data_5KDE # _entry.id 5KDE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5KDE pdb_00005kde 10.2210/pdb5kde/pdb WWPDB D_1000222061 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'Complex of the same enzyme with inorganic pyrophosphate' 4Z74 unspecified PDB . 5KDF unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5KDE _pdbx_database_status.recvd_initial_deposition_date 2016-06-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pang, A.H.' 1 'Garzan, A.' 2 'Garneau-Tsodikova, S.' 3 'Tsodikov, O.V.' 4 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'ACS Chem. Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1554-8937 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 11 _citation.language ? _citation.page_first 3084 _citation.page_last 3092 _citation.title 'Discovery of Allosteric and Selective Inhibitors of Inorganic Pyrophosphatase from Mycobacterium tuberculosis.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acschembio.6b00510 _citation.pdbx_database_id_PubMed 27622287 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pang, A.H.' 1 ? primary 'Garzan, A.' 2 ? primary 'Larsen, M.J.' 3 ? primary 'McQuade, T.J.' 4 ? primary 'Garneau-Tsodikova, S.' 5 ? primary 'Tsodikov, O.V.' 6 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 5KDE _cell.details ? _cell.formula_units_Z ? _cell.length_a 99.965 _cell.length_a_esd ? _cell.length_b 99.965 _cell.length_b_esd ? _cell.length_c 97.559 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KDE _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Inorganic pyrophosphatase' 19454.867 1 3.6.1.1 ? ? 'The expressed sequence includes a hexahistidine tag.' 2 non-polymer syn '2,4-bis(aziridin-1-yl)-6-(1-phenylpyrrol-2-yl)-1,3,5-triazine' 304.349 1 ? ? ? ? 3 non-polymer syn 'PYROPHOSPHATE 2-' 175.959 1 ? ? ? ? 4 water nat water 18.015 16 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Pyrophosphate phospho-hydrolase,PPase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MAHHHHHHAMQFDVTIEIPKGQRNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLLPQPVFPGVL VAARPVGMFRMVDEHGGDDKVLCVPAGDPRWDHVQDIGDVPAFELDAIKHFFVHYKDLEPGKFVKAADWVDRAEAEAEVQ RSVERFKAGTH ; _entity_poly.pdbx_seq_one_letter_code_can ;MAHHHHHHAMQFDVTIEIPKGQRNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLLPQPVFPGVL VAARPVGMFRMVDEHGGDDKVLCVPAGDPRWDHVQDIGDVPAFELDAIKHFFVHYKDLEPGKFVKAADWVDRAEAEAEVQ RSVERFKAGTH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 ALA n 1 10 MET n 1 11 GLN n 1 12 PHE n 1 13 ASP n 1 14 VAL n 1 15 THR n 1 16 ILE n 1 17 GLU n 1 18 ILE n 1 19 PRO n 1 20 LYS n 1 21 GLY n 1 22 GLN n 1 23 ARG n 1 24 ASN n 1 25 LYS n 1 26 TYR n 1 27 GLU n 1 28 VAL n 1 29 ASP n 1 30 HIS n 1 31 GLU n 1 32 THR n 1 33 GLY n 1 34 ARG n 1 35 VAL n 1 36 ARG n 1 37 LEU n 1 38 ASP n 1 39 ARG n 1 40 TYR n 1 41 LEU n 1 42 TYR n 1 43 THR n 1 44 PRO n 1 45 MET n 1 46 ALA n 1 47 TYR n 1 48 PRO n 1 49 THR n 1 50 ASP n 1 51 TYR n 1 52 GLY n 1 53 PHE n 1 54 ILE n 1 55 GLU n 1 56 ASP n 1 57 THR n 1 58 LEU n 1 59 GLY n 1 60 ASP n 1 61 ASP n 1 62 GLY n 1 63 ASP n 1 64 PRO n 1 65 LEU n 1 66 ASP n 1 67 ALA n 1 68 LEU n 1 69 VAL n 1 70 LEU n 1 71 LEU n 1 72 PRO n 1 73 GLN n 1 74 PRO n 1 75 VAL n 1 76 PHE n 1 77 PRO n 1 78 GLY n 1 79 VAL n 1 80 LEU n 1 81 VAL n 1 82 ALA n 1 83 ALA n 1 84 ARG n 1 85 PRO n 1 86 VAL n 1 87 GLY n 1 88 MET n 1 89 PHE n 1 90 ARG n 1 91 MET n 1 92 VAL n 1 93 ASP n 1 94 GLU n 1 95 HIS n 1 96 GLY n 1 97 GLY n 1 98 ASP n 1 99 ASP n 1 100 LYS n 1 101 VAL n 1 102 LEU n 1 103 CYS n 1 104 VAL n 1 105 PRO n 1 106 ALA n 1 107 GLY n 1 108 ASP n 1 109 PRO n 1 110 ARG n 1 111 TRP n 1 112 ASP n 1 113 HIS n 1 114 VAL n 1 115 GLN n 1 116 ASP n 1 117 ILE n 1 118 GLY n 1 119 ASP n 1 120 VAL n 1 121 PRO n 1 122 ALA n 1 123 PHE n 1 124 GLU n 1 125 LEU n 1 126 ASP n 1 127 ALA n 1 128 ILE n 1 129 LYS n 1 130 HIS n 1 131 PHE n 1 132 PHE n 1 133 VAL n 1 134 HIS n 1 135 TYR n 1 136 LYS n 1 137 ASP n 1 138 LEU n 1 139 GLU n 1 140 PRO n 1 141 GLY n 1 142 LYS n 1 143 PHE n 1 144 VAL n 1 145 LYS n 1 146 ALA n 1 147 ALA n 1 148 ASP n 1 149 TRP n 1 150 VAL n 1 151 ASP n 1 152 ARG n 1 153 ALA n 1 154 GLU n 1 155 ALA n 1 156 GLU n 1 157 ALA n 1 158 GLU n 1 159 VAL n 1 160 GLN n 1 161 ARG n 1 162 SER n 1 163 VAL n 1 164 GLU n 1 165 ARG n 1 166 PHE n 1 167 LYS n 1 168 ALA n 1 169 GLY n 1 170 THR n 1 171 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 171 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ppa, Rv3628, MTCY15C10.24' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 25618 / H37Rv' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83332 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code IPYR_MYCTU _struct_ref.pdbx_db_accession P9WI55 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MQFDVTIEIPKGQRNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLLPQPVFPGVLVAARPVGMF RMVDEHGGDDKVLCVPAGDPRWDHVQDIGDVPAFELDAIKHFFVHYKDLEPGKFVKAADWVDRAEAEAEVQRSVERFKAG TH ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5KDE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 10 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 171 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P9WI55 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 162 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 162 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5KDE MET A 1 ? UNP P9WI55 ? ? 'initiating methionine' -8 1 1 5KDE ALA A 2 ? UNP P9WI55 ? ? 'expression tag' -7 2 1 5KDE HIS A 3 ? UNP P9WI55 ? ? 'expression tag' -6 3 1 5KDE HIS A 4 ? UNP P9WI55 ? ? 'expression tag' -5 4 1 5KDE HIS A 5 ? UNP P9WI55 ? ? 'expression tag' -4 5 1 5KDE HIS A 6 ? UNP P9WI55 ? ? 'expression tag' -3 6 1 5KDE HIS A 7 ? UNP P9WI55 ? ? 'expression tag' -2 7 1 5KDE HIS A 8 ? UNP P9WI55 ? ? 'expression tag' -1 8 1 5KDE ALA A 9 ? UNP P9WI55 ? ? 'expression tag' 0 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 6RT non-polymer . '2,4-bis(aziridin-1-yl)-6-(1-phenylpyrrol-2-yl)-1,3,5-triazine' ? 'C17 H16 N6' 304.349 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 POP non-polymer . 'PYROPHOSPHATE 2-' ? 'H2 O7 P2 -2' 175.959 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5KDE _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.62 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 65.99 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M HEPES pH 7.5, 1.6 M NaH2PO4, and 0.2 M KH2PO4' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX300-HS' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-10-18 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5KDE _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.65 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8828 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 29 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.65 _reflns_shell.d_res_low 2.72 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 5 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.09 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 7.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 1.01 _refine.aniso_B[1][2] 0.51 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 1.01 _refine.aniso_B[2][3] -0.00 _refine.aniso_B[3][3] -3.28 _refine.B_iso_max ? _refine.B_iso_mean 57.261 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.942 _refine.correlation_coeff_Fo_to_Fc_free 0.923 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5KDE _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.65 _refine.ls_d_res_low 50 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8404 _refine.ls_number_reflns_R_free 424 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.59 _refine.ls_percent_reflns_R_free 4.8 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.20578 _refine.ls_R_factor_R_free 0.24015 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.20399 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4Z72 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.359 _refine.pdbx_overall_ESU_R_Free 0.257 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 9.639 _refine.overall_SU_ML 0.193 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 1282 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 16 _refine_hist.number_atoms_total 1330 _refine_hist.d_res_high 2.65 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 0.019 1348 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 1235 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.807 1.989 1837 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.075 3.000 2844 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 5.515 5.000 160 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 31.047 23.824 68 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 14.988 15.000 204 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 9.937 15.000 10 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.065 0.200 187 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 0.021 1530 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 309 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 1.225 5.697 643 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 1.225 5.692 642 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 2.237 8.543 803 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 2.237 8.543 803 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 0.987 5.889 704 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 0.982 5.856 697 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 1.840 8.688 1016 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 3.721 45.011 1383 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 3.722 44.938 1381 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.647 _refine_ls_shell.d_res_low 2.716 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 31 _refine_ls_shell.number_reflns_R_work 601 _refine_ls_shell.percent_reflns_obs 99.68 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.397 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.280 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5KDE _struct.title 'Inorganic pyrophosphatase from Mycobacterium tuberculosis in complex with inhibitor 1 and inorganic pyrophosphate' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5KDE _struct_keywords.text 'hydrolase, pyrophosphatase, drug target, HYDROLASE-HYDROLASE INHIBITOR complex' _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 108 ? ASP A 112 ? ASP A 99 ASP A 103 5 ? 5 HELX_P HELX_P2 AA2 ASP A 116 ? VAL A 120 ? ASP A 107 VAL A 111 5 ? 5 HELX_P HELX_P3 AA3 PRO A 121 ? TYR A 135 ? PRO A 112 TYR A 126 1 ? 15 HELX_P HELX_P4 AA4 ASP A 151 ? ALA A 168 ? ASP A 142 ALA A 159 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 144 ? VAL A 150 ? VAL A 135 VAL A 141 AA1 2 LEU A 80 ? ASP A 93 ? LEU A 71 ASP A 84 AA1 3 LYS A 100 ? PRO A 105 ? LYS A 91 PRO A 96 AA1 4 ASP A 66 ? VAL A 69 ? ASP A 57 VAL A 60 AA1 5 ASP A 50 ? ILE A 54 ? ASP A 41 ILE A 45 AA1 6 PHE A 12 ? ILE A 18 ? PHE A 3 ILE A 9 AA1 7 LEU A 80 ? ASP A 93 ? LEU A 71 ASP A 84 AA2 1 ASN A 24 ? VAL A 28 ? ASN A 15 VAL A 19 AA2 2 VAL A 35 ? TYR A 40 ? VAL A 26 TYR A 31 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ASP A 148 ? O ASP A 139 N ARG A 90 ? N ARG A 81 AA1 2 3 N PHE A 89 ? N PHE A 80 O LYS A 100 ? O LYS A 91 AA1 3 4 O CYS A 103 ? O CYS A 94 N LEU A 68 ? N LEU A 59 AA1 4 5 O ALA A 67 ? O ALA A 58 N GLY A 52 ? N GLY A 43 AA1 5 6 O TYR A 51 ? O TYR A 42 N ILE A 18 ? N ILE A 9 AA1 6 7 N PHE A 12 ? N PHE A 3 O ALA A 83 ? O ALA A 74 AA2 1 2 N GLU A 27 ? N GLU A 18 O ARG A 36 ? O ARG A 27 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 6RT 201 ? 6 'binding site for residue 6RT A 201' AC2 Software A POP 202 ? 9 'binding site for residue POP A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ARG A 110 ? ARG A 101 . ? 1_555 ? 2 AC1 6 TRP A 111 ? TRP A 102 . ? 1_555 ? 3 AC1 6 VAL A 114 ? VAL A 105 . ? 1_555 ? 4 AC1 6 ASP A 119 ? ASP A 110 . ? 1_555 ? 5 AC1 6 PRO A 121 ? PRO A 112 . ? 1_555 ? 6 AC1 6 PHE A 123 ? PHE A 114 . ? 12_537 ? 7 AC2 9 LYS A 25 ? LYS A 16 . ? 1_555 ? 8 AC2 9 ARG A 39 ? ARG A 30 . ? 1_555 ? 9 AC2 9 ASP A 93 ? ASP A 84 . ? 1_555 ? 10 AC2 9 GLU A 94 ? GLU A 85 . ? 1_555 ? 11 AC2 9 HIS A 95 ? HIS A 86 . ? 1_555 ? 12 AC2 9 ASP A 98 ? ASP A 89 . ? 1_555 ? 13 AC2 9 TYR A 135 ? TYR A 126 . ? 1_555 ? 14 AC2 9 LYS A 136 ? LYS A 127 . ? 1_555 ? 15 AC2 9 HOH D . ? HOH A 311 . ? 1_555 ? # _atom_sites.entry_id 5KDE _atom_sites.fract_transf_matrix[1][1] 0.010004 _atom_sites.fract_transf_matrix[1][2] 0.005776 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011551 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010250 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -8 ? ? ? A . n A 1 2 ALA 2 -7 ? ? ? A . n A 1 3 HIS 3 -6 ? ? ? A . n A 1 4 HIS 4 -5 ? ? ? A . n A 1 5 HIS 5 -4 ? ? ? A . n A 1 6 HIS 6 -3 ? ? ? A . n A 1 7 HIS 7 -2 ? ? ? A . n A 1 8 HIS 8 -1 ? ? ? A . n A 1 9 ALA 9 0 0 ALA ALA A . n A 1 10 MET 10 1 1 MET MET A . n A 1 11 GLN 11 2 2 GLN GLN A . n A 1 12 PHE 12 3 3 PHE PHE A . n A 1 13 ASP 13 4 4 ASP ASP A . n A 1 14 VAL 14 5 5 VAL VAL A . n A 1 15 THR 15 6 6 THR THR A . n A 1 16 ILE 16 7 7 ILE ILE A . n A 1 17 GLU 17 8 8 GLU GLU A . n A 1 18 ILE 18 9 9 ILE ILE A . n A 1 19 PRO 19 10 10 PRO PRO A . n A 1 20 LYS 20 11 11 LYS LYS A . n A 1 21 GLY 21 12 12 GLY GLY A . n A 1 22 GLN 22 13 13 GLN GLN A . n A 1 23 ARG 23 14 14 ARG ARG A . n A 1 24 ASN 24 15 15 ASN ASN A . n A 1 25 LYS 25 16 16 LYS LYS A . n A 1 26 TYR 26 17 17 TYR TYR A . n A 1 27 GLU 27 18 18 GLU GLU A . n A 1 28 VAL 28 19 19 VAL VAL A . n A 1 29 ASP 29 20 20 ASP ASP A . n A 1 30 HIS 30 21 21 HIS HIS A . n A 1 31 GLU 31 22 22 GLU GLU A . n A 1 32 THR 32 23 23 THR THR A . n A 1 33 GLY 33 24 24 GLY GLY A . n A 1 34 ARG 34 25 25 ARG ARG A . n A 1 35 VAL 35 26 26 VAL VAL A . n A 1 36 ARG 36 27 27 ARG ARG A . n A 1 37 LEU 37 28 28 LEU LEU A . n A 1 38 ASP 38 29 29 ASP ASP A . n A 1 39 ARG 39 30 30 ARG ARG A . n A 1 40 TYR 40 31 31 TYR TYR A . n A 1 41 LEU 41 32 32 LEU LEU A . n A 1 42 TYR 42 33 33 TYR TYR A . n A 1 43 THR 43 34 34 THR THR A . n A 1 44 PRO 44 35 35 PRO PRO A . n A 1 45 MET 45 36 36 MET MET A . n A 1 46 ALA 46 37 37 ALA ALA A . n A 1 47 TYR 47 38 38 TYR TYR A . n A 1 48 PRO 48 39 39 PRO PRO A . n A 1 49 THR 49 40 40 THR THR A . n A 1 50 ASP 50 41 41 ASP ASP A . n A 1 51 TYR 51 42 42 TYR TYR A . n A 1 52 GLY 52 43 43 GLY GLY A . n A 1 53 PHE 53 44 44 PHE PHE A . n A 1 54 ILE 54 45 45 ILE ILE A . n A 1 55 GLU 55 46 46 GLU GLU A . n A 1 56 ASP 56 47 47 ASP ASP A . n A 1 57 THR 57 48 48 THR THR A . n A 1 58 LEU 58 49 49 LEU LEU A . n A 1 59 GLY 59 50 50 GLY GLY A . n A 1 60 ASP 60 51 51 ASP ASP A . n A 1 61 ASP 61 52 52 ASP ASP A . n A 1 62 GLY 62 53 53 GLY GLY A . n A 1 63 ASP 63 54 54 ASP ASP A . n A 1 64 PRO 64 55 55 PRO PRO A . n A 1 65 LEU 65 56 56 LEU LEU A . n A 1 66 ASP 66 57 57 ASP ASP A . n A 1 67 ALA 67 58 58 ALA ALA A . n A 1 68 LEU 68 59 59 LEU LEU A . n A 1 69 VAL 69 60 60 VAL VAL A . n A 1 70 LEU 70 61 61 LEU LEU A . n A 1 71 LEU 71 62 62 LEU LEU A . n A 1 72 PRO 72 63 63 PRO PRO A . n A 1 73 GLN 73 64 64 GLN GLN A . n A 1 74 PRO 74 65 65 PRO PRO A . n A 1 75 VAL 75 66 66 VAL VAL A . n A 1 76 PHE 76 67 67 PHE PHE A . n A 1 77 PRO 77 68 68 PRO PRO A . n A 1 78 GLY 78 69 69 GLY GLY A . n A 1 79 VAL 79 70 70 VAL VAL A . n A 1 80 LEU 80 71 71 LEU LEU A . n A 1 81 VAL 81 72 72 VAL VAL A . n A 1 82 ALA 82 73 73 ALA ALA A . n A 1 83 ALA 83 74 74 ALA ALA A . n A 1 84 ARG 84 75 75 ARG ARG A . n A 1 85 PRO 85 76 76 PRO PRO A . n A 1 86 VAL 86 77 77 VAL VAL A . n A 1 87 GLY 87 78 78 GLY GLY A . n A 1 88 MET 88 79 79 MET MET A . n A 1 89 PHE 89 80 80 PHE PHE A . n A 1 90 ARG 90 81 81 ARG ARG A . n A 1 91 MET 91 82 82 MET MET A . n A 1 92 VAL 92 83 83 VAL VAL A . n A 1 93 ASP 93 84 84 ASP ASP A . n A 1 94 GLU 94 85 85 GLU GLU A . n A 1 95 HIS 95 86 86 HIS HIS A . n A 1 96 GLY 96 87 87 GLY GLY A . n A 1 97 GLY 97 88 88 GLY GLY A . n A 1 98 ASP 98 89 89 ASP ASP A . n A 1 99 ASP 99 90 90 ASP ASP A . n A 1 100 LYS 100 91 91 LYS LYS A . n A 1 101 VAL 101 92 92 VAL VAL A . n A 1 102 LEU 102 93 93 LEU LEU A . n A 1 103 CYS 103 94 94 CYS CYS A . n A 1 104 VAL 104 95 95 VAL VAL A . n A 1 105 PRO 105 96 96 PRO PRO A . n A 1 106 ALA 106 97 97 ALA ALA A . n A 1 107 GLY 107 98 98 GLY GLY A . n A 1 108 ASP 108 99 99 ASP ASP A . n A 1 109 PRO 109 100 100 PRO PRO A . n A 1 110 ARG 110 101 101 ARG ARG A . n A 1 111 TRP 111 102 102 TRP TRP A . n A 1 112 ASP 112 103 103 ASP ASP A . n A 1 113 HIS 113 104 104 HIS HIS A . n A 1 114 VAL 114 105 105 VAL VAL A . n A 1 115 GLN 115 106 106 GLN GLN A . n A 1 116 ASP 116 107 107 ASP ASP A . n A 1 117 ILE 117 108 108 ILE ILE A . n A 1 118 GLY 118 109 109 GLY GLY A . n A 1 119 ASP 119 110 110 ASP ASP A . n A 1 120 VAL 120 111 111 VAL VAL A . n A 1 121 PRO 121 112 112 PRO PRO A . n A 1 122 ALA 122 113 113 ALA ALA A . n A 1 123 PHE 123 114 114 PHE PHE A . n A 1 124 GLU 124 115 115 GLU GLU A . n A 1 125 LEU 125 116 116 LEU LEU A . n A 1 126 ASP 126 117 117 ASP ASP A . n A 1 127 ALA 127 118 118 ALA ALA A . n A 1 128 ILE 128 119 119 ILE ILE A . n A 1 129 LYS 129 120 120 LYS LYS A . n A 1 130 HIS 130 121 121 HIS HIS A . n A 1 131 PHE 131 122 122 PHE PHE A . n A 1 132 PHE 132 123 123 PHE PHE A . n A 1 133 VAL 133 124 124 VAL VAL A . n A 1 134 HIS 134 125 125 HIS HIS A . n A 1 135 TYR 135 126 126 TYR TYR A . n A 1 136 LYS 136 127 127 LYS LYS A . n A 1 137 ASP 137 128 128 ASP ASP A . n A 1 138 LEU 138 129 129 LEU LEU A . n A 1 139 GLU 139 130 130 GLU GLU A . n A 1 140 PRO 140 131 131 PRO PRO A . n A 1 141 GLY 141 132 132 GLY GLY A . n A 1 142 LYS 142 133 133 LYS LYS A . n A 1 143 PHE 143 134 134 PHE PHE A . n A 1 144 VAL 144 135 135 VAL VAL A . n A 1 145 LYS 145 136 136 LYS LYS A . n A 1 146 ALA 146 137 137 ALA ALA A . n A 1 147 ALA 147 138 138 ALA ALA A . n A 1 148 ASP 148 139 139 ASP ASP A . n A 1 149 TRP 149 140 140 TRP TRP A . n A 1 150 VAL 150 141 141 VAL VAL A . n A 1 151 ASP 151 142 142 ASP ASP A . n A 1 152 ARG 152 143 143 ARG ARG A . n A 1 153 ALA 153 144 144 ALA ALA A . n A 1 154 GLU 154 145 145 GLU GLU A . n A 1 155 ALA 155 146 146 ALA ALA A . n A 1 156 GLU 156 147 147 GLU GLU A . n A 1 157 ALA 157 148 148 ALA ALA A . n A 1 158 GLU 158 149 149 GLU GLU A . n A 1 159 VAL 159 150 150 VAL VAL A . n A 1 160 GLN 160 151 151 GLN GLN A . n A 1 161 ARG 161 152 152 ARG ARG A . n A 1 162 SER 162 153 153 SER SER A . n A 1 163 VAL 163 154 154 VAL VAL A . n A 1 164 GLU 164 155 155 GLU GLU A . n A 1 165 ARG 165 156 156 ARG ARG A . n A 1 166 PHE 166 157 157 PHE PHE A . n A 1 167 LYS 167 158 158 LYS LYS A . n A 1 168 ALA 168 159 159 ALA ALA A . n A 1 169 GLY 169 160 160 GLY GLY A . n A 1 170 THR 170 161 ? ? ? A . n A 1 171 HIS 171 162 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6RT 1 201 1 6RT MMI A . C 3 POP 1 202 1 POP POP A . D 4 HOH 1 301 9 HOH HOH A . D 4 HOH 2 302 14 HOH HOH A . D 4 HOH 3 303 7 HOH HOH A . D 4 HOH 4 304 5 HOH HOH A . D 4 HOH 5 305 4 HOH HOH A . D 4 HOH 6 306 8 HOH HOH A . D 4 HOH 7 307 15 HOH HOH A . D 4 HOH 8 308 3 HOH HOH A . D 4 HOH 9 309 9 HOH HOH A . D 4 HOH 10 310 11 HOH HOH A . D 4 HOH 11 311 20 HOH HOH A . D 4 HOH 12 312 15 HOH HOH A . D 4 HOH 13 313 10 HOH HOH A . D 4 HOH 14 314 21 HOH HOH A . D 4 HOH 15 315 4 HOH HOH A . D 4 HOH 16 316 19 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 15130 ? 1 MORE -57 ? 1 'SSA (A^2)' 37370 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_535 -y,x-y-2,z -0.5000000000 -0.8660254038 0.0000000000 99.9650000000 0.8660254038 -0.5000000000 0.0000000000 -173.1444589786 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_755 -x+y+2,-x,z -0.5000000000 0.8660254038 0.0000000000 199.9300000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 10_557 -y,-x,-z+5/2 0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 243.8975000000 5 'crystal symmetry operation' 11_757 -x+y+2,y,-z+5/2 -1.0000000000 0.0000000000 0.0000000000 199.9300000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 243.8975000000 6 'crystal symmetry operation' 12_537 x,x-y-2,-z+5/2 0.5000000000 0.8660254038 0.0000000000 99.9650000000 0.8660254038 -0.5000000000 0.0000000000 -173.1444589786 0.0000000000 0.0000000000 -1.0000000000 243.8975000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-09-28 2 'Structure model' 1 1 2016-12-21 3 'Structure model' 1 2 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0103 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 89 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -157.49 _pdbx_validate_torsion.psi 61.84 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -8 ? A MET 1 2 1 Y 1 A ALA -7 ? A ALA 2 3 1 Y 1 A HIS -6 ? A HIS 3 4 1 Y 1 A HIS -5 ? A HIS 4 5 1 Y 1 A HIS -4 ? A HIS 5 6 1 Y 1 A HIS -3 ? A HIS 6 7 1 Y 1 A HIS -2 ? A HIS 7 8 1 Y 1 A HIS -1 ? A HIS 8 9 1 Y 1 A THR 161 ? A THR 170 10 1 Y 1 A HIS 162 ? A HIS 171 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 6RT C11 C Y N 1 6RT C12 C N N 2 6RT C13 C N N 3 6RT C14 C Y N 4 6RT N1 N Y N 5 6RT C16 C N N 6 6RT C15 C N N 7 6RT N3 N Y N 8 6RT N4 N N N 9 6RT N5 N Y N 10 6RT N2 N N N 11 6RT C C Y N 12 6RT C1 C Y N 13 6RT N N Y N 14 6RT C4 C Y N 15 6RT C3 C Y N 16 6RT C2 C Y N 17 6RT C5 C Y N 18 6RT C10 C Y N 19 6RT C9 C Y N 20 6RT C8 C Y N 21 6RT C7 C Y N 22 6RT C6 C Y N 23 6RT H1 H N N 24 6RT H2 H N N 25 6RT H3 H N N 26 6RT H4 H N N 27 6RT H5 H N N 28 6RT H6 H N N 29 6RT H7 H N N 30 6RT H8 H N N 31 6RT H9 H N N 32 6RT H10 H N N 33 6RT H11 H N N 34 6RT H12 H N N 35 6RT H13 H N N 36 6RT H14 H N N 37 6RT H15 H N N 38 6RT H16 H N N 39 ALA N N N N 40 ALA CA C N S 41 ALA C C N N 42 ALA O O N N 43 ALA CB C N N 44 ALA OXT O N N 45 ALA H H N N 46 ALA H2 H N N 47 ALA HA H N N 48 ALA HB1 H N N 49 ALA HB2 H N N 50 ALA HB3 H N N 51 ALA HXT H N N 52 ARG N N N N 53 ARG CA C N S 54 ARG C C N N 55 ARG O O N N 56 ARG CB C N N 57 ARG CG C N N 58 ARG CD C N N 59 ARG NE N N N 60 ARG CZ C N N 61 ARG NH1 N N N 62 ARG NH2 N N N 63 ARG OXT O N N 64 ARG H H N N 65 ARG H2 H N N 66 ARG HA H N N 67 ARG HB2 H N N 68 ARG HB3 H N N 69 ARG HG2 H N N 70 ARG HG3 H N N 71 ARG HD2 H N N 72 ARG HD3 H N N 73 ARG HE H N N 74 ARG HH11 H N N 75 ARG HH12 H N N 76 ARG HH21 H N N 77 ARG HH22 H N N 78 ARG HXT H N N 79 ASN N N N N 80 ASN CA C N S 81 ASN C C N N 82 ASN O O N N 83 ASN CB C N N 84 ASN CG C N N 85 ASN OD1 O N N 86 ASN ND2 N N N 87 ASN OXT O N N 88 ASN H H N N 89 ASN H2 H N N 90 ASN HA H N N 91 ASN HB2 H N N 92 ASN HB3 H N N 93 ASN HD21 H N N 94 ASN HD22 H N N 95 ASN HXT H N N 96 ASP N N N N 97 ASP CA C N S 98 ASP C C N N 99 ASP O O N N 100 ASP CB C N N 101 ASP CG C N N 102 ASP OD1 O N N 103 ASP OD2 O N N 104 ASP OXT O N N 105 ASP H H N N 106 ASP H2 H N N 107 ASP HA H N N 108 ASP HB2 H N N 109 ASP HB3 H N N 110 ASP HD2 H N N 111 ASP HXT H N N 112 CYS N N N N 113 CYS CA C N R 114 CYS C C N N 115 CYS O O N N 116 CYS CB C N N 117 CYS SG S N N 118 CYS OXT O N N 119 CYS H H N N 120 CYS H2 H N N 121 CYS HA H N N 122 CYS HB2 H N N 123 CYS HB3 H N N 124 CYS HG H N N 125 CYS HXT H N N 126 GLN N N N N 127 GLN CA C N S 128 GLN C C N N 129 GLN O O N N 130 GLN CB C N N 131 GLN CG C N N 132 GLN CD C N N 133 GLN OE1 O N N 134 GLN NE2 N N N 135 GLN OXT O N N 136 GLN H H N N 137 GLN H2 H N N 138 GLN HA H N N 139 GLN HB2 H N N 140 GLN HB3 H N N 141 GLN HG2 H N N 142 GLN HG3 H N N 143 GLN HE21 H N N 144 GLN HE22 H N N 145 GLN HXT H N N 146 GLU N N N N 147 GLU CA C N S 148 GLU C C N N 149 GLU O O N N 150 GLU CB C N N 151 GLU CG C N N 152 GLU CD C N N 153 GLU OE1 O N N 154 GLU OE2 O N N 155 GLU OXT O N N 156 GLU H H N N 157 GLU H2 H N N 158 GLU HA H N N 159 GLU HB2 H N N 160 GLU HB3 H N N 161 GLU HG2 H N N 162 GLU HG3 H N N 163 GLU HE2 H N N 164 GLU HXT H N N 165 GLY N N N N 166 GLY CA C N N 167 GLY C C N N 168 GLY O O N N 169 GLY OXT O N N 170 GLY H H N N 171 GLY H2 H N N 172 GLY HA2 H N N 173 GLY HA3 H N N 174 GLY HXT H N N 175 HIS N N N N 176 HIS CA C N S 177 HIS C C N N 178 HIS O O N N 179 HIS CB C N N 180 HIS CG C Y N 181 HIS ND1 N Y N 182 HIS CD2 C Y N 183 HIS CE1 C Y N 184 HIS NE2 N Y N 185 HIS OXT O N N 186 HIS H H N N 187 HIS H2 H N N 188 HIS HA H N N 189 HIS HB2 H N N 190 HIS HB3 H N N 191 HIS HD1 H N N 192 HIS HD2 H N N 193 HIS HE1 H N N 194 HIS HE2 H N N 195 HIS HXT H N N 196 HOH O O N N 197 HOH H1 H N N 198 HOH H2 H N N 199 ILE N N N N 200 ILE CA C N S 201 ILE C C N N 202 ILE O O N N 203 ILE CB C N S 204 ILE CG1 C N N 205 ILE CG2 C N N 206 ILE CD1 C N N 207 ILE OXT O N N 208 ILE H H N N 209 ILE H2 H N N 210 ILE HA H N N 211 ILE HB H N N 212 ILE HG12 H N N 213 ILE HG13 H N N 214 ILE HG21 H N N 215 ILE HG22 H N N 216 ILE HG23 H N N 217 ILE HD11 H N N 218 ILE HD12 H N N 219 ILE HD13 H N N 220 ILE HXT H N N 221 LEU N N N N 222 LEU CA C N S 223 LEU C C N N 224 LEU O O N N 225 LEU CB C N N 226 LEU CG C N N 227 LEU CD1 C N N 228 LEU CD2 C N N 229 LEU OXT O N N 230 LEU H H N N 231 LEU H2 H N N 232 LEU HA H N N 233 LEU HB2 H N N 234 LEU HB3 H N N 235 LEU HG H N N 236 LEU HD11 H N N 237 LEU HD12 H N N 238 LEU HD13 H N N 239 LEU HD21 H N N 240 LEU HD22 H N N 241 LEU HD23 H N N 242 LEU HXT H N N 243 LYS N N N N 244 LYS CA C N S 245 LYS C C N N 246 LYS O O N N 247 LYS CB C N N 248 LYS CG C N N 249 LYS CD C N N 250 LYS CE C N N 251 LYS NZ N N N 252 LYS OXT O N N 253 LYS H H N N 254 LYS H2 H N N 255 LYS HA H N N 256 LYS HB2 H N N 257 LYS HB3 H N N 258 LYS HG2 H N N 259 LYS HG3 H N N 260 LYS HD2 H N N 261 LYS HD3 H N N 262 LYS HE2 H N N 263 LYS HE3 H N N 264 LYS HZ1 H N N 265 LYS HZ2 H N N 266 LYS HZ3 H N N 267 LYS HXT H N N 268 MET N N N N 269 MET CA C N S 270 MET C C N N 271 MET O O N N 272 MET CB C N N 273 MET CG C N N 274 MET SD S N N 275 MET CE C N N 276 MET OXT O N N 277 MET H H N N 278 MET H2 H N N 279 MET HA H N N 280 MET HB2 H N N 281 MET HB3 H N N 282 MET HG2 H N N 283 MET HG3 H N N 284 MET HE1 H N N 285 MET HE2 H N N 286 MET HE3 H N N 287 MET HXT H N N 288 PHE N N N N 289 PHE CA C N S 290 PHE C C N N 291 PHE O O N N 292 PHE CB C N N 293 PHE CG C Y N 294 PHE CD1 C Y N 295 PHE CD2 C Y N 296 PHE CE1 C Y N 297 PHE CE2 C Y N 298 PHE CZ C Y N 299 PHE OXT O N N 300 PHE H H N N 301 PHE H2 H N N 302 PHE HA H N N 303 PHE HB2 H N N 304 PHE HB3 H N N 305 PHE HD1 H N N 306 PHE HD2 H N N 307 PHE HE1 H N N 308 PHE HE2 H N N 309 PHE HZ H N N 310 PHE HXT H N N 311 POP P1 P N N 312 POP O1 O N N 313 POP O2 O N N 314 POP O3 O N N 315 POP O O N N 316 POP P2 P N N 317 POP O4 O N N 318 POP O5 O N N 319 POP O6 O N N 320 POP HO2 H N N 321 POP HO5 H N N 322 PRO N N N N 323 PRO CA C N S 324 PRO C C N N 325 PRO O O N N 326 PRO CB C N N 327 PRO CG C N N 328 PRO CD C N N 329 PRO OXT O N N 330 PRO H H N N 331 PRO HA H N N 332 PRO HB2 H N N 333 PRO HB3 H N N 334 PRO HG2 H N N 335 PRO HG3 H N N 336 PRO HD2 H N N 337 PRO HD3 H N N 338 PRO HXT H N N 339 SER N N N N 340 SER CA C N S 341 SER C C N N 342 SER O O N N 343 SER CB C N N 344 SER OG O N N 345 SER OXT O N N 346 SER H H N N 347 SER H2 H N N 348 SER HA H N N 349 SER HB2 H N N 350 SER HB3 H N N 351 SER HG H N N 352 SER HXT H N N 353 THR N N N N 354 THR CA C N S 355 THR C C N N 356 THR O O N N 357 THR CB C N R 358 THR OG1 O N N 359 THR CG2 C N N 360 THR OXT O N N 361 THR H H N N 362 THR H2 H N N 363 THR HA H N N 364 THR HB H N N 365 THR HG1 H N N 366 THR HG21 H N N 367 THR HG22 H N N 368 THR HG23 H N N 369 THR HXT H N N 370 TRP N N N N 371 TRP CA C N S 372 TRP C C N N 373 TRP O O N N 374 TRP CB C N N 375 TRP CG C Y N 376 TRP CD1 C Y N 377 TRP CD2 C Y N 378 TRP NE1 N Y N 379 TRP CE2 C Y N 380 TRP CE3 C Y N 381 TRP CZ2 C Y N 382 TRP CZ3 C Y N 383 TRP CH2 C Y N 384 TRP OXT O N N 385 TRP H H N N 386 TRP H2 H N N 387 TRP HA H N N 388 TRP HB2 H N N 389 TRP HB3 H N N 390 TRP HD1 H N N 391 TRP HE1 H N N 392 TRP HE3 H N N 393 TRP HZ2 H N N 394 TRP HZ3 H N N 395 TRP HH2 H N N 396 TRP HXT H N N 397 TYR N N N N 398 TYR CA C N S 399 TYR C C N N 400 TYR O O N N 401 TYR CB C N N 402 TYR CG C Y N 403 TYR CD1 C Y N 404 TYR CD2 C Y N 405 TYR CE1 C Y N 406 TYR CE2 C Y N 407 TYR CZ C Y N 408 TYR OH O N N 409 TYR OXT O N N 410 TYR H H N N 411 TYR H2 H N N 412 TYR HA H N N 413 TYR HB2 H N N 414 TYR HB3 H N N 415 TYR HD1 H N N 416 TYR HD2 H N N 417 TYR HE1 H N N 418 TYR HE2 H N N 419 TYR HH H N N 420 TYR HXT H N N 421 VAL N N N N 422 VAL CA C N S 423 VAL C C N N 424 VAL O O N N 425 VAL CB C N N 426 VAL CG1 C N N 427 VAL CG2 C N N 428 VAL OXT O N N 429 VAL H H N N 430 VAL H2 H N N 431 VAL HA H N N 432 VAL HB H N N 433 VAL HG11 H N N 434 VAL HG12 H N N 435 VAL HG13 H N N 436 VAL HG21 H N N 437 VAL HG22 H N N 438 VAL HG23 H N N 439 VAL HXT H N N 440 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6RT C12 N2 sing N N 1 6RT C12 C13 sing N N 2 6RT C16 N4 sing N N 3 6RT C16 C15 sing N N 4 6RT C9 C10 doub Y N 5 6RT C9 C8 sing Y N 6 6RT C10 C5 sing Y N 7 6RT N3 C14 doub Y N 8 6RT N3 C11 sing Y N 9 6RT N2 C11 sing N N 10 6RT N2 C13 sing N N 11 6RT N4 C14 sing N N 12 6RT N4 C15 sing N N 13 6RT C14 N5 sing Y N 14 6RT C11 N1 doub Y N 15 6RT C8 C7 doub Y N 16 6RT N5 C doub Y N 17 6RT N1 C sing Y N 18 6RT C C1 sing N N 19 6RT C5 N sing N N 20 6RT C5 C6 doub Y N 21 6RT C1 N sing Y N 22 6RT C1 C2 doub Y N 23 6RT N C4 sing Y N 24 6RT C7 C6 sing Y N 25 6RT C2 C3 sing Y N 26 6RT C4 C3 doub Y N 27 6RT C12 H1 sing N N 28 6RT C12 H2 sing N N 29 6RT C13 H3 sing N N 30 6RT C13 H4 sing N N 31 6RT C16 H5 sing N N 32 6RT C16 H6 sing N N 33 6RT C15 H7 sing N N 34 6RT C15 H8 sing N N 35 6RT C4 H9 sing N N 36 6RT C3 H10 sing N N 37 6RT C2 H11 sing N N 38 6RT C10 H12 sing N N 39 6RT C9 H13 sing N N 40 6RT C8 H14 sing N N 41 6RT C7 H15 sing N N 42 6RT C6 H16 sing N N 43 ALA N CA sing N N 44 ALA N H sing N N 45 ALA N H2 sing N N 46 ALA CA C sing N N 47 ALA CA CB sing N N 48 ALA CA HA sing N N 49 ALA C O doub N N 50 ALA C OXT sing N N 51 ALA CB HB1 sing N N 52 ALA CB HB2 sing N N 53 ALA CB HB3 sing N N 54 ALA OXT HXT sing N N 55 ARG N CA sing N N 56 ARG N H sing N N 57 ARG N H2 sing N N 58 ARG CA C sing N N 59 ARG CA CB sing N N 60 ARG CA HA sing N N 61 ARG C O doub N N 62 ARG C OXT sing N N 63 ARG CB CG sing N N 64 ARG CB HB2 sing N N 65 ARG CB HB3 sing N N 66 ARG CG CD sing N N 67 ARG CG HG2 sing N N 68 ARG CG HG3 sing N N 69 ARG CD NE sing N N 70 ARG CD HD2 sing N N 71 ARG CD HD3 sing N N 72 ARG NE CZ sing N N 73 ARG NE HE sing N N 74 ARG CZ NH1 sing N N 75 ARG CZ NH2 doub N N 76 ARG NH1 HH11 sing N N 77 ARG NH1 HH12 sing N N 78 ARG NH2 HH21 sing N N 79 ARG NH2 HH22 sing N N 80 ARG OXT HXT sing N N 81 ASN N CA sing N N 82 ASN N H sing N N 83 ASN N H2 sing N N 84 ASN CA C sing N N 85 ASN CA CB sing N N 86 ASN CA HA sing N N 87 ASN C O doub N N 88 ASN C OXT sing N N 89 ASN CB CG sing N N 90 ASN CB HB2 sing N N 91 ASN CB HB3 sing N N 92 ASN CG OD1 doub N N 93 ASN CG ND2 sing N N 94 ASN ND2 HD21 sing N N 95 ASN ND2 HD22 sing N N 96 ASN OXT HXT sing N N 97 ASP N CA sing N N 98 ASP N H sing N N 99 ASP N H2 sing N N 100 ASP CA C sing N N 101 ASP CA CB sing N N 102 ASP CA HA sing N N 103 ASP C O doub N N 104 ASP C OXT sing N N 105 ASP CB CG sing N N 106 ASP CB HB2 sing N N 107 ASP CB HB3 sing N N 108 ASP CG OD1 doub N N 109 ASP CG OD2 sing N N 110 ASP OD2 HD2 sing N N 111 ASP OXT HXT sing N N 112 CYS N CA sing N N 113 CYS N H sing N N 114 CYS N H2 sing N N 115 CYS CA C sing N N 116 CYS CA CB sing N N 117 CYS CA HA sing N N 118 CYS C O doub N N 119 CYS C OXT sing N N 120 CYS CB SG sing N N 121 CYS CB HB2 sing N N 122 CYS CB HB3 sing N N 123 CYS SG HG sing N N 124 CYS OXT HXT sing N N 125 GLN N CA sing N N 126 GLN N H sing N N 127 GLN N H2 sing N N 128 GLN CA C sing N N 129 GLN CA CB sing N N 130 GLN CA HA sing N N 131 GLN C O doub N N 132 GLN C OXT sing N N 133 GLN CB CG sing N N 134 GLN CB HB2 sing N N 135 GLN CB HB3 sing N N 136 GLN CG CD sing N N 137 GLN CG HG2 sing N N 138 GLN CG HG3 sing N N 139 GLN CD OE1 doub N N 140 GLN CD NE2 sing N N 141 GLN NE2 HE21 sing N N 142 GLN NE2 HE22 sing N N 143 GLN OXT HXT sing N N 144 GLU N CA sing N N 145 GLU N H sing N N 146 GLU N H2 sing N N 147 GLU CA C sing N N 148 GLU CA CB sing N N 149 GLU CA HA sing N N 150 GLU C O doub N N 151 GLU C OXT sing N N 152 GLU CB CG sing N N 153 GLU CB HB2 sing N N 154 GLU CB HB3 sing N N 155 GLU CG CD sing N N 156 GLU CG HG2 sing N N 157 GLU CG HG3 sing N N 158 GLU CD OE1 doub N N 159 GLU CD OE2 sing N N 160 GLU OE2 HE2 sing N N 161 GLU OXT HXT sing N N 162 GLY N CA sing N N 163 GLY N H sing N N 164 GLY N H2 sing N N 165 GLY CA C sing N N 166 GLY CA HA2 sing N N 167 GLY CA HA3 sing N N 168 GLY C O doub N N 169 GLY C OXT sing N N 170 GLY OXT HXT sing N N 171 HIS N CA sing N N 172 HIS N H sing N N 173 HIS N H2 sing N N 174 HIS CA C sing N N 175 HIS CA CB sing N N 176 HIS CA HA sing N N 177 HIS C O doub N N 178 HIS C OXT sing N N 179 HIS CB CG sing N N 180 HIS CB HB2 sing N N 181 HIS CB HB3 sing N N 182 HIS CG ND1 sing Y N 183 HIS CG CD2 doub Y N 184 HIS ND1 CE1 doub Y N 185 HIS ND1 HD1 sing N N 186 HIS CD2 NE2 sing Y N 187 HIS CD2 HD2 sing N N 188 HIS CE1 NE2 sing Y N 189 HIS CE1 HE1 sing N N 190 HIS NE2 HE2 sing N N 191 HIS OXT HXT sing N N 192 HOH O H1 sing N N 193 HOH O H2 sing N N 194 ILE N CA sing N N 195 ILE N H sing N N 196 ILE N H2 sing N N 197 ILE CA C sing N N 198 ILE CA CB sing N N 199 ILE CA HA sing N N 200 ILE C O doub N N 201 ILE C OXT sing N N 202 ILE CB CG1 sing N N 203 ILE CB CG2 sing N N 204 ILE CB HB sing N N 205 ILE CG1 CD1 sing N N 206 ILE CG1 HG12 sing N N 207 ILE CG1 HG13 sing N N 208 ILE CG2 HG21 sing N N 209 ILE CG2 HG22 sing N N 210 ILE CG2 HG23 sing N N 211 ILE CD1 HD11 sing N N 212 ILE CD1 HD12 sing N N 213 ILE CD1 HD13 sing N N 214 ILE OXT HXT sing N N 215 LEU N CA sing N N 216 LEU N H sing N N 217 LEU N H2 sing N N 218 LEU CA C sing N N 219 LEU CA CB sing N N 220 LEU CA HA sing N N 221 LEU C O doub N N 222 LEU C OXT sing N N 223 LEU CB CG sing N N 224 LEU CB HB2 sing N N 225 LEU CB HB3 sing N N 226 LEU CG CD1 sing N N 227 LEU CG CD2 sing N N 228 LEU CG HG sing N N 229 LEU CD1 HD11 sing N N 230 LEU CD1 HD12 sing N N 231 LEU CD1 HD13 sing N N 232 LEU CD2 HD21 sing N N 233 LEU CD2 HD22 sing N N 234 LEU CD2 HD23 sing N N 235 LEU OXT HXT sing N N 236 LYS N CA sing N N 237 LYS N H sing N N 238 LYS N H2 sing N N 239 LYS CA C sing N N 240 LYS CA CB sing N N 241 LYS CA HA sing N N 242 LYS C O doub N N 243 LYS C OXT sing N N 244 LYS CB CG sing N N 245 LYS CB HB2 sing N N 246 LYS CB HB3 sing N N 247 LYS CG CD sing N N 248 LYS CG HG2 sing N N 249 LYS CG HG3 sing N N 250 LYS CD CE sing N N 251 LYS CD HD2 sing N N 252 LYS CD HD3 sing N N 253 LYS CE NZ sing N N 254 LYS CE HE2 sing N N 255 LYS CE HE3 sing N N 256 LYS NZ HZ1 sing N N 257 LYS NZ HZ2 sing N N 258 LYS NZ HZ3 sing N N 259 LYS OXT HXT sing N N 260 MET N CA sing N N 261 MET N H sing N N 262 MET N H2 sing N N 263 MET CA C sing N N 264 MET CA CB sing N N 265 MET CA HA sing N N 266 MET C O doub N N 267 MET C OXT sing N N 268 MET CB CG sing N N 269 MET CB HB2 sing N N 270 MET CB HB3 sing N N 271 MET CG SD sing N N 272 MET CG HG2 sing N N 273 MET CG HG3 sing N N 274 MET SD CE sing N N 275 MET CE HE1 sing N N 276 MET CE HE2 sing N N 277 MET CE HE3 sing N N 278 MET OXT HXT sing N N 279 PHE N CA sing N N 280 PHE N H sing N N 281 PHE N H2 sing N N 282 PHE CA C sing N N 283 PHE CA CB sing N N 284 PHE CA HA sing N N 285 PHE C O doub N N 286 PHE C OXT sing N N 287 PHE CB CG sing N N 288 PHE CB HB2 sing N N 289 PHE CB HB3 sing N N 290 PHE CG CD1 doub Y N 291 PHE CG CD2 sing Y N 292 PHE CD1 CE1 sing Y N 293 PHE CD1 HD1 sing N N 294 PHE CD2 CE2 doub Y N 295 PHE CD2 HD2 sing N N 296 PHE CE1 CZ doub Y N 297 PHE CE1 HE1 sing N N 298 PHE CE2 CZ sing Y N 299 PHE CE2 HE2 sing N N 300 PHE CZ HZ sing N N 301 PHE OXT HXT sing N N 302 POP P1 O1 doub N N 303 POP P1 O2 sing N N 304 POP P1 O3 sing N N 305 POP P1 O sing N N 306 POP O2 HO2 sing N N 307 POP O P2 sing N N 308 POP P2 O4 doub N N 309 POP P2 O5 sing N N 310 POP P2 O6 sing N N 311 POP O5 HO5 sing N N 312 PRO N CA sing N N 313 PRO N CD sing N N 314 PRO N H sing N N 315 PRO CA C sing N N 316 PRO CA CB sing N N 317 PRO CA HA sing N N 318 PRO C O doub N N 319 PRO C OXT sing N N 320 PRO CB CG sing N N 321 PRO CB HB2 sing N N 322 PRO CB HB3 sing N N 323 PRO CG CD sing N N 324 PRO CG HG2 sing N N 325 PRO CG HG3 sing N N 326 PRO CD HD2 sing N N 327 PRO CD HD3 sing N N 328 PRO OXT HXT sing N N 329 SER N CA sing N N 330 SER N H sing N N 331 SER N H2 sing N N 332 SER CA C sing N N 333 SER CA CB sing N N 334 SER CA HA sing N N 335 SER C O doub N N 336 SER C OXT sing N N 337 SER CB OG sing N N 338 SER CB HB2 sing N N 339 SER CB HB3 sing N N 340 SER OG HG sing N N 341 SER OXT HXT sing N N 342 THR N CA sing N N 343 THR N H sing N N 344 THR N H2 sing N N 345 THR CA C sing N N 346 THR CA CB sing N N 347 THR CA HA sing N N 348 THR C O doub N N 349 THR C OXT sing N N 350 THR CB OG1 sing N N 351 THR CB CG2 sing N N 352 THR CB HB sing N N 353 THR OG1 HG1 sing N N 354 THR CG2 HG21 sing N N 355 THR CG2 HG22 sing N N 356 THR CG2 HG23 sing N N 357 THR OXT HXT sing N N 358 TRP N CA sing N N 359 TRP N H sing N N 360 TRP N H2 sing N N 361 TRP CA C sing N N 362 TRP CA CB sing N N 363 TRP CA HA sing N N 364 TRP C O doub N N 365 TRP C OXT sing N N 366 TRP CB CG sing N N 367 TRP CB HB2 sing N N 368 TRP CB HB3 sing N N 369 TRP CG CD1 doub Y N 370 TRP CG CD2 sing Y N 371 TRP CD1 NE1 sing Y N 372 TRP CD1 HD1 sing N N 373 TRP CD2 CE2 doub Y N 374 TRP CD2 CE3 sing Y N 375 TRP NE1 CE2 sing Y N 376 TRP NE1 HE1 sing N N 377 TRP CE2 CZ2 sing Y N 378 TRP CE3 CZ3 doub Y N 379 TRP CE3 HE3 sing N N 380 TRP CZ2 CH2 doub Y N 381 TRP CZ2 HZ2 sing N N 382 TRP CZ3 CH2 sing Y N 383 TRP CZ3 HZ3 sing N N 384 TRP CH2 HH2 sing N N 385 TRP OXT HXT sing N N 386 TYR N CA sing N N 387 TYR N H sing N N 388 TYR N H2 sing N N 389 TYR CA C sing N N 390 TYR CA CB sing N N 391 TYR CA HA sing N N 392 TYR C O doub N N 393 TYR C OXT sing N N 394 TYR CB CG sing N N 395 TYR CB HB2 sing N N 396 TYR CB HB3 sing N N 397 TYR CG CD1 doub Y N 398 TYR CG CD2 sing Y N 399 TYR CD1 CE1 sing Y N 400 TYR CD1 HD1 sing N N 401 TYR CD2 CE2 doub Y N 402 TYR CD2 HD2 sing N N 403 TYR CE1 CZ doub Y N 404 TYR CE1 HE1 sing N N 405 TYR CE2 CZ sing Y N 406 TYR CE2 HE2 sing N N 407 TYR CZ OH sing N N 408 TYR OH HH sing N N 409 TYR OXT HXT sing N N 410 VAL N CA sing N N 411 VAL N H sing N N 412 VAL N H2 sing N N 413 VAL CA C sing N N 414 VAL CA CB sing N N 415 VAL CA HA sing N N 416 VAL C O doub N N 417 VAL C OXT sing N N 418 VAL CB CG1 sing N N 419 VAL CB CG2 sing N N 420 VAL CB HB sing N N 421 VAL CG1 HG11 sing N N 422 VAL CG1 HG12 sing N N 423 VAL CG1 HG13 sing N N 424 VAL CG2 HG21 sing N N 425 VAL CG2 HG22 sing N N 426 VAL CG2 HG23 sing N N 427 VAL OXT HXT sing N N 428 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '2,4-bis(aziridin-1-yl)-6-(1-phenylpyrrol-2-yl)-1,3,5-triazine' 6RT 3 'PYROPHOSPHATE 2-' POP 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4Z72 _pdbx_initial_refinement_model.details ? #