HEADER SIGNALING PROTEIN 05-JUN-16 5KCA TITLE CRYSTAL STRUCTURE OF THE CBLN1 C1Q DOMAIN TRIMER IN COMPLEX WITH THE TITLE 2 AMINO-TERMINAL DOMAIN (ATD) OF IGLUR DELTA-2 (GLUD2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CEREBELLIN-1,CEREBELLIN-1,CEREBELLIN-1,GLUTAMATE RECEPTOR COMPND 3 IONOTROPIC, DELTA-2; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: PRECEREBELLIN,PRECEREBELLIN,PRECEREBELLIN,GLUR DELTA-2 COMPND 6 SUBUNIT; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CBLN1, GRID2, GLURD2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293S; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS CEREBELLIN, IONOTROPIC GLUTAMATE RECEPTOR (IGLUR), NEUROTRANSMISSION, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.ELEGHEERT,A.R.ARICESCU REVDAT 4 09-OCT-24 5KCA 1 REMARK REVDAT 3 10-JAN-24 5KCA 1 REMARK REVDAT 2 28-SEP-16 5KCA 1 REVDAT 1 27-JUL-16 5KCA 0 JRNL AUTH J.ELEGHEERT,W.KAKEGAWA,J.E.CLAY,N.F.SHANKS,E.BEHIELS, JRNL AUTH 2 K.MATSUDA,K.KOHDA,E.MIURA,M.ROSSMANN,N.MITAKIDIS, JRNL AUTH 3 J.MOTOHASHI,V.T.CHANG,C.SIEBOLD,I.H.GREGER,T.NAKAGAWA, JRNL AUTH 4 M.YUZAKI,A.R.ARICESCU JRNL TITL STRUCTURAL BASIS FOR INTEGRATION OF GLUD RECEPTORS WITHIN JRNL TITL 2 SYNAPTIC ORGANIZER COMPLEXES. JRNL REF SCIENCE V. 353 295 2016 JRNL REFN ESSN 1095-9203 JRNL PMID 27418511 JRNL DOI 10.1126/SCIENCE.AAE0104 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1772 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 30716 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1545 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0284 - 6.8875 0.97 2825 144 0.1900 0.2175 REMARK 3 2 6.8875 - 5.4697 0.99 2716 138 0.2008 0.2296 REMARK 3 3 5.4697 - 4.7791 1.00 2669 145 0.1633 0.1649 REMARK 3 4 4.7791 - 4.3425 1.00 2654 155 0.1567 0.1842 REMARK 3 5 4.3425 - 4.0315 1.00 2641 134 0.1812 0.2316 REMARK 3 6 4.0315 - 3.7939 1.00 2639 132 0.1964 0.2248 REMARK 3 7 3.7939 - 3.6040 1.00 2621 145 0.2168 0.2508 REMARK 3 8 3.6040 - 3.4471 1.00 2604 153 0.2442 0.2637 REMARK 3 9 3.4471 - 3.3145 1.00 2615 128 0.2708 0.2752 REMARK 3 10 3.3145 - 3.2001 1.00 2599 146 0.2962 0.3383 REMARK 3 11 3.2001 - 3.1001 1.00 2588 125 0.3282 0.3905 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6463 REMARK 3 ANGLE : 0.966 8744 REMARK 3 CHIRALITY : 0.039 972 REMARK 3 PLANARITY : 0.004 1136 REMARK 3 DIHEDRAL : 14.413 2332 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KCA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000221656. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96862 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30725 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 46.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.22400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 1.37700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5KC5, 5KC8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60% (V/V) TACSIMATE PH 7.0 (1.8305 M REMARK 280 MALONIC ACID, 0.25 M AMMONIUM CITRATE TRIBASIC, 0.12 M SUCCINIC REMARK 280 ACID, 0.3 M DL-MALIC ACID, 0.4 M SODIUM ACETATE TRIHYDRATE, 0.5 REMARK 280 M SODIUM FORMATE, AND 0.16 M AMMONIUM TARTRATE DIBASIC), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.04667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 184.09333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 138.07000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 230.11667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.02333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 92.04667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 184.09333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 230.11667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 138.07000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 46.02333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 CYCLIC POINT SYMMETRY (SCHOENFLIES SYMBOL = C2). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -46.02333 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 46.02333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 56 REMARK 465 THR A 57 REMARK 465 GLY A 58 REMARK 465 GLY A 194 REMARK 465 SER A 195 REMARK 465 GLU A 196 REMARK 465 LEU A 197 REMARK 465 GLY A 198 REMARK 465 SER A 199 REMARK 465 GLY A 200 REMARK 465 ALA A 338 REMARK 465 SER A 339 REMARK 465 GLY A 340 REMARK 465 SER A 362 REMARK 465 ASN A 363 REMARK 465 ARG A 364 REMARK 465 GLY A 478 REMARK 465 THR A 479 REMARK 465 GLY A 480 REMARK 465 GLY A 481 REMARK 465 SER A 482 REMARK 465 GLY A 483 REMARK 465 GLY A 484 REMARK 465 SER A 485 REMARK 465 GLY A 486 REMARK 465 GLY A 487 REMARK 465 SER A 488 REMARK 465 GLY A 489 REMARK 465 GLY A 490 REMARK 465 SER A 491 REMARK 465 GLY A 492 REMARK 465 GLY A 493 REMARK 465 SER A 494 REMARK 465 GLY A 495 REMARK 465 GLY A 496 REMARK 465 SER A 497 REMARK 465 GLY A 498 REMARK 465 GLY A 499 REMARK 465 SER A 500 REMARK 465 GLY A 501 REMARK 465 GLY A 502 REMARK 465 SER A 503 REMARK 465 GLY A 504 REMARK 465 GLY A 505 REMARK 465 SER A 506 REMARK 465 GLY A 507 REMARK 465 GLY A 508 REMARK 465 GLU A 893 REMARK 465 GLU A 894 REMARK 465 LEU A 895 REMARK 465 GLY A 896 REMARK 465 ARG A 897 REMARK 465 LEU A 915 REMARK 465 THR A 916 REMARK 465 ASP A 917 REMARK 465 LYS A 918 REMARK 465 LYS A 919 REMARK 465 LEU A 920 REMARK 465 GLU A 921 REMARK 465 ASN A 922 REMARK 465 ASN A 923 REMARK 465 MET A 924 REMARK 465 ARG A 925 REMARK 465 GLY A 926 REMARK 465 LYS A 927 REMARK 465 HIS A 928 REMARK 465 HIS A 929 REMARK 465 HIS A 930 REMARK 465 HIS A 931 REMARK 465 HIS A 932 REMARK 465 HIS A 933 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 146 CG CD OE1 NE2 REMARK 470 LYS A 404 CG CD CE NZ REMARK 470 ARG A 408 CG CD NE CZ NH1 NH2 REMARK 470 SER A 509 CB OG REMARK 470 LYS A 524 CG CD CE NZ REMARK 470 LYS A 548 CG CD CE NZ REMARK 470 SER A 622 OG REMARK 470 ASN A 623 CG OD1 ND2 REMARK 470 ARG A 624 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 692 CG CD CE NZ REMARK 470 ARG A 702 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 704 CG CD OE1 OE2 REMARK 470 ARG A 843 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 847 CG CD CE NZ REMARK 470 GLU A 875 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 92 53.03 -159.39 REMARK 500 GLN A 125 142.85 69.06 REMARK 500 GLN A 146 -18.62 -49.42 REMARK 500 TYR A 182 -3.17 86.37 REMARK 500 ASN A 234 52.70 -159.22 REMARK 500 TYR A 264 43.96 24.95 REMARK 500 ALA A 285 55.33 -140.03 REMARK 500 THR A 291 -80.60 -51.19 REMARK 500 LEU A 318 67.01 -108.65 REMARK 500 TYR A 324 -2.28 85.71 REMARK 500 ASN A 376 52.74 -158.70 REMARK 500 TYR A 406 87.86 -37.83 REMARK 500 GLN A 430 179.82 77.35 REMARK 500 LEU A 460 44.92 -108.20 REMARK 500 TYR A 466 -2.91 86.10 REMARK 500 ASP A 510 112.20 -169.64 REMARK 500 ASN A 623 -73.34 -80.94 REMARK 500 VAL A 719 76.80 -115.79 REMARK 500 ASN A 779 92.71 61.22 REMARK 500 CYS A 841 -80.91 -83.87 REMARK 500 TYR A 891 141.71 71.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 760 O REMARK 620 2 SER A 763 O 74.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1001 DBREF 5KCA A 58 193 UNP P23435 CBLN1_HUMAN 58 193 DBREF 5KCA A 199 335 UNP P23435 CBLN1_HUMAN 57 193 DBREF 5KCA A 341 477 UNP P23435 CBLN1_HUMAN 57 193 DBREF 5KCA A 510 926 UNP O43424 GRID2_HUMAN 24 440 SEQADV 5KCA GLU A 56 UNP P23435 EXPRESSION TAG SEQADV 5KCA THR A 57 UNP P23435 EXPRESSION TAG SEQADV 5KCA GLY A 194 UNP P23435 LINKER SEQADV 5KCA SER A 195 UNP P23435 LINKER SEQADV 5KCA GLU A 196 UNP P23435 LINKER SEQADV 5KCA LEU A 197 UNP P23435 LINKER SEQADV 5KCA GLY A 198 UNP P23435 LINKER SEQADV 5KCA GLY A 336 UNP P23435 LINKER SEQADV 5KCA SER A 337 UNP P23435 LINKER SEQADV 5KCA ALA A 338 UNP P23435 LINKER SEQADV 5KCA SER A 339 UNP P23435 LINKER SEQADV 5KCA GLY A 340 UNP P23435 LINKER SEQADV 5KCA GLY A 478 UNP P23435 LINKER SEQADV 5KCA THR A 479 UNP P23435 LINKER SEQADV 5KCA GLY A 480 UNP P23435 LINKER SEQADV 5KCA GLY A 481 UNP P23435 LINKER SEQADV 5KCA SER A 482 UNP P23435 LINKER SEQADV 5KCA GLY A 483 UNP P23435 LINKER SEQADV 5KCA GLY A 484 UNP P23435 LINKER SEQADV 5KCA SER A 485 UNP P23435 LINKER SEQADV 5KCA GLY A 486 UNP P23435 LINKER SEQADV 5KCA GLY A 487 UNP P23435 LINKER SEQADV 5KCA SER A 488 UNP P23435 LINKER SEQADV 5KCA GLY A 489 UNP P23435 LINKER SEQADV 5KCA GLY A 490 UNP P23435 LINKER SEQADV 5KCA SER A 491 UNP P23435 LINKER SEQADV 5KCA GLY A 492 UNP P23435 LINKER SEQADV 5KCA GLY A 493 UNP P23435 LINKER SEQADV 5KCA SER A 494 UNP P23435 LINKER SEQADV 5KCA GLY A 495 UNP P23435 LINKER SEQADV 5KCA GLY A 496 UNP P23435 LINKER SEQADV 5KCA SER A 497 UNP P23435 LINKER SEQADV 5KCA GLY A 498 UNP P23435 LINKER SEQADV 5KCA GLY A 499 UNP P23435 LINKER SEQADV 5KCA SER A 500 UNP P23435 LINKER SEQADV 5KCA GLY A 501 UNP P23435 LINKER SEQADV 5KCA GLY A 502 UNP P23435 LINKER SEQADV 5KCA SER A 503 UNP P23435 LINKER SEQADV 5KCA GLY A 504 UNP P23435 LINKER SEQADV 5KCA GLY A 505 UNP P23435 LINKER SEQADV 5KCA SER A 506 UNP P23435 LINKER SEQADV 5KCA GLY A 507 UNP P23435 LINKER SEQADV 5KCA GLY A 508 UNP P23435 LINKER SEQADV 5KCA SER A 509 UNP P23435 LINKER SEQADV 5KCA LYS A 927 UNP O43424 EXPRESSION TAG SEQADV 5KCA HIS A 928 UNP O43424 EXPRESSION TAG SEQADV 5KCA HIS A 929 UNP O43424 EXPRESSION TAG SEQADV 5KCA HIS A 930 UNP O43424 EXPRESSION TAG SEQADV 5KCA HIS A 931 UNP O43424 EXPRESSION TAG SEQADV 5KCA HIS A 932 UNP O43424 EXPRESSION TAG SEQADV 5KCA HIS A 933 UNP O43424 EXPRESSION TAG SEQRES 1 A 878 GLU THR GLY SER ALA LYS VAL ALA PHE SER ALA ILE ARG SEQRES 2 A 878 SER THR ASN HIS GLU PRO SER GLU MET SER ASN ARG THR SEQRES 3 A 878 MET ILE ILE TYR PHE ASP GLN VAL LEU VAL ASN ILE GLY SEQRES 4 A 878 ASN ASN PHE ASP SER GLU ARG SER THR PHE ILE ALA PRO SEQRES 5 A 878 ARG LYS GLY ILE TYR SER PHE ASN PHE HIS VAL VAL LYS SEQRES 6 A 878 VAL TYR ASN ARG GLN THR ILE GLN VAL SER LEU MET LEU SEQRES 7 A 878 ASN GLY TRP PRO VAL ILE SER ALA PHE ALA GLY ASP GLN SEQRES 8 A 878 ASP VAL THR ARG GLU ALA ALA SER ASN GLY VAL LEU ILE SEQRES 9 A 878 GLN MET GLU LYS GLY ASP ARG ALA TYR LEU LYS LEU GLU SEQRES 10 A 878 ARG GLY ASN LEU MET GLY GLY TRP LYS TYR SER THR PHE SEQRES 11 A 878 SER GLY PHE LEU VAL PHE PRO LEU GLY SER GLU LEU GLY SEQRES 12 A 878 SER GLY SER ALA LYS VAL ALA PHE SER ALA ILE ARG SER SEQRES 13 A 878 THR ASN HIS GLU PRO SER GLU MET SER ASN ARG THR MET SEQRES 14 A 878 ILE ILE TYR PHE ASP GLN VAL LEU VAL ASN ILE GLY ASN SEQRES 15 A 878 ASN PHE ASP SER GLU ARG SER THR PHE ILE ALA PRO ARG SEQRES 16 A 878 LYS GLY ILE TYR SER PHE ASN PHE HIS VAL VAL LYS VAL SEQRES 17 A 878 TYR ASN ARG GLN THR ILE GLN VAL SER LEU MET LEU ASN SEQRES 18 A 878 GLY TRP PRO VAL ILE SER ALA PHE ALA GLY ASP GLN ASP SEQRES 19 A 878 VAL THR ARG GLU ALA ALA SER ASN GLY VAL LEU ILE GLN SEQRES 20 A 878 MET GLU LYS GLY ASP ARG ALA TYR LEU LYS LEU GLU ARG SEQRES 21 A 878 GLY ASN LEU MET GLY GLY TRP LYS TYR SER THR PHE SER SEQRES 22 A 878 GLY PHE LEU VAL PHE PRO LEU GLY SER ALA SER GLY SER SEQRES 23 A 878 GLY SER ALA LYS VAL ALA PHE SER ALA ILE ARG SER THR SEQRES 24 A 878 ASN HIS GLU PRO SER GLU MET SER ASN ARG THR MET ILE SEQRES 25 A 878 ILE TYR PHE ASP GLN VAL LEU VAL ASN ILE GLY ASN ASN SEQRES 26 A 878 PHE ASP SER GLU ARG SER THR PHE ILE ALA PRO ARG LYS SEQRES 27 A 878 GLY ILE TYR SER PHE ASN PHE HIS VAL VAL LYS VAL TYR SEQRES 28 A 878 ASN ARG GLN THR ILE GLN VAL SER LEU MET LEU ASN GLY SEQRES 29 A 878 TRP PRO VAL ILE SER ALA PHE ALA GLY ASP GLN ASP VAL SEQRES 30 A 878 THR ARG GLU ALA ALA SER ASN GLY VAL LEU ILE GLN MET SEQRES 31 A 878 GLU LYS GLY ASP ARG ALA TYR LEU LYS LEU GLU ARG GLY SEQRES 32 A 878 ASN LEU MET GLY GLY TRP LYS TYR SER THR PHE SER GLY SEQRES 33 A 878 PHE LEU VAL PHE PRO LEU GLY THR GLY GLY SER GLY GLY SEQRES 34 A 878 SER GLY GLY SER GLY GLY SER GLY GLY SER GLY GLY SER SEQRES 35 A 878 GLY GLY SER GLY GLY SER GLY GLY SER GLY GLY SER ASP SEQRES 36 A 878 SER ILE ILE HIS ILE GLY ALA ILE PHE ASP GLU SER ALA SEQRES 37 A 878 LYS LYS ASP ASP GLU VAL PHE ARG THR ALA VAL GLY ASP SEQRES 38 A 878 LEU ASN GLN ASN GLU GLU ILE LEU GLN THR GLU LYS ILE SEQRES 39 A 878 THR PHE SER VAL THR PHE VAL ASP GLY ASN ASN PRO PHE SEQRES 40 A 878 GLN ALA VAL GLN GLU ALA CYS GLU LEU MET ASN GLN GLY SEQRES 41 A 878 ILE LEU ALA LEU VAL SER SER ILE GLY CYS THR SER ALA SEQRES 42 A 878 GLY SER LEU GLN SER LEU ALA ASP ALA MET HIS ILE PRO SEQRES 43 A 878 HIS LEU PHE ILE GLN ARG SER THR ALA GLY THR PRO ARG SEQRES 44 A 878 SER GLY CYS GLY LEU THR ARG SER ASN ARG ASN ASP ASP SEQRES 45 A 878 TYR THR LEU SER VAL ARG PRO PRO VAL TYR LEU HIS ASP SEQRES 46 A 878 VAL ILE LEU ARG VAL VAL THR GLU TYR ALA TRP GLN LYS SEQRES 47 A 878 PHE ILE ILE PHE TYR ASP SER GLU TYR ASP ILE ARG GLY SEQRES 48 A 878 ILE GLN GLU PHE LEU ASP LYS VAL SER GLN GLN GLY MET SEQRES 49 A 878 ASP VAL ALA LEU GLN LYS VAL GLU ASN ASN ILE ASN LYS SEQRES 50 A 878 MET ILE THR THR LEU PHE ASP THR MET ARG ILE GLU GLU SEQRES 51 A 878 LEU ASN ARG TYR ARG ASP THR LEU ARG ARG ALA ILE LEU SEQRES 52 A 878 VAL MET ASN PRO ALA THR ALA LYS SER PHE ILE THR GLU SEQRES 53 A 878 VAL VAL GLU THR ASN LEU VAL ALA PHE ASP CYS HIS TRP SEQRES 54 A 878 ILE ILE ILE ASN GLU GLU ILE ASN ASP VAL ASP VAL GLN SEQRES 55 A 878 GLU LEU VAL ARG ARG SER ILE GLY ARG LEU THR ILE ILE SEQRES 56 A 878 ARG GLN THR PHE PRO VAL PRO GLN ASN ILE SER GLN ARG SEQRES 57 A 878 CYS PHE ARG GLY ASN HIS ARG ILE SER SER THR LEU CYS SEQRES 58 A 878 ASP PRO LYS ASP PRO PHE ALA GLN ASN MET GLU ILE SER SEQRES 59 A 878 ASN LEU TYR ILE TYR ASP THR VAL LEU LEU LEU ALA ASN SEQRES 60 A 878 ALA PHE HIS LYS LYS LEU GLU ASP ARG LYS TRP HIS SER SEQRES 61 A 878 MET ALA SER LEU SER CYS ILE ARG LYS ASN SER LYS PRO SEQRES 62 A 878 TRP GLN GLY GLY ARG SER MET LEU GLU THR ILE LYS LYS SEQRES 63 A 878 GLY GLY VAL SER GLY LEU THR GLY GLU LEU GLU PHE GLY SEQRES 64 A 878 GLU ASN GLY GLY ASN PRO ASN VAL HIS PHE GLU ILE LEU SEQRES 65 A 878 GLY THR ASN TYR GLY GLU GLU LEU GLY ARG GLY VAL ARG SEQRES 66 A 878 LYS LEU GLY CYS TRP ASN PRO VAL THR GLY LEU ASN GLY SEQRES 67 A 878 SER LEU THR ASP LYS LYS LEU GLU ASN ASN MET ARG GLY SEQRES 68 A 878 LYS HIS HIS HIS HIS HIS HIS HET CA A1001 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ HELIX 1 AA1 SER A 75 MET A 82 1 8 HELIX 2 AA2 SER A 217 MET A 224 1 8 HELIX 3 AA3 ALA A 523 GLN A 539 1 17 HELIX 4 AA4 ASN A 560 GLY A 575 1 16 HELIX 5 AA5 GLY A 584 HIS A 599 1 16 HELIX 6 AA6 TYR A 637 TYR A 649 1 13 HELIX 7 AA7 ASP A 663 GLY A 666 5 4 HELIX 8 AA8 ILE A 667 GLN A 677 1 11 HELIX 9 AA9 ASN A 689 MET A 701 1 13 HELIX 10 AB1 ARG A 702 LEU A 713 1 12 HELIX 11 AB2 ASN A 721 THR A 735 1 15 HELIX 12 AB3 ASN A 752 SER A 763 1 12 HELIX 13 AB4 ASN A 779 ARG A 783 5 5 HELIX 14 AB5 SER A 792 ASP A 797 1 6 HELIX 15 AB6 ASP A 800 MET A 806 1 7 HELIX 16 AB7 GLU A 807 ASP A 830 1 24 HELIX 17 AB8 GLY A 851 LYS A 861 1 11 SHEET 1 AA1 5 GLN A 88 ILE A 93 0 SHEET 2 AA1 5 ALA A 63 ILE A 67 -1 N ILE A 67 O GLN A 88 SHEET 3 AA1 5 THR A 184 PRO A 192 -1 O GLY A 187 N PHE A 64 SHEET 4 AA1 5 GLY A 110 ARG A 124 -1 N HIS A 117 O THR A 184 SHEET 5 AA1 5 VAL A 148 MET A 161 -1 O ILE A 159 N TYR A 112 SHEET 1 AA2 5 PHE A 97 ASP A 98 0 SHEET 2 AA2 5 THR A 103 ILE A 105 -1 O THR A 103 N ASP A 98 SHEET 3 AA2 5 ARG A 166 ARG A 173 -1 O ALA A 167 N PHE A 104 SHEET 4 AA2 5 ILE A 127 LEU A 133 -1 N MET A 132 O TYR A 168 SHEET 5 AA2 5 TRP A 136 ALA A 143 -1 O TRP A 136 N LEU A 133 SHEET 1 AA3 5 GLN A 230 ILE A 235 0 SHEET 2 AA3 5 ALA A 205 ILE A 209 -1 N ILE A 209 O GLN A 230 SHEET 3 AA3 5 THR A 326 PRO A 334 -1 O GLY A 329 N PHE A 206 SHEET 4 AA3 5 GLY A 252 VAL A 263 -1 N SER A 255 O PHE A 330 SHEET 5 AA3 5 ARG A 292 MET A 303 -1 O GLU A 293 N LYS A 262 SHEET 1 AA4 5 PHE A 239 ASP A 240 0 SHEET 2 AA4 5 THR A 245 ILE A 247 -1 O THR A 245 N ASP A 240 SHEET 3 AA4 5 ARG A 308 ARG A 315 -1 O ALA A 309 N PHE A 246 SHEET 4 AA4 5 GLN A 270 LEU A 275 -1 N MET A 274 O TYR A 310 SHEET 5 AA4 5 TRP A 278 PHE A 284 -1 O TRP A 278 N LEU A 275 SHEET 1 AA5 5 GLN A 372 ILE A 377 0 SHEET 2 AA5 5 ALA A 347 ILE A 351 -1 N ILE A 351 O GLN A 372 SHEET 3 AA5 5 THR A 468 PRO A 476 -1 O PHE A 469 N ALA A 350 SHEET 4 AA5 5 GLY A 394 VAL A 405 -1 N HIS A 401 O THR A 468 SHEET 5 AA5 5 ARG A 434 MET A 445 -1 O ILE A 443 N TYR A 396 SHEET 1 AA6 5 PHE A 381 ASP A 382 0 SHEET 2 AA6 5 THR A 387 ILE A 389 -1 O THR A 387 N ASP A 382 SHEET 3 AA6 5 ARG A 450 ARG A 457 -1 O ALA A 451 N PHE A 388 SHEET 4 AA6 5 ILE A 411 LEU A 417 -1 N MET A 416 O TYR A 452 SHEET 5 AA6 5 TRP A 420 ALA A 427 -1 O TRP A 420 N LEU A 417 SHEET 1 AA7 5 THR A 550 VAL A 556 0 SHEET 2 AA7 5 HIS A 514 ASP A 520 1 N PHE A 519 O VAL A 556 SHEET 3 AA7 5 LEU A 579 ILE A 583 1 O VAL A 580 N GLY A 516 SHEET 4 AA7 5 HIS A 602 GLN A 606 1 O LEU A 603 N LEU A 579 SHEET 5 AA7 5 THR A 629 SER A 631 1 O LEU A 630 N HIS A 602 SHEET 1 AA8 8 ASP A 680 VAL A 686 0 SHEET 2 AA8 8 LYS A 653 ASP A 659 1 N TYR A 658 O VAL A 686 SHEET 3 AA8 8 ARG A 715 VAL A 719 1 O VAL A 719 N PHE A 657 SHEET 4 AA8 8 HIS A 743 ILE A 747 1 O ILE A 745 N LEU A 718 SHEET 5 AA8 8 ARG A 766 GLN A 772 1 O ILE A 770 N ILE A 746 SHEET 6 AA8 8 PHE A 884 THR A 889 -1 O LEU A 887 N ILE A 769 SHEET 7 AA8 8 ARG A 900 ASN A 906 -1 O TRP A 905 N PHE A 884 SHEET 8 AA8 8 GLY A 910 GLY A 913 -1 O ASN A 912 N CYS A 904 SHEET 1 AA9 2 PHE A 785 ARG A 786 0 SHEET 2 AA9 2 HIS A 789 ARG A 790 -1 O HIS A 789 N ARG A 786 SHEET 1 AB1 2 GLY A 863 GLY A 866 0 SHEET 2 AB1 2 GLY A 869 GLU A 872 -1 O GLY A 869 N GLY A 866 SSBOND 1 CYS A 569 CYS A 841 1555 1555 2.03 SSBOND 2 CYS A 585 CYS A 617 1555 1555 2.03 SSBOND 3 CYS A 784 CYS A 796 1555 1555 2.02 LINK O VAL A 760 CA CA A1001 1555 1555 2.95 LINK O SER A 763 CA CA A1001 1555 1555 2.77 SITE 1 AC1 6 GLU A 734 ASN A 736 VAL A 760 ARG A 761 SITE 2 AC1 6 SER A 763 TYR A 891 CRYST1 142.680 142.680 276.140 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007009 0.004046 0.000000 0.00000 SCALE2 0.000000 0.008093 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003621 0.00000