HEADER TRANSPORT PROTEIN 06-JUN-16 5KCJ TITLE STRUCTURE OF THE HUMAN GLUN1/GLUN2A LBD IN COMPLEX WITH GNE6901 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE RECEPTOR IONOTROPIC, NMDA 2A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN (UNP RESIDUES 401-539, GT LINKER, UNP COMPND 5 RESIDUES 661-802); COMPND 6 SYNONYM: GLUN2A, GLUTAMATE [NMDA] RECEPTOR SUBUNIT EPSILON-1, N- COMPND 7 METHYL D-ASPARTATE RECEPTOR SUBTYPE 2A, HNR2A; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: GLUTAMATE RECEPTOR IONOTROPIC, NMDA 1; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: LIGAND BINDING DOMAIN (UNP RESIDUES 415-565, GT LINKER, UNP COMPND 13 RESIDUES 684-821); COMPND 14 SYNONYM: GLUN1, GLUTAMATE [NMDA] RECEPTOR SUBUNIT ZETA-1, N-METHYL-D- COMPND 15 ASPARTATE RECEPTOR SUBUNIT NR1, NMD-R1; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GRIN2A, NMDAR2A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: GRIN1, NMDAR1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GRIN1, GRIN2A, NMDA RECEPTOR, GLYCINE, GLUTAMATE, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.J.A.WALLWEBER,P.J.LUPARDUS REVDAT 1 13-JUL-16 5KCJ 0 SPRSDE 13-JUL-16 5KCJ 5H8R JRNL AUTH D.H.HACKOS,P.J.LUPARDUS,T.GRAND,Y.CHEN,T.M.WANG,P.REYNEN, JRNL AUTH 2 A.GUSTAFSON,H.J.WALLWEBER,M.VOLGRAF,B.D.SELLERS,J.B.SCHWARZ, JRNL AUTH 3 P.PAOLETTI,M.SHENG,Q.ZHOU,J.E.HANSON JRNL TITL POSITIVE ALLOSTERIC MODULATORS OF GLUN2A-CONTAINING NMDARS JRNL TITL 2 WITH DISTINCT MODES OF ACTION AND IMPACTS ON CIRCUIT JRNL TITL 3 FUNCTION. JRNL REF NEURON V. 89 983 2016 JRNL REFN ISSN 1097-4199 JRNL PMID 26875626 JRNL DOI 10.1016/J.NEURON.2016.01.016 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 36796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1876 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 18 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.15 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.72 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2876 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2018 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2735 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE : 0.2947 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 141 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4367 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 268 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.15870 REMARK 3 B22 (A**2) : 7.50130 REMARK 3 B33 (A**2) : -9.66010 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.229 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.202 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.170 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.194 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.168 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4563 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6190 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1594 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 108 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 693 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4563 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 599 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5518 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.05 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.25 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.22 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KCJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222020. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36796 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 124.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.49500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.0, 10-13% PEG8000, 2 REMARK 280 MM CALCIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.20500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.35000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.86500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.35000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.20500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.86500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 PRO A 3 REMARK 465 ASP A 4 REMARK 465 HIS A 284 REMARK 465 ASN A 285 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 MET B 3 REMARK 465 SER B 4 REMARK 465 ASN B 100 REMARK 465 ASN B 101 REMARK 465 SER B 102 REMARK 465 TYR B 288 REMARK 465 GLN B 289 REMARK 465 GLU B 290 REMARK 465 CYS B 291 REMARK 465 ASP B 292 REMARK 465 SER B 293 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 5 CG OD1 OD2 REMARK 470 ASP A 25 CG OD1 OD2 REMARK 470 LEU A 27 CG CD1 CD2 REMARK 470 THR A 28 OG1 CG2 REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 ARG A 33 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 144 CG CD OE1 NE2 REMARK 470 SER A 149 OG REMARK 470 GLU A 226 CG CD OE1 OE2 REMARK 470 LYS A 229 CG CD CE NZ REMARK 470 SER A 235 OG REMARK 470 THR B 5 OG1 CG2 REMARK 470 ASP B 50 CG OD1 OD2 REMARK 470 THR B 51 OG1 CG2 REMARK 470 ARG B 77 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 98 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 103 CG OD1 ND2 REMARK 470 GLU B 106 CG CD OE1 OE2 REMARK 470 ASP B 170 CG OD1 OD2 REMARK 470 LYS B 171 CG CD CE NZ REMARK 470 GLU B 244 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 16 C - N - CD ANGL. DEV. = 17.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 15 90.10 -168.80 REMARK 500 ARG A 33 -130.83 52.65 REMARK 500 LYS A 74 65.39 64.34 REMARK 500 LYS A 86 -107.49 -121.66 REMARK 500 ASN A 96 -167.86 -109.22 REMARK 500 ASN A 170 -0.09 78.55 REMARK 500 THR A 242 -156.26 -152.65 REMARK 500 GLN B 14 90.75 -169.84 REMARK 500 ASN B 36 2.89 -67.77 REMARK 500 ASP B 50 97.33 -64.00 REMARK 500 GLN B 145 -149.60 -155.74 REMARK 500 GLU B 244 -135.61 -101.03 REMARK 500 VAL B 286 -77.63 -101.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLU A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6RM B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5H8F RELATED DB: PDB REMARK 900 RELATED ID: 5H8H RELATED DB: PDB REMARK 900 RELATED ID: 5H8N RELATED DB: PDB REMARK 900 RELATED ID: 5H8Q RELATED DB: PDB REMARK 900 RELATED ID: 5H8S RELATED DB: PDB DBREF 5KCJ A 3 141 UNP Q12879 NMDE1_HUMAN 401 539 DBREF 5KCJ A 144 285 UNP Q12879 NMDE1_HUMAN 661 802 DBREF 5KCJ B 3 153 UNP Q05586 NMDZ1_HUMAN 415 565 DBREF 5KCJ B 156 293 UNP Q05586 NMDZ1_HUMAN 684 821 SEQADV 5KCJ GLY A 1 UNP Q12879 EXPRESSION TAG SEQADV 5KCJ SER A 2 UNP Q12879 EXPRESSION TAG SEQADV 5KCJ GLY A 142 UNP Q12879 LINKER SEQADV 5KCJ THR A 143 UNP Q12879 LINKER SEQADV 5KCJ GLY B 1 UNP Q05586 EXPRESSION TAG SEQADV 5KCJ SER B 2 UNP Q05586 EXPRESSION TAG SEQADV 5KCJ GLY B 154 UNP Q05586 LINKER SEQADV 5KCJ THR B 155 UNP Q05586 LINKER SEQRES 1 A 285 GLY SER PRO ASP ASP ASN HIS LEU SER ILE VAL THR LEU SEQRES 2 A 285 GLU GLU ALA PRO PHE VAL ILE VAL GLU ASP ILE ASP PRO SEQRES 3 A 285 LEU THR GLU THR CYS VAL ARG ASN THR VAL PRO CYS ARG SEQRES 4 A 285 LYS PHE VAL LYS ILE ASN ASN SER THR ASN GLU GLY MET SEQRES 5 A 285 ASN VAL LYS LYS CYS CYS LYS GLY PHE CYS ILE ASP ILE SEQRES 6 A 285 LEU LYS LYS LEU SER ARG THR VAL LYS PHE THR TYR ASP SEQRES 7 A 285 LEU TYR LEU VAL THR ASN GLY LYS HIS GLY LYS LYS VAL SEQRES 8 A 285 ASN ASN VAL TRP ASN GLY MET ILE GLY GLU VAL VAL TYR SEQRES 9 A 285 GLN ARG ALA VAL MET ALA VAL GLY SER LEU THR ILE ASN SEQRES 10 A 285 GLU GLU ARG SER GLU VAL VAL ASP PHE SER VAL PRO PHE SEQRES 11 A 285 VAL GLU THR GLY ILE SER VAL MET VAL SER ARG GLY THR SEQRES 12 A 285 GLN VAL THR GLY LEU SER ASP LYS LYS PHE GLN ARG PRO SEQRES 13 A 285 HIS ASP TYR SER PRO PRO PHE ARG PHE GLY THR VAL PRO SEQRES 14 A 285 ASN GLY SER THR GLU ARG ASN ILE ARG ASN ASN TYR PRO SEQRES 15 A 285 TYR MET HIS GLN TYR MET THR LYS PHE ASN GLN LYS GLY SEQRES 16 A 285 VAL GLU ASP ALA LEU VAL SER LEU LYS THR GLY LYS LEU SEQRES 17 A 285 ASP ALA PHE ILE TYR ASP ALA ALA VAL LEU ASN TYR LYS SEQRES 18 A 285 ALA GLY ARG ASP GLU GLY CYS LYS LEU VAL THR ILE GLY SEQRES 19 A 285 SER GLY TYR ILE PHE ALA THR THR GLY TYR GLY ILE ALA SEQRES 20 A 285 LEU GLN LYS GLY SER PRO TRP LYS ARG GLN ILE ASP LEU SEQRES 21 A 285 ALA LEU LEU GLN PHE VAL GLY ASP GLY GLU MET GLU GLU SEQRES 22 A 285 LEU GLU THR LEU TRP LEU THR GLY ILE CYS HIS ASN SEQRES 1 B 293 GLY SER MET SER THR ARG LEU LYS ILE VAL THR ILE HIS SEQRES 2 B 293 GLN GLU PRO PHE VAL TYR VAL LYS PRO THR LEU SER ASP SEQRES 3 B 293 GLY THR CYS LYS GLU GLU PHE THR VAL ASN GLY ASP PRO SEQRES 4 B 293 VAL LYS LYS VAL ILE CYS THR GLY PRO ASN ASP THR SER SEQRES 5 B 293 PRO GLY SER PRO ARG HIS THR VAL PRO GLN CYS CYS TYR SEQRES 6 B 293 GLY PHE CYS ILE ASP LEU LEU ILE LYS LEU ALA ARG THR SEQRES 7 B 293 MET ASN PHE THR TYR GLU VAL HIS LEU VAL ALA ASP GLY SEQRES 8 B 293 LYS PHE GLY THR GLN GLU ARG VAL ASN ASN SER ASN LYS SEQRES 9 B 293 LYS GLU TRP ASN GLY MET MET GLY GLU LEU LEU SER GLY SEQRES 10 B 293 GLN ALA ASP MET ILE VAL ALA PRO LEU THR ILE ASN ASN SEQRES 11 B 293 GLU ARG ALA GLN TYR ILE GLU PHE SER LYS PRO PHE LYS SEQRES 12 B 293 TYR GLN GLY LEU THR ILE LEU VAL LYS LYS GLY THR ARG SEQRES 13 B 293 ILE THR GLY ILE ASN ASP PRO ARG LEU ARG ASN PRO SER SEQRES 14 B 293 ASP LYS PHE ILE TYR ALA THR VAL LYS GLN SER SER VAL SEQRES 15 B 293 ASP ILE TYR PHE ARG ARG GLN VAL GLU LEU SER THR MET SEQRES 16 B 293 TYR ARG HIS MET GLU LYS HIS ASN TYR GLU SER ALA ALA SEQRES 17 B 293 GLU ALA ILE GLN ALA VAL ARG ASP ASN LYS LEU HIS ALA SEQRES 18 B 293 PHE ILE TRP ASP SER ALA VAL LEU GLU PHE GLU ALA SER SEQRES 19 B 293 GLN LYS CYS ASP LEU VAL THR THR GLY GLU LEU PHE PHE SEQRES 20 B 293 ARG SER GLY PHE GLY ILE GLY MET ARG LYS ASP SER PRO SEQRES 21 B 293 TRP LYS GLN ASN VAL SER LEU SER ILE LEU LYS SER HIS SEQRES 22 B 293 GLU ASN GLY PHE MET GLU ASP LEU ASP LYS THR TRP VAL SEQRES 23 B 293 ARG TYR GLN GLU CYS ASP SER HET ACT A 301 4 HET GLU A 302 10 HET GLY B 301 5 HET 6RM B 302 25 HETNAM ACT ACETATE ION HETNAM GLU GLUTAMIC ACID HETNAM GLY GLYCINE HETNAM 6RM 7-[(4-FLUORANYLPHENOXY)METHYL]-3-[(1~{R},2~{R})-2- HETNAM 2 6RM (HYDROXYMETHYL)CYCLOPROPYL]-2-METHYL-[1,3]THIAZOLO[3, HETNAM 3 6RM 2-A]PYRIMIDIN-5-ONE FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 GLU C5 H9 N O4 FORMUL 5 GLY C2 H5 N O2 FORMUL 6 6RM C18 H17 F N2 O3 S FORMUL 7 HOH *268(H2 O) HELIX 1 AA1 GLY A 60 LYS A 74 1 15 HELIX 2 AA2 ASN A 96 TYR A 104 1 9 HELIX 3 AA3 ASN A 117 GLU A 122 1 6 HELIX 4 AA4 ASP A 150 ARG A 155 1 6 HELIX 5 AA5 PRO A 156 TYR A 159 5 4 HELIX 6 AA6 GLY A 171 TYR A 181 1 11 HELIX 7 AA7 TYR A 181 THR A 189 1 9 HELIX 8 AA8 LYS A 190 ASN A 192 5 3 HELIX 9 AA9 GLY A 195 THR A 205 1 11 HELIX 10 AB1 ALA A 215 ASP A 225 1 11 HELIX 11 AB2 ILE A 233 TYR A 237 1 5 HELIX 12 AB3 TRP A 254 ASP A 268 1 15 HELIX 13 AB4 GLY A 269 LEU A 279 1 11 HELIX 14 AB5 GLY B 66 ASN B 80 1 15 HELIX 15 AB6 ASN B 108 SER B 116 1 9 HELIX 16 AB7 ASN B 129 GLN B 134 1 6 HELIX 17 AB8 ASP B 162 ASN B 167 1 6 HELIX 18 AB9 SER B 180 GLN B 189 1 10 HELIX 19 AC1 LEU B 192 GLU B 200 1 9 HELIX 20 AC2 SER B 206 ASP B 216 1 11 HELIX 21 AC3 SER B 226 LYS B 236 1 11 HELIX 22 AC4 TRP B 261 ASN B 275 1 15 HELIX 23 AC5 GLY B 276 VAL B 286 1 11 SHEET 1 AA1 8 ILE A 20 ASP A 23 0 SHEET 2 AA1 8 GLY A 51 LYS A 59 -1 O LYS A 59 N ILE A 20 SHEET 3 AA1 8 VAL A 36 LYS A 43 -1 N VAL A 36 O CYS A 58 SHEET 4 AA1 8 THR A 76 LEU A 81 1 O LEU A 81 N ARG A 39 SHEET 5 AA1 8 HIS A 7 THR A 12 1 N LEU A 8 O THR A 76 SHEET 6 AA1 8 MET A 109 ALA A 110 1 O MET A 109 N VAL A 11 SHEET 7 AA1 8 ALA A 247 LEU A 248 -1 O ALA A 247 N ALA A 110 SHEET 8 AA1 8 ASP A 125 PHE A 126 -1 N ASP A 125 O LEU A 248 SHEET 1 AA2 2 LYS A 90 VAL A 91 0 SHEET 2 AA2 2 VAL A 94 TRP A 95 -1 O VAL A 94 N VAL A 91 SHEET 1 AA3 4 PHE A 165 GLY A 166 0 SHEET 2 AA3 4 ALA A 210 ASP A 214 1 O ILE A 212 N GLY A 166 SHEET 3 AA3 4 VAL A 131 SER A 140 -1 N MET A 138 O PHE A 211 SHEET 4 AA3 4 LEU A 230 THR A 232 -1 O VAL A 231 N VAL A 139 SHEET 1 AA4 4 PHE A 165 GLY A 166 0 SHEET 2 AA4 4 ALA A 210 ASP A 214 1 O ILE A 212 N GLY A 166 SHEET 3 AA4 4 VAL A 131 SER A 140 -1 N MET A 138 O PHE A 211 SHEET 4 AA4 4 PHE A 239 TYR A 244 -1 O PHE A 239 N ILE A 135 SHEET 1 AA5 8 TYR B 19 PRO B 22 0 SHEET 2 AA5 8 THR B 59 TYR B 65 -1 O TYR B 65 N TYR B 19 SHEET 3 AA5 8 VAL B 43 PRO B 48 -1 N VAL B 43 O CYS B 64 SHEET 4 AA5 8 THR B 82 LEU B 87 1 O LEU B 87 N THR B 46 SHEET 5 AA5 8 ARG B 6 THR B 11 1 N ILE B 9 O GLU B 84 SHEET 6 AA5 8 MET B 121 ILE B 122 1 O MET B 121 N VAL B 10 SHEET 7 AA5 8 GLY B 254 ARG B 256 -1 O GLY B 254 N ILE B 122 SHEET 8 AA5 8 ILE B 136 PHE B 138 -1 N GLU B 137 O MET B 255 SHEET 1 AA6 2 GLN B 96 ARG B 98 0 SHEET 2 AA6 2 LYS B 105 TRP B 107 -1 O GLU B 106 N GLU B 97 SHEET 1 AA7 4 TYR B 174 ALA B 175 0 SHEET 2 AA7 4 ALA B 221 ASP B 225 1 O ILE B 223 N ALA B 175 SHEET 3 AA7 4 LYS B 143 LYS B 152 -1 N LEU B 150 O PHE B 222 SHEET 4 AA7 4 LEU B 239 PHE B 251 -1 O VAL B 240 N VAL B 151 SSBOND 1 CYS A 31 CYS A 57 1555 1555 2.02 SSBOND 2 CYS A 38 CYS A 58 1555 1555 2.04 SSBOND 3 CYS A 228 CYS A 283 1555 1555 2.04 SSBOND 4 CYS B 29 CYS B 63 1555 1555 2.03 SSBOND 5 CYS B 45 CYS B 64 1555 1555 2.04 CISPEP 1 ALA A 16 PRO A 17 0 3.90 CISPEP 2 SER A 160 PRO A 161 0 -1.63 CISPEP 3 GLU B 15 PRO B 16 0 -0.72 SITE 1 AC1 2 ARG A 39 TYR A 80 SITE 1 AC2 12 HIS A 87 SER A 113 LEU A 114 THR A 115 SITE 2 AC2 12 ARG A 120 GLY A 171 SER A 172 THR A 173 SITE 3 AC2 12 TYR A 213 ASP A 214 HOH A 432 HOH A 477 SITE 1 AC3 9 PHE B 93 PRO B 125 LEU B 126 THR B 127 SITE 2 AC3 9 ARG B 132 SER B 180 SER B 181 ASP B 225 SITE 3 AC3 9 PHE B 251 SITE 1 AC4 18 ILE A 116 PRO A 129 PHE A 130 VAL A 131 SITE 2 AC4 18 GLU A 132 THR A 241 THR A 242 GLY A 243 SITE 3 AC4 18 VAL A 266 ILE B 128 LYS B 140 PRO B 141 SITE 4 AC4 18 TYR B 144 GLY B 250 LEU B 270 HIS B 273 SITE 5 AC4 18 HOH B 462 HOH B 467 CRYST1 54.410 89.730 124.700 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018379 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011145 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008019 0.00000