ALA ALA SER SEQRES 11 A 178 ASN GLY VAL LEU ILE GLN MET GLU LYS GLY ASP ARG ALA SEQRES 12 A 178 TYR LEU LYS LEU GLU ARG GLY ASN LEU MET GLY GLY TRP SEQRES 13 A 178 LYS TYR SER THR PHE SER GLY PHE LEU VAL PHE PRO LEU SEQRES 14 A 178 GLY THR LYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 178 GLU THR GLY GLU THR GLU PRO ILE VAL LEU GLU GLY LYS SEQRES 2 B 178 CYS LEU VAL VAL CYS ASP SER ASN PRO THR SER ASP PRO SEQRES 3 B 178 THR GLY THR ALA LEU GLY ILE SER SER ALA LYS VAL ALA SEQRES 4 B 178 PHE SER ALA ILE ARG SER THR ASN HIS GLU PRO SER GLU SEQRES 5 B 178 MET SER ASN ARG THR MET ILE ILE TYR PHE ASP GLN VAL SEQRES 6 B 178 LEU VAL ASN ILE GLY ASN ASN PHE ASP SER GLU ARG SER SEQRES 7 B 178 THR PHE ILE ALA PRO ARG LYS GLY ILE TYR SER PHE ASN SEQRES 8 B 178 PHE HIS VAL VAL LYS VAL TYR ASN ARG GLN THR ILE GLN SEQRES 9 B 178 VAL SER LEU MET LEU ASN GLY TRP PRO VAL ILE SER ALA SEQRES 10 B 178 PHE ALA GLY ASP GLN ASP VAL THR ARG GLU ALA ALA SER SEQRES 11 B 178 ASN GLY VAL LEU ILE GLN MET GLU LYS GLY ASP ARG ALA SEQRES 12 B 178 TYR LEU LYS LEU GLU ARG GLY ASN LEU MET GLY GLY TRP SEQRES 13 B 178 LYS TYR SER THR PHE SER GLY PHE LEU VAL PHE PRO LEU SEQRES 14 B 178 GLY THR LYS HIS HIS HIS HIS HIS HIS SEQRES 1 C 178 GLU THR GLY GLU THR GLU PRO ILE VAL LEU GLU GLY LYS SEQRES 2 C 178 CYS LEU VAL VAL CYS ASP SER ASN PRO THR SER ASP PRO SEQRES 3 C 178 THR GLY THR ALA LEU GLY ILE SER SER ALA LYS VAL ALA SEQRES 4 C 178 PHE SER ALA ILE ARG SER THR ASN HIS GLU PRO SER GLU SEQRES 5 C 178 MET SER ASN ARG THR MET ILE ILE TYR PHE ASP GLN VAL SEQRES 6 C 178 LEU VAL ASN ILE GLY ASN ASN PHE ASP SER GLU ARG SER SEQRES 7 C 178 THR PHE ILE ALA PRO ARG LYS GLY ILE TYR SER PHE ASN SEQRES 8 C 178 PHE HIS VAL VAL LYS VAL TYR ASN ARG GLN THR ILE GLN SEQRES 9 C 178 VAL SER LEU MET LEU ASN GLY TRP PRO VAL ILE SER ALA SEQRES 10 C 178 PHE ALA GLY ASP GLN ASP VAL THR ARG GLU ALA ALA SER SEQRES 11 C 178 ASN GLY VAL LEU ILE GLN MET GLU LYS GLY ASP ARG ALA SEQRES 12 C 178 TYR LEU LYS LEU GLU ARG GLY ASN LEU MET GLY GLY TRP SEQRES 13 C 178 LYS TYR SER THR PHE SER GLY PHE LEU VAL PHE PRO LEU SEQRES 14 C 178 GLY THR LYS HIS HIS HIS HIS HIS HIS HET NAG A 301 14 HET NAG B 301 14 HET NAG C 301 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 3(C8 H15 N O6) HELIX 1 AA1 SER A 75 MET A 82 1 8 HELIX 2 AA2 SER B 75 MET B 82 1 8 HELIX 3 AA3 SER C 75 MET C 82 1 8 SHEET 1 AA1 5 GLN A 88 ILE A 93 0 SHEET 2 AA1 5 ALA A 63 ILE A 67 -1 N ILE A 67 O GLN A 88 SHEET 3 AA1 5 THR A 184 PRO A 192 -1 O GLY A 187 N PHE A 64 SHEET 4 AA1 5 GLY A 110 LYS A 120 -1 N HIS A 117 O THR A 184 SHEET 5 AA1 5 GLU A 151 MET A 161 -1 O ILE A 159 N TYR A 112 SHEET 1 AA2 5 PHE A 97 ASP A 98 0 SHEET 2 AA2 5 THR A 103 ILE A 105 -1 O THR A 103 N ASP A 98 SHEET 3 AA2 5 ARG A 166 ARG A 173 -1 O ALA A 167 N PHE A 104 SHEET 4 AA2 5 ILE A 127 LEU A 133 -1 N MET A 132 O TYR A 168 SHEET 5 AA2 5 TRP A 136 ALA A 143 -1 O TRP A 136 N LEU A 133 SHEET 1 AA3 5 GLN B 88 ILE B 93 0 SHEET 2 AA3 5 ALA B 63 ILE B 67 -1 N ILE B 67 O GLN B 88 SHEET 3 AA3 5 THR B 184 PRO B 192 -1 O GLY B 187 N PHE B 64 SHEET 4 AA3 5 GLY B 110 LYS B 120 -1 N HIS B 117 O THR B 184 SHEET 5 AA3 5 GLU B 151 MET B 161 -1 O ILE B 159 N TYR B 112 SHEET 1 AA4 5 PHE B 97 ASP B 98 0 SHEET 2 AA4 5 THR B 103 ILE B 105 -1 O THR B 103 N ASP B 98 SHEET 3 AA4 5 ARG B 166 ARG B 173 -1 O ALA B 167 N PHE B 104 SHEET 4 AA4 5 ILE B 127 LEU B 133 -1 N MET B 132 O TYR B 168 SHEET 5 AA4 5 TRP B 136 ALA B 143 -1 O TRP B 136 N LEU B 133 SHEET 1 AA5 5 GLN C 88 ILE C 93 0 SHEET 2 AA5 5 ALA C 63 ILE C 67 -1 N ILE C 67 O GLN C 88 SHEET 3 AA5 5 THR C 184 PRO C 192 -1 O PHE C 185 N ALA C 66 SHEET 4 AA5 5 GLY C 110 LYS C 120 -1 N SER C 113 O PHE C 188 SHEET 5 AA5 5 GLU C 151 MET C 161 -1 O ILE C 159 N TYR C 112 SHEET 1 AA6 5 PHE C 97 ASP C 98 0 SHEET 2 AA6 5 THR C 103 ILE C 105 -1 O THR C 103 N ASP C 98 SHEET 3 AA6 5 ARG C 166 ARG C 173 -1 O ALA C 167 N PHE C 104 SHEET 4 AA6 5 ILE C 127 LEU C 133 -1 N MET C 132 O TYR C 168 SHEET 5 AA6 5 TRP C 136 ALA C 143 -1 O TRP C 136 N LEU C 133 LINK ND2 ASN A 79 C1 NAG A 301 1555 1555 1.43 LINK ND2 ASN B 79 C1 NAG B 301 1555 1555 1.44 LINK ND2 ASN C 79 C1 NAG C 301 1555 1555 1.44 CRYST1 79.580 170.450 116.430 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012566 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005867 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008589 0.00000