HEADER HYDROLASE 07-JUN-16 5KD2 TITLE BT_4244 METALLOPEPTIDASE FROM BACTEROIDES THETAIOTAOMICRON COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 274-857; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482; SOURCE 5 GENE: BT_4244; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS O-GLYCOPEPTIDASE, PF13402/M60-LIKE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR I.NOACH,A.B.BORASTON REVDAT 4 06-MAR-24 5KD2 1 REMARK REVDAT 3 08-FEB-17 5KD2 1 JRNL REVDAT 2 01-FEB-17 5KD2 1 JRNL REVDAT 1 11-JAN-17 5KD2 0 JRNL AUTH I.NOACH,E.FICKO-BLEAN,B.PLUVINAGE,C.STUART,M.L.JENKINS, JRNL AUTH 2 D.BROCHU,N.BUENBRAZO,W.WAKARCHUK,J.E.BURKE,M.GILBERT, JRNL AUTH 3 A.B.BORASTON JRNL TITL RECOGNITION OF PROTEIN-LINKED GLYCANS AS A DETERMINANT OF JRNL TITL 2 PEPTIDASE ACTIVITY. JRNL REF PROC. NATL. ACAD. SCI. V. 114 E679 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28096352 JRNL DOI 10.1073/PNAS.1615141114 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 37472 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1834 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2700 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 137 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4796 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 373 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.72000 REMARK 3 B22 (A**2) : 0.72000 REMARK 3 B33 (A**2) : -2.33000 REMARK 3 B12 (A**2) : 0.36000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.206 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.171 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.989 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4946 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4554 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6685 ; 1.528 ; 1.931 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10481 ; 0.816 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 594 ; 6.655 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 252 ;36.325 ;24.881 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 849 ;13.651 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;16.160 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 700 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5663 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1204 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2373 ; 2.312 ; 3.430 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2372 ; 2.311 ; 3.429 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2968 ; 3.296 ; 5.136 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2969 ; 3.296 ; 5.137 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2573 ; 2.975 ; 3.678 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2573 ; 2.974 ; 3.678 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3718 ; 4.502 ; 5.405 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6152 ; 5.932 ;28.044 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6008 ; 5.821 ;27.789 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5KD2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222030. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39361 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 70.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.36600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, K/NA TARTRATE, TRIS-HCL PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.71267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 121.42533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 121.42533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 60.71267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 251 REMARK 465 GLY A 252 REMARK 465 SER A 253 REMARK 465 SER A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 465 HIS A 260 REMARK 465 SER A 261 REMARK 465 SER A 262 REMARK 465 GLY A 263 REMARK 465 LEU A 264 REMARK 465 VAL A 265 REMARK 465 PRO A 266 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1189 O HOH A 1343 2.04 REMARK 500 O HOH A 1072 O HOH A 1343 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1221 O HOH A 1307 2655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 319 76.10 -118.95 REMARK 500 LEU A 354 39.70 -91.35 REMARK 500 TRP A 386 -128.13 -128.62 REMARK 500 SER A 429 132.68 -33.19 REMARK 500 LYS A 456 -36.93 67.24 REMARK 500 GLU A 535 42.66 -94.81 REMARK 500 SER A 537 -163.69 59.87 REMARK 500 TYR A 538 -78.68 -125.31 REMARK 500 SER A 542 -159.62 -153.80 REMARK 500 TYR A 544 -33.80 77.78 REMARK 500 SER A 588 -19.51 103.00 REMARK 500 GLN A 638 18.50 -149.42 REMARK 500 HIS A 657 -63.92 -94.68 REMARK 500 LYS A 662 93.94 -163.96 REMARK 500 ASP A 683 74.23 -164.15 REMARK 500 GLN A 722 97.44 -161.10 REMARK 500 ASN A 785 50.23 35.33 REMARK 500 LYS A 790 161.60 -46.77 REMARK 500 ASN A 817 -65.72 61.28 REMARK 500 ASN A 842 -5.64 76.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 574 NE2 REMARK 620 2 HIS A 578 NE2 100.9 REMARK 620 3 GLU A 591 OE1 93.6 105.8 REMARK 620 4 EDO A 902 O2 133.9 93.7 124.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 906 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KD5 RELATED DB: PDB REMARK 900 RELATED ID: 5KD8 RELATED DB: PDB REMARK 900 RELATED ID: 5KDJ RELATED DB: PDB REMARK 900 RELATED ID: 5KDN RELATED DB: PDB REMARK 900 RELATED ID: 5KDS RELATED DB: PDB REMARK 900 RELATED ID: 5KDU RELATED DB: PDB REMARK 900 RELATED ID: 5KDV RELATED DB: PDB REMARK 900 RELATED ID: 5KDW RELATED DB: PDB REMARK 900 RELATED ID: 5KDX RELATED DB: PDB DBREF 5KD2 A 274 857 UNP Q89ZX7 Q89ZX7_BACTN 274 857 SEQADV 5KD2 MET A 251 UNP Q89ZX7 INITIATING METHIONINE SEQADV 5KD2 GLY A 252 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD2 SER A 253 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD2 SER A 254 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD2 HIS A 255 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD2 HIS A 256 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD2 HIS A 257 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD2 HIS A 258 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD2 HIS A 259 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD2 HIS A 260 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD2 SER A 261 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD2 SER A 262 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD2 GLY A 263 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD2 LEU A 264 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD2 VAL A 265 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD2 PRO A 266 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD2 ARG A 267 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD2 GLY A 268 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD2 SER A 269 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD2 HIS A 270 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD2 MET A 271 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD2 ALA A 272 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD2 SER A 273 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD2 GLN A 575 UNP Q89ZX7 GLU 575 ENGINEERED MUTATION SEQRES 1 A 607 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 607 LEU VAL PRO ARG GLY SER HIS MET ALA SER ASP LYS THR SEQRES 3 A 607 LEU ASP LYS GLN LEU LEU THR VAL PHE THR ASP ILE THR SEQRES 4 A 607 CYS THR GLU ILE LYS ASN ASN VAL THR ASN GLU GLN ILE SEQRES 5 A 607 GLN ALA LEU PRO ASP TYR PHE VAL ARG ILE ALA GLU ALA SEQRES 6 A 607 VAL ARG ASP ASN THR TYR ASP LYS TRP GLU LYS GLU PHE SEQRES 7 A 607 ARG ILE ARG SER TYR GLU PRO TYR SER ASN ILE ALA GLU SEQRES 8 A 607 TRP ALA ASP LYS LEU MET THR LYS LYS TYR SER ASP LEU SEQRES 9 A 607 ASP ASN PRO THR GLY ILE SER VAL LYS ALA GLY ASP ASP SEQRES 10 A 607 ILE ILE VAL LEU VAL GLY ASP THR TYR GLY GLN ASN ILE SEQRES 11 A 607 SER MET GLN CYS ILE TRP GLU THR GLY THR GLU TYR LYS SEQRES 12 A 607 GLN THR ALA SER SER GLY ASP VAL TYR MET LEU ASN PRO SEQRES 13 A 607 GLY VAL ASN LYS LEU THR MET LYS GLY GLU GLY GLN LEU SEQRES 14 A 607 PHE VAL MET TYR ASN THR GLU LEU THR SER ASN THR ALA SEQRES 15 A 607 LYS PRO ILE LYS ILE HIS ILE PRO LEU GLY SER GLY THR SEQRES 16 A 607 VAL ASN GLY PHE PHE ASP LEU LYS GLU HIS LYS THR ASP SEQRES 17 A 607 GLU LYS TYR ALA GLU LEU LEU LYS LYS SER THR HIS LYS SEQRES 18 A 607 TYR PHE CYS ILE ARG GLY GLU LYS ILE MET PHE TYR PHE SEQRES 19 A 607 HIS ARG ASN LYS LEU LEU GLU TYR VAL PRO ASN ASN ILE SEQRES 20 A 607 LEU SER ALA ILE HIS LEU TRP ASP ASN ILE VAL GLY TRP SEQRES 21 A 607 GLN GLN GLU LEU MET GLY ILE ASP ASP VAL ARG PRO SER SEQRES 22 A 607 GLN VAL ASN ASN HIS LEU PHE ALA ILE SER PRO GLU GLY SEQRES 23 A 607 SER TYR MET TRP ALA SER ASP TYR GLN ILE GLY PHE VAL SEQRES 24 A 607 TYR THR TYR LEU GLY ASN ILE LEU LEU GLU ASP ASN VAL SEQRES 25 A 607 MET ALA ALA GLU ASP ASN ALA TRP GLY PRO ALA HIS GLN SEQRES 26 A 607 ILE GLY HIS VAL HIS GLN ALA ALA ILE ASN TRP ALA SER SEQRES 27 A 607 SER THR GLU SER SER ASN ASN LEU PHE SER ASN PHE ILE SEQRES 28 A 607 ILE TYR LYS LEU GLY LYS TYR LYS SER ARG GLY ASN GLY SEQRES 29 A 607 LEU GLY SER VAL ALA THR ALA ARG TYR ALA ASN GLY GLN SEQRES 30 A 607 ALA TRP TYR ASN MET GLY ASP ALA THR HIS GLN ASN GLU SEQRES 31 A 607 ASP THR GLU THR HIS MET ARG MET ASN TRP GLN LEU TRP SEQRES 32 A 607 ILE TYR TYR HIS ARG CYS GLU TYR LYS THR ASP PHE TRP SEQRES 33 A 607 GLN THR LEU PHE LYS LEU MET ARG GLU VAL ASN MET THR SEQRES 34 A 607 GLU GLY GLU ASP PRO GLY LYS LYS GLN LEU GLU PHE ALA SEQRES 35 A 607 LYS MET ALA SER LYS ALA ALA ASN GLN ASN LEU THR ASP SEQRES 36 A 607 PHE PHE GLU MET TRP GLY PHE PHE GLU PRO VAL ASN THR SEQRES 37 A 607 THR ILE GLU GLN TYR GLY THR TYR LYS TYR TYR VAL SER SEQRES 38 A 607 ASP ALA MET ILE ARG GLU ALA LYS GLU TYR MET ALA GLN SEQRES 39 A 607 PHE PRO ALA PRO LYS HIS ALA PHE GLN TYR ILE GLU ASP SEQRES 40 A 607 ARG LYS LYS SER GLU PHE PRO SER ASN ASP TYR ARG TYR SEQRES 41 A 607 SER ALA VAL GLY ASP VAL GLY TYR TYR THR GLN PHE LYS SEQRES 42 A 607 GLU ASN GLN LYS ILE THR LYS ALA ILE THR ALA GLU LEU SEQRES 43 A 607 ALA GLY ARG LYS VAL SER ILE GLN ASN GLY ASP GLU ALA SEQRES 44 A 607 VAL ALA PHE GLU LEU ARG GLU ASN ASP GLU ASN GLY LYS SEQRES 45 A 607 LEU LEU TYR PHE SER THR PHE THR THR PHE GLU ILE PRO SEQRES 46 A 607 SER SER ILE LEU MET VAL ASN ALA LYS LEU TYR ALA VAL SEQRES 47 A 607 GLN ALA ASP GLY LYS ARG ILE LEU LEU HET ZN A 901 1 HET EDO A 902 4 HET EDO A 903 4 HET EDO A 904 4 HET EDO A 905 4 HET EDO A 906 4 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN ZN 2+ FORMUL 3 EDO 5(C2 H6 O2) FORMUL 8 HOH *373(H2 O) HELIX 1 AA1 LYS A 275 PHE A 285 1 11 HELIX 2 AA2 THR A 298 ALA A 304 1 7 HELIX 3 AA3 PRO A 306 ASP A 318 1 13 HELIX 4 AA4 ASP A 322 ARG A 329 1 8 HELIX 5 AA5 ASN A 338 MET A 347 1 10 HELIX 6 AA6 LEU A 452 LYS A 456 1 5 HELIX 7 AA7 THR A 457 SER A 468 1 12 HELIX 8 AA8 ARG A 486 VAL A 493 1 8 HELIX 9 AA9 ILE A 497 GLY A 516 1 20 HELIX 10 AB1 TYR A 550 TYR A 552 5 3 HELIX 11 AB2 LEU A 553 LEU A 558 1 6 HELIX 12 AB3 LEU A 558 MET A 563 1 6 HELIX 13 AB4 ALA A 565 GLN A 581 1 17 HELIX 14 AB5 ALA A 582 ASN A 585 5 4 HELIX 15 AB6 ASN A 594 GLY A 606 1 13 HELIX 16 AB7 LEU A 615 ALA A 624 1 10 HELIX 17 AB8 ASP A 641 MET A 646 1 6 HELIX 18 AB9 MET A 646 HIS A 657 1 12 HELIX 19 AC1 ASP A 664 ASN A 677 1 14 HELIX 20 AC2 ASP A 683 ASN A 700 1 18 HELIX 21 AC3 LEU A 703 TRP A 710 1 8 HELIX 22 AC4 SER A 731 ALA A 743 1 13 HELIX 23 AC5 ALA A 751 ILE A 755 5 5 HELIX 24 AC6 LYS A 759 PHE A 763 5 5 HELIX 25 AC7 ASP A 767 VAL A 773 1 7 HELIX 26 AC8 TYR A 778 GLU A 784A 1 7 SHEET 1 AA1 4 ILE A 330 TYR A 333 0 SHEET 2 AA1 4 ILE A 435 HIS A 438 -1 O ILE A 435 N TYR A 333 SHEET 3 AA1 4 ASP A 367 VAL A 372 -1 N LEU A 371 O HIS A 438 SHEET 4 AA1 4 GLY A 407 THR A 412 -1 O LEU A 411 N ILE A 368 SHEET 1 AA2 5 ASP A 400 MET A 403 0 SHEET 2 AA2 5 SER A 381 ILE A 385 -1 N MET A 382 O TYR A 402 SHEET 3 AA2 5 GLY A 417 MET A 422 -1 O MET A 422 N SER A 381 SHEET 4 AA2 5 PRO A 357 VAL A 362 -1 N VAL A 362 O GLY A 417 SHEET 5 AA2 5 THR A 445 VAL A 446 -1 O THR A 445 N SER A 361 SHEET 1 AA3 2 GLU A 387 THR A 388 0 SHEET 2 AA3 2 GLN A 394 THR A 395 -1 O GLN A 394 N THR A 388 SHEET 1 AA4 6 PHE A 450 ASP A 451 0 SHEET 2 AA4 6 TYR A 472 ARG A 476 1 O ARG A 476 N PHE A 450 SHEET 3 AA4 6 ILE A 480 HIS A 485 -1 O PHE A 482 N ILE A 475 SHEET 4 AA4 6 LEU A 529 ILE A 532 1 O ALA A 531 N MET A 481 SHEET 5 AA4 6 ILE A 546 PHE A 548 1 O ILE A 546 N ILE A 532 SHEET 6 AA4 6 MET A 539 ALA A 541 -1 N TRP A 540 O GLY A 547 SHEET 1 AA5 2 VAL A 716 GLU A 721 0 SHEET 2 AA5 2 THR A 725 VAL A 730 -1 O TYR A 728 N THR A 718 SHEET 1 AA6 3 THR A 793 ALA A 797 0 SHEET 2 AA6 3 LYS A 800 GLN A 804 -1 O SER A 802 N GLU A 795 SHEET 3 AA6 3 THR A 831 GLU A 833 -1 O PHE A 832 N VAL A 801 SHEET 1 AA7 4 LEU A 823 SER A 827 0 SHEET 2 AA7 4 ALA A 811 GLU A 816 -1 N LEU A 814 O LEU A 824 SHEET 3 AA7 4 ALA A 843 VAL A 848 -1 O VAL A 848 N ALA A 811 SHEET 4 AA7 4 ARG A 854 LEU A 856 -1 O ILE A 855 N ALA A 847 LINK NE2 HIS A 574 ZN ZN A 901 1555 1555 2.14 LINK NE2 HIS A 578 ZN ZN A 901 1555 1555 2.07 LINK OE1 GLU A 591 ZN ZN A 901 1555 1555 2.05 LINK ZN ZN A 901 O2 EDO A 902 1555 1555 2.15 CISPEP 1 ARG A 521 PRO A 522 0 1.65 SITE 1 AC1 4 HIS A 574 HIS A 578 GLU A 591 EDO A 902 SITE 1 AC2 5 GLN A 575 HIS A 578 GLU A 591 ZN A 901 SITE 2 AC2 5 HOH A1119 SITE 1 AC3 3 HOH A1119 HOH A1186 HOH A1251 SITE 1 AC4 5 LYS A 349 HIS A 578 TYR A 723 EDO A 905 SITE 2 AC4 5 HOH A1062 SITE 1 AC5 5 ALA A 304 TYR A 723 EDO A 904 EDO A 906 SITE 2 AC5 5 HOH A1025 SITE 1 AC6 3 EDO A 905 HOH A1113 HOH A1164 CRYST1 81.957 81.957 182.138 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012202 0.007045 0.000000 0.00000 SCALE2 0.000000 0.014089 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005490 0.00000