HEADER HYDROLASE 08-JUN-16 5KDG TITLE CRYSTAL STRUCTURE OF SALMONELLA TYPHIMURIUM EFFECTOR GTGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GIFSY-2 PROPHAGE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 17-217; COMPND 5 SYNONYM: UNCHARACTERIZED PROTEIN,VIRULENCE PROTEIN; COMPND 6 EC: 3.4.22.2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 90371; SOURCE 4 GENE: SBOV09681, DD95_21385, ERS450001_01848, SEETMRM9437_5135, SOURCE 5 TJ44_09000; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET29A KEYWDS PAPAIN-LIKE FOLD, CYSTEINE PROTEASE, VIRULENCE FACTOR, STRUCTURAL KEYWDS 2 GENOMICS, MONTREAL-KINGSTON BACTERIAL STRUCTURAL GENOMICS KEYWDS 3 INITIATIVE, BSGI, PSI-BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.KOZLOV,C.XU,K.WONG,K.GEHRING,M.CYGLER,MONTREAL-KINGSTON BACTERIAL AUTHOR 2 STRUCTURAL GENOMICS INITIATIVE (BSGI) REVDAT 6 27-SEP-23 5KDG 1 REMARK REVDAT 5 08-JAN-20 5KDG 1 REMARK REVDAT 4 01-NOV-17 5KDG 1 REMARK REVDAT 3 20-SEP-17 5KDG 1 REMARK REVDAT 2 04-JAN-17 5KDG 1 JRNL REVDAT 1 16-NOV-16 5KDG 0 JRNL AUTH C.XU,G.KOZLOV,K.WONG,K.GEHRING,M.CYGLER JRNL TITL CRYSTAL STRUCTURE OF THE SALMONELLA TYPHIMURIUM EFFECTOR JRNL TITL 2 GTGE. JRNL REF PLOS ONE V. 11 66643 2016 JRNL REFN ESSN 1932-6203 JRNL PMID 27923041 JRNL DOI 10.1371/JOURNAL.PONE.0166643 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 26504 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1343 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1912 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1499 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 64 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.45000 REMARK 3 B22 (A**2) : 0.45000 REMARK 3 B33 (A**2) : -0.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.137 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1562 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2118 ; 1.009 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 232 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1184 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 746 ; 0.914 ; 2.043 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 930 ; 1.540 ; 3.053 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 816 ; 1.380 ; 2.281 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1885 ; 6.015 ;21.436 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 31 REMARK 3 ORIGIN FOR THE GROUP (A): -19.0840 -17.7858 21.0475 REMARK 3 T TENSOR REMARK 3 T11: 0.1669 T22: 0.2607 REMARK 3 T33: 0.2157 T12: 0.1211 REMARK 3 T13: -0.0637 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 4.1772 L22: 4.0114 REMARK 3 L33: 12.5813 L12: 2.9190 REMARK 3 L13: -2.3517 L23: 0.9485 REMARK 3 S TENSOR REMARK 3 S11: 0.0616 S12: -0.7525 S13: -0.1146 REMARK 3 S21: 0.5550 S22: -0.2057 S23: -0.4986 REMARK 3 S31: 0.6114 S32: 0.7928 S33: 0.1442 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 64 REMARK 3 ORIGIN FOR THE GROUP (A): -21.6971 -27.2422 -9.9654 REMARK 3 T TENSOR REMARK 3 T11: 0.0937 T22: 0.0766 REMARK 3 T33: 0.1554 T12: -0.0034 REMARK 3 T13: 0.0071 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 2.3352 L22: 2.9147 REMARK 3 L33: 8.0027 L12: 0.1016 REMARK 3 L13: 0.7749 L23: 1.8406 REMARK 3 S TENSOR REMARK 3 S11: 0.0333 S12: 0.0191 S13: -0.1360 REMARK 3 S21: -0.1771 S22: -0.1355 S23: 0.3757 REMARK 3 S31: 0.2682 S32: -0.6892 S33: 0.1023 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 65 A 83 REMARK 3 ORIGIN FOR THE GROUP (A): -23.7175 -31.3026 0.8290 REMARK 3 T TENSOR REMARK 3 T11: 0.1608 T22: 0.0494 REMARK 3 T33: 0.1158 T12: -0.0428 REMARK 3 T13: 0.0732 T23: -0.0415 REMARK 3 L TENSOR REMARK 3 L11: 5.0447 L22: 4.9695 REMARK 3 L33: 5.1219 L12: -2.2556 REMARK 3 L13: -2.5628 L23: -0.3492 REMARK 3 S TENSOR REMARK 3 S11: -0.1746 S12: 0.2957 S13: -0.5773 REMARK 3 S21: 0.3543 S22: -0.1055 S23: 0.5201 REMARK 3 S31: 0.2709 S32: -0.0537 S33: 0.2801 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 84 A 96 REMARK 3 ORIGIN FOR THE GROUP (A): -15.6407 -37.6373 -7.9041 REMARK 3 T TENSOR REMARK 3 T11: 0.1781 T22: 0.0736 REMARK 3 T33: 0.1147 T12: 0.0213 REMARK 3 T13: 0.0281 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 4.1323 L22: 6.1197 REMARK 3 L33: 8.3976 L12: 3.1447 REMARK 3 L13: 2.8847 L23: 2.8890 REMARK 3 S TENSOR REMARK 3 S11: -0.0284 S12: -0.3178 S13: -0.1060 REMARK 3 S21: 0.3059 S22: -0.0653 S23: -0.2797 REMARK 3 S31: 0.4762 S32: 0.2574 S33: 0.0937 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 97 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): -4.2168 -21.5406 -14.1351 REMARK 3 T TENSOR REMARK 3 T11: 0.1008 T22: 0.0973 REMARK 3 T33: 0.0979 T12: 0.0100 REMARK 3 T13: 0.0185 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 1.6517 L22: 1.3601 REMARK 3 L33: 2.5692 L12: 0.2058 REMARK 3 L13: -0.1040 L23: 0.2994 REMARK 3 S TENSOR REMARK 3 S11: -0.0532 S12: -0.0066 S13: -0.0093 REMARK 3 S21: -0.1447 S22: 0.0577 S23: -0.1531 REMARK 3 S31: -0.0360 S32: 0.3975 S33: -0.0045 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 196 A 200 REMARK 3 ORIGIN FOR THE GROUP (A): -1.6776 -32.0995 0.9185 REMARK 3 T TENSOR REMARK 3 T11: 0.1172 T22: 0.2967 REMARK 3 T33: 0.5422 T12: 0.0092 REMARK 3 T13: -0.0492 T23: 0.0583 REMARK 3 L TENSOR REMARK 3 L11: 12.0482 L22: 16.8763 REMARK 3 L33: 23.5552 L12: 7.5170 REMARK 3 L13: 10.8935 L23: 19.7187 REMARK 3 S TENSOR REMARK 3 S11: -0.0700 S12: -0.5458 S13: 0.0919 REMARK 3 S21: 0.5309 S22: -0.1423 S23: 0.2195 REMARK 3 S31: 0.5504 S32: -0.2866 S33: 0.2123 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 201 A 213 REMARK 3 ORIGIN FOR THE GROUP (A): -12.1219 -32.4887 -16.6736 REMARK 3 T TENSOR REMARK 3 T11: 0.1540 T22: 0.0248 REMARK 3 T33: 0.1091 T12: 0.0207 REMARK 3 T13: 0.0309 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 4.1013 L22: 2.9387 REMARK 3 L33: 7.4040 L12: 0.7687 REMARK 3 L13: 2.0709 L23: 0.8331 REMARK 3 S TENSOR REMARK 3 S11: -0.0070 S12: -0.0185 S13: -0.2043 REMARK 3 S21: -0.0987 S22: 0.0274 S23: -0.0181 REMARK 3 S31: 0.4275 S32: -0.0269 S33: -0.0204 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 214 A 220 REMARK 3 ORIGIN FOR THE GROUP (A): -17.4830 -22.9159 -39.5607 REMARK 3 T TENSOR REMARK 3 T11: 0.6638 T22: 0.0810 REMARK 3 T33: 0.3092 T12: 0.1927 REMARK 3 T13: -0.0759 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 1.9056 L22: 16.1485 REMARK 3 L33: 28.7150 L12: 3.1465 REMARK 3 L13: -2.9744 L23: -20.6233 REMARK 3 S TENSOR REMARK 3 S11: 0.2115 S12: 0.0515 S13: 0.5981 REMARK 3 S21: 0.3834 S22: 0.4994 S23: 1.0199 REMARK 3 S31: -1.3569 S32: -0.9460 S33: -0.7109 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KDG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222023. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.6362 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26504 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 57.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04200 REMARK 200 FOR THE DATA SET : 37.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.68400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4MI7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULFATE, 0.1 M BIS-TRIS REMARK 280 (PH 5.5) AND 20% (W/V) GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.10300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.15100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.15100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 93.15450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.15100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.15100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.05150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.15100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.15100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 93.15450 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.15100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.15100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.05150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.10300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER AS DETERMINED BY SIZE-EXCLUSION CHROMATOGRAPHY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -142.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 16 REMARK 465 THR A 17 REMARK 465 ALA A 18 REMARK 465 THR A 19 REMARK 465 PRO A 20 REMARK 465 ASP A 66 REMARK 465 ILE A 67 REMARK 465 THR A 68 REMARK 465 SER A 69 REMARK 465 ASP A 70 REMARK 465 ASN A 71 REMARK 465 HIS A 221 REMARK 465 HIS A 222 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 65 CG CD OE1 OE2 REMARK 470 GLN A 72 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 147 70.98 54.60 REMARK 500 ASN A 197 -147.77 -138.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 305 DBREF 5KDG A 17 214 UNP Q9XC73 Q9XC73_SALTM 17 214 SEQADV 5KDG MET A 16 UNP Q9XC73 INITIATING METHIONINE SEQADV 5KDG A UNP Q9XC73 GLN 33 DELETION SEQADV 5KDG A UNP Q9XC73 PHE 34 DELETION SEQADV 5KDG A UNP Q9XC73 ASP 35 DELETION SEQADV 5KDG A UNP Q9XC73 THR 36 DELETION SEQADV 5KDG A UNP Q9XC73 THR 37 DELETION SEQADV 5KDG A UNP Q9XC73 GLY 38 DELETION SEQADV 5KDG A UNP Q9XC73 ASN 39 DELETION SEQADV 5KDG A UNP Q9XC73 THR 40 DELETION SEQADV 5KDG SER A 45 UNP Q9XC73 CYS 45 ENGINEERED MUTATION SEQADV 5KDG ASN A 123 UNP Q9XC73 ASP 123 ENGINEERED MUTATION SEQADV 5KDG LEU A 215 UNP Q9XC73 EXPRESSION TAG SEQADV 5KDG GLU A 216 UNP Q9XC73 EXPRESSION TAG SEQADV 5KDG HIS A 217 UNP Q9XC73 EXPRESSION TAG SEQADV 5KDG HIS A 218 UNP Q9XC73 EXPRESSION TAG SEQADV 5KDG HIS A 219 UNP Q9XC73 EXPRESSION TAG SEQADV 5KDG HIS A 220 UNP Q9XC73 EXPRESSION TAG SEQADV 5KDG HIS A 221 UNP Q9XC73 EXPRESSION TAG SEQADV 5KDG HIS A 222 UNP Q9XC73 EXPRESSION TAG SEQRES 1 A 199 MET THR ALA THR PRO GLN GLY GLN ILE ILE HIS HIS ARG SEQRES 2 A 199 ASN PHE GLN SER LEU TYR ASN ASN SER TRP VAL CYS SER SEQRES 3 A 199 LEU ASN VAL ILE LYS SER ARG ASP GLY ASN ASN TYR SER SEQRES 4 A 199 ALA LEU GLU ASP ILE THR SER ASP ASN GLN ALA PHE ASN SEQRES 5 A 199 ASN ILE LEU GLU GLY ILE ASP ILE ILE GLU CYS GLU ASN SEQRES 6 A 199 LEU LEU LYS GLU MET ASN VAL GLN LYS ILE PRO GLU SER SEQRES 7 A 199 SER LEU PHE THR ASN ILE LYS GLU ALA LEU GLN ALA GLU SEQRES 8 A 199 VAL PHE ASN SER THR VAL GLU ASP ASN PHE GLU SER PHE SEQRES 9 A 199 ILE SER TYR GLU LEU GLN ASN HIS GLY PRO LEU MET LEU SEQRES 10 A 199 ILE ARG PRO SER LEU GLY SER GLU CYS LEU HIS ALA GLU SEQRES 11 A 199 CYS ILE VAL GLY TYR ASP SER GLU VAL LYS LYS VAL LEU SEQRES 12 A 199 ILE TYR ASP SER MET ASN THR SER PRO GLU TRP GLN SER SEQRES 13 A 199 ASN ILE ASP VAL TYR ASP LYS LEU THR LEU ALA PHE ASN SEQRES 14 A 199 ASP LYS TYR LYS ASN GLU ASP CYS SER ILE CYS GLY LEU SEQRES 15 A 199 TYR TYR ASP GLY VAL TYR GLU PRO LYS LEU GLU HIS HIS SEQRES 16 A 199 HIS HIS HIS HIS HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET GOL A 305 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 4(O4 S 2-) FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *64(H2 O) HELIX 1 AA1 SER A 32 ASN A 43 5 4 HELIX 2 AA2 ASN A 44 SER A 55 1 12 HELIX 3 AA3 ASP A 82 GLU A 85 5 4 HELIX 4 AA4 CYS A 86 MET A 93 1 8 HELIX 5 AA5 SER A 101 GLU A 114 1 14 HELIX 6 AA6 ASN A 117 HIS A 135 1 19 HELIX 7 AA7 ASN A 180 ASN A 192 1 13 HELIX 8 AA8 ASP A 193 LYS A 196 5 4 HELIX 9 AA9 ASN A 197 CYS A 203 5 7 SHEET 1 AA1 6 VAL A 95 LYS A 97 0 SHEET 2 AA1 6 GLY A 204 ASP A 208 -1 O TYR A 207 N GLN A 96 SHEET 3 AA1 6 LEU A 138 PRO A 143 -1 N MET A 139 O TYR A 206 SHEET 4 AA1 6 LEU A 150 ASP A 159 -1 O GLU A 153 N LEU A 140 SHEET 5 AA1 6 LYS A 164 TYR A 168 -1 O LEU A 166 N VAL A 156 SHEET 6 AA1 6 GLU A 176 SER A 179 -1 O GLN A 178 N VAL A 165 SITE 1 AC1 5 TYR A 42 ARG A 142 SER A 144 LEU A 145 SITE 2 AC1 5 HIS A 151 SITE 1 AC2 6 LYS A 54 TYR A 61 MET A 93 ASN A 94 SITE 2 AC2 6 LYS A 164 VAL A 210 SITE 1 AC3 3 HIS A 218 HIS A 219 HIS A 220 SITE 1 AC4 5 ARG A 56 VAL A 210 TYR A 211 GLU A 212 SITE 2 AC4 5 HOH A 449 SITE 1 AC5 6 HIS A 26 HIS A 27 ARG A 28 ARG A 56 SITE 2 AC5 6 ASP A 57 TYR A 211 CRYST1 64.302 64.302 124.206 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015552 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015552 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008051 0.00000