HEADER TRANSFERASE/INHIBITOR 07-JUN-16 5KCV TITLE CRYSTAL STRUCTURE OF ALLOSTERIC INHIBITOR, ARQ 092, IN COMPLEX WITH TITLE 2 AUTOINHIBITED FORM OF AKT1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAC-ALPHA SERINE/THREONINE-PROTEIN KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN KINASE B,PKB,PROTEIN KINASE B ALPHA,PKB ALPHA,PROTO- COMPND 5 ONCOGENE C-AKT,RAC-PK-ALPHA; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AKT1, PKB, RAC; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9 KEYWDS AKT, ALLOSTERIC INHIBITOR, KINASE INHIBITOR, TRANSFERASE-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.EATHIRAJ REVDAT 3 27-SEP-23 5KCV 1 JRNL REMARK REVDAT 2 27-JUL-16 5KCV 1 JRNL REVDAT 1 29-JUN-16 5KCV 0 JRNL AUTH J.M.LAPIERRE,S.EATHIRAJ,D.VENSEL,Y.LIU,C.O.BULL, JRNL AUTH 2 S.CORNELL-KENNON,S.IIMURA,E.W.KELLEHER,D.E.KIZER,S.KOERNER, JRNL AUTH 3 S.MAKHIJA,A.MATSUDA,M.MOUSSA,N.NAMDEV,R.E.SAVAGE,J.SZWAYA, JRNL AUTH 4 E.VOLCKOVA,N.WESTLUND,H.WU,B.SCHWARTZ JRNL TITL DISCOVERY OF JRNL TITL 2 3-(3-(4-(1-AMINOCYCLOBUTYL)PHENYL)-5-PHENYL-3H-IMIDAZO[4, JRNL TITL 3 5-B]PYRIDIN-2-YL)PYRIDIN-2-AMINE (ARQ 092): AN ORALLY JRNL TITL 4 BIOAVAILABLE, SELECTIVE, AND POTENT ALLOSTERIC AKT JRNL TITL 5 INHIBITOR. JRNL REF J.MED.CHEM. V. 59 6455 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 27305487 JRNL DOI 10.1021/ACS.JMEDCHEM.6B00619 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.5 REMARK 3 NUMBER OF REFLECTIONS : 12090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 638 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 752 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2762 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.31000 REMARK 3 B22 (A**2) : -1.70000 REMARK 3 B33 (A**2) : 2.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.324 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.376 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.285 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.927 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2874 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2670 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3908 ; 1.526 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6117 ; 0.874 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 347 ; 6.672 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;37.776 ;23.692 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 430 ;18.776 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;21.066 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 420 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3242 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 692 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1406 ; 5.293 ; 6.699 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1405 ; 5.295 ; 6.697 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1747 ; 7.690 ;10.042 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1748 ; 7.689 ;10.043 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1468 ; 5.255 ; 6.893 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1469 ; 5.253 ; 6.892 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2160 ; 7.824 ;10.242 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 11491 ;11.888 ;62.699 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 11492 ;11.887 ;62.697 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5KCV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000221743. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.09280 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM V1.0 REMARK 200 DATA SCALING SOFTWARE : SCALA V1.0 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13431 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1MRV, 2UVM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% BUTANOL, 10MM AMMONIUM SULFATE, REMARK 280 0.1% 2-MERCAPTOETHANOL, 15% ETHYLENE GLYCOL, 50MM TRIS, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.36000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.39500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.81000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.39500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.36000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.81000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 GLY A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 GLU A -5 REMARK 465 ASN A -4 REMARK 465 LEU A -3 REMARK 465 TYR A -2 REMARK 465 PHE A -1 REMARK 465 GLN A 0 REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 VAL A 4 REMARK 465 ALA A 5 REMARK 465 LYS A 20 REMARK 465 GLN A 43 REMARK 465 ASP A 44 REMARK 465 VAL A 45 REMARK 465 ASP A 46 REMARK 465 GLN A 47 REMARK 465 ARG A 48 REMARK 465 GLU A 49 REMARK 465 THR A 105 REMARK 465 VAL A 106 REMARK 465 ALA A 107 REMARK 465 ASP A 108 REMARK 465 GLY A 109 REMARK 465 LEU A 110 REMARK 465 LYS A 111 REMARK 465 LYS A 112 REMARK 465 GLN A 113 REMARK 465 ALA A 114 REMARK 465 ALA A 115 REMARK 465 ALA A 116 REMARK 465 GLU A 117 REMARK 465 MET A 118 REMARK 465 ASP A 119 REMARK 465 PHE A 120 REMARK 465 ARG A 121 REMARK 465 SER A 122 REMARK 465 GLY A 123 REMARK 465 SER A 124 REMARK 465 PRO A 125 REMARK 465 SER A 126 REMARK 465 ASP A 127 REMARK 465 ASN A 128 REMARK 465 SER A 129 REMARK 465 GLY A 130 REMARK 465 ALA A 131 REMARK 465 GLU A 132 REMARK 465 GLU A 133 REMARK 465 MET A 134 REMARK 465 GLU A 135 REMARK 465 VAL A 136 REMARK 465 SER A 137 REMARK 465 LEU A 138 REMARK 465 ALA A 139 REMARK 465 LYS A 140 REMARK 465 PRO A 141 REMARK 465 LYS A 142 REMARK 465 HIS A 143 REMARK 465 GLU A 184 REMARK 465 VAL A 185 REMARK 465 ILE A 186 REMARK 465 VAL A 187 REMARK 465 ALA A 188 REMARK 465 LYS A 189 REMARK 465 ASP A 190 REMARK 465 GLU A 191 REMARK 465 VAL A 192 REMARK 465 ALA A 193 REMARK 465 HIS A 194 REMARK 465 THR A 195 REMARK 465 LEU A 196 REMARK 465 THR A 197 REMARK 465 GLU A 198 REMARK 465 ASN A 199 REMARK 465 ARG A 200 REMARK 465 LYS A 297 REMARK 465 GLU A 298 REMARK 465 GLY A 299 REMARK 465 ILE A 300 REMARK 465 LYS A 301 REMARK 465 ASP A 302 REMARK 465 GLY A 303 REMARK 465 ALA A 304 REMARK 465 THR A 305 REMARK 465 MET A 306 REMARK 465 LYS A 307 REMARK 465 THR A 308 REMARK 465 PHE A 309 REMARK 465 CYS A 310 REMARK 465 GLY A 311 REMARK 465 THR A 312 REMARK 465 ASP A 439 REMARK 465 GLU A 440 REMARK 465 GLU A 441 REMARK 465 PHE A 442 REMARK 465 THR A 443 REMARK 465 ALA A 444 REMARK 465 GLN A 445 REMARK 465 MET A 446 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 ILE A 19 CG1 CG2 CD1 REMARK 470 THR A 21 OG1 CG2 REMARK 470 ARG A 23 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 31 CG OD1 ND2 REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 ARG A 41 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 59 CG CD OE1 NE2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 ARG A 67 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 69 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 94 CG CD OE1 OE2 REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 GLN A 104 CG CD OE1 NE2 REMARK 470 ARG A 144 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 154 CG CD CE NZ REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 LYS A 168 CG CD CE NZ REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 ARG A 174 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 VAL A 201 CG1 CG2 REMARK 470 GLN A 203 CG CD OE1 NE2 REMARK 470 ARG A 206 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 214 CG CD CE NZ REMARK 470 ARG A 241 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 243 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 284 CG CD CE NZ REMARK 470 CYS A 296 SG REMARK 470 GLU A 314 CG CD OE1 OE2 REMARK 470 ARG A 346 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 355 CG CD OE1 OE2 REMARK 470 LYS A 356 CG CD CE NZ REMARK 470 ARG A 370 CG CD NE CZ NH1 NH2 REMARK 470 THR A 371 OG1 CG2 REMARK 470 LYS A 389 CG CD CE NZ REMARK 470 SER A 422 OG REMARK 470 LYS A 426 CG CD CE NZ REMARK 470 GLN A 428 CG CD OE1 NE2 REMARK 470 VAL A 429 CG1 CG2 REMARK 470 SER A 431 OG REMARK 470 ARG A 436 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 25 O ASP A 323 2.09 REMARK 500 OE2 GLU A 319 NH1 ARG A 391 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 41 109.46 -49.94 REMARK 500 TRP A 80 -105.62 61.45 REMARK 500 THR A 172 -21.72 -146.87 REMARK 500 THR A 219 -169.09 -106.51 REMARK 500 ARG A 243 -57.41 73.95 REMARK 500 ARG A 273 -16.44 71.61 REMARK 500 GLU A 319 -35.30 -27.71 REMARK 500 LEU A 321 -70.03 -50.27 REMARK 500 ASN A 351 139.85 170.82 REMARK 500 ASP A 398 -113.49 55.99 REMARK 500 PHE A 407 -38.09 -34.86 REMARK 500 GLN A 428 91.12 -66.70 REMARK 500 THR A 435 9.51 -69.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 679 DISTANCE = 6.09 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6S1 A 501 DBREF 5KCV A 2 446 UNP P31749 AKT1_HUMAN 2 446 SEQADV 5KCV MET A -13 UNP P31749 EXPRESSION TAG SEQADV 5KCV GLY A -12 UNP P31749 EXPRESSION TAG SEQADV 5KCV HIS A -11 UNP P31749 EXPRESSION TAG SEQADV 5KCV HIS A -10 UNP P31749 EXPRESSION TAG SEQADV 5KCV HIS A -9 UNP P31749 EXPRESSION TAG SEQADV 5KCV HIS A -8 UNP P31749 EXPRESSION TAG SEQADV 5KCV HIS A -7 UNP P31749 EXPRESSION TAG SEQADV 5KCV HIS A -6 UNP P31749 EXPRESSION TAG SEQADV 5KCV GLU A -5 UNP P31749 EXPRESSION TAG SEQADV 5KCV ASN A -4 UNP P31749 EXPRESSION TAG SEQADV 5KCV LEU A -3 UNP P31749 EXPRESSION TAG SEQADV 5KCV TYR A -2 UNP P31749 EXPRESSION TAG SEQADV 5KCV PHE A -1 UNP P31749 EXPRESSION TAG SEQADV 5KCV GLN A 0 UNP P31749 EXPRESSION TAG SEQADV 5KCV GLY A 1 UNP P31749 EXPRESSION TAG SEQADV 5KCV ALA A 114 UNP P31749 GLU 114 ENGINEERED MUTATION SEQADV 5KCV ALA A 115 UNP P31749 GLU 115 ENGINEERED MUTATION SEQADV 5KCV ALA A 116 UNP P31749 GLU 116 ENGINEERED MUTATION SEQRES 1 A 460 MET GLY HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE SEQRES 2 A 460 GLN GLY SER ASP VAL ALA ILE VAL LYS GLU GLY TRP LEU SEQRES 3 A 460 HIS LYS ARG GLY GLU TYR ILE LYS THR TRP ARG PRO ARG SEQRES 4 A 460 TYR PHE LEU LEU LYS ASN ASP GLY THR PHE ILE GLY TYR SEQRES 5 A 460 LYS GLU ARG PRO GLN ASP VAL ASP GLN ARG GLU ALA PRO SEQRES 6 A 460 LEU ASN ASN PHE SER VAL ALA GLN CYS GLN LEU MET LYS SEQRES 7 A 460 THR GLU ARG PRO ARG PRO ASN THR PHE ILE ILE ARG CYS SEQRES 8 A 460 LEU GLN TRP THR THR VAL ILE GLU ARG THR PHE HIS VAL SEQRES 9 A 460 GLU THR PRO GLU GLU ARG GLU GLU TRP THR THR ALA ILE SEQRES 10 A 460 GLN THR VAL ALA ASP GLY LEU LYS LYS GLN ALA ALA ALA SEQRES 11 A 460 GLU MET ASP PHE ARG SER GLY SER PRO SER ASP ASN SER SEQRES 12 A 460 GLY ALA GLU GLU MET GLU VAL SER LEU ALA LYS PRO LYS SEQRES 13 A 460 HIS ARG VAL THR MET ASN GLU PHE GLU TYR LEU LYS LEU SEQRES 14 A 460 LEU GLY LYS GLY THR PHE GLY LYS VAL ILE LEU VAL LYS SEQRES 15 A 460 GLU LYS ALA THR GLY ARG TYR TYR ALA MET LYS ILE LEU SEQRES 16 A 460 LYS LYS GLU VAL ILE VAL ALA LYS ASP GLU VAL ALA HIS SEQRES 17 A 460 THR LEU THR GLU ASN ARG VAL LEU GLN ASN SER ARG HIS SEQRES 18 A 460 PRO PHE LEU THR ALA LEU LYS TYR SER PHE GLN THR HIS SEQRES 19 A 460 ASP ARG LEU CYS PHE VAL MET GLU TYR ALA ASN GLY GLY SEQRES 20 A 460 GLU LEU PHE PHE HIS LEU SER ARG GLU ARG VAL PHE SER SEQRES 21 A 460 GLU ASP ARG ALA ARG PHE TYR GLY ALA GLU ILE VAL SER SEQRES 22 A 460 ALA LEU ASP TYR LEU HIS SER GLU LYS ASN VAL VAL TYR SEQRES 23 A 460 ARG ASP LEU LYS LEU GLU ASN LEU MET LEU ASP LYS ASP SEQRES 24 A 460 GLY HIS ILE LYS ILE THR ASP PHE GLY LEU CYS LYS GLU SEQRES 25 A 460 GLY ILE LYS ASP GLY ALA THR MET LYS THR PHE CYS GLY SEQRES 26 A 460 THR PRO GLU TYR LEU ALA PRO GLU VAL LEU GLU ASP ASN SEQRES 27 A 460 ASP TYR GLY ARG ALA VAL ASP TRP TRP GLY LEU GLY VAL SEQRES 28 A 460 VAL MET TYR GLU MET MET CYS GLY ARG LEU PRO PHE TYR SEQRES 29 A 460 ASN GLN ASP HIS GLU LYS LEU PHE GLU LEU ILE LEU MET SEQRES 30 A 460 GLU GLU ILE ARG PHE PRO ARG THR LEU GLY PRO GLU ALA SEQRES 31 A 460 LYS SER LEU LEU SER GLY LEU LEU LYS LYS ASP PRO LYS SEQRES 32 A 460 GLN ARG LEU GLY GLY GLY SER GLU ASP ALA LYS GLU ILE SEQRES 33 A 460 MET GLN HIS ARG PHE PHE ALA GLY ILE VAL TRP GLN HIS SEQRES 34 A 460 VAL TYR GLU LYS LYS LEU SER PRO PRO PHE LYS PRO GLN SEQRES 35 A 460 VAL THR SER GLU THR ASP THR ARG TYR PHE ASP GLU GLU SEQRES 36 A 460 PHE THR ALA GLN MET HET 6S1 A 501 33 HETNAM 6S1 3-[3-[4-(1-AZANYLCYCLOBUTYL)PHENYL]-5-PHENYL-IMIDAZO[4, HETNAM 2 6S1 5-B]PYRIDIN-2-YL]PYRIDIN-2-AMINE FORMUL 2 6S1 C27 H24 N6 FORMUL 3 HOH *79(H2 O) HELIX 1 AA1 LEU A 52 SER A 56 5 5 HELIX 2 AA2 THR A 92 GLN A 104 1 13 HELIX 3 AA3 THR A 146 ASN A 148 5 3 HELIX 4 AA4 GLU A 234 ARG A 243 1 10 HELIX 5 AA5 SER A 246 ASN A 269 1 24 HELIX 6 AA6 LYS A 276 GLU A 278 5 3 HELIX 7 AA7 ALA A 317 GLU A 322 1 6 HELIX 8 AA8 ARG A 328 GLY A 345 1 18 HELIX 9 AA9 ASP A 353 GLU A 364 1 12 HELIX 10 AB1 GLY A 373 LEU A 384 1 12 HELIX 11 AB2 ALA A 399 GLN A 404 1 6 HELIX 12 AB3 HIS A 405 ALA A 409 5 5 HELIX 13 AB4 VAL A 412 GLU A 418 1 7 SHEET 1 AA1 6 PHE A 35 TYR A 38 0 SHEET 2 AA1 6 TRP A 22 LEU A 29 -1 N TYR A 26 O TYR A 38 SHEET 3 AA1 6 LYS A 8 ARG A 15 -1 N LEU A 12 O ARG A 25 SHEET 4 AA1 6 THR A 82 HIS A 89 -1 O THR A 87 N ARG A 15 SHEET 5 AA1 6 THR A 72 GLN A 79 -1 N CYS A 77 O ILE A 84 SHEET 6 AA1 6 GLN A 61 THR A 65 -1 N GLN A 61 O ARG A 76 SHEET 1 AA2 5 PHE A 150 GLY A 159 0 SHEET 2 AA2 5 GLY A 162 GLU A 169 -1 O LEU A 166 N LYS A 154 SHEET 3 AA2 5 TYR A 175 LYS A 182 -1 O ILE A 180 N LYS A 163 SHEET 4 AA2 5 ARG A 222 GLU A 228 -1 O PHE A 225 N LYS A 179 SHEET 5 AA2 5 LEU A 213 GLN A 218 -1 N TYR A 215 O VAL A 226 SHEET 1 AA3 2 LEU A 280 LEU A 282 0 SHEET 2 AA3 2 ILE A 288 ILE A 290 -1 O LYS A 289 N MET A 281 SSBOND 1 CYS A 60 CYS A 77 1555 1555 2.06 CISPEP 1 ARG A 67 PRO A 68 0 -3.74 SITE 1 AC1 13 ASN A 53 GLN A 79 TRP A 80 THR A 82 SITE 2 AC1 13 LEU A 210 THR A 211 VAL A 270 TYR A 272 SITE 3 AC1 13 ASP A 274 ILE A 290 ASP A 292 HOH A 608 SITE 4 AC1 13 HOH A 635 CRYST1 44.720 87.620 128.790 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022362 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011413 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007765 0.00000