HEADER LIPID TRANSPORT 08-JUN-16 5KDI TITLE HOW FAPP2 SELECTS SIMPLE GLYCOSPHINGOLIPIDS USING THE GLTP-FOLD COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY A MEMBER 8; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PH DOMAIN-CONTAINING FAMILY A MEMBER 8,PHOSPHATIDYLINOSITOL- COMPND 5 FOUR-PHOSPHATE ADAPTER PROTEIN 2,HFAPP2,SEROLOGICALLY DEFINED BREAST COMPND 6 CANCER ANTIGEN NY-BR-86, FAPP2-GLTPH DOMAIN; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLEKHA8, FAPP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLTP-FOLD, LIPID TRANSFER, LIPID TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR B.OCHOA-LIZARRALDE,A.N.POPOV,V.R.SAMYGINA,D.J.PATEL,R.E.BROWN, AUTHOR 2 L.MALININA REVDAT 4 27-SEP-23 5KDI 1 REMARK REVDAT 3 25-DEC-19 5KDI 1 REMARK REVDAT 2 13-NOV-19 5KDI 1 JRNL REVDAT 1 13-DEC-17 5KDI 0 JRNL AUTH B.OCHOA-LIZARRALDE,Y.G.GAO,A.N.POPOV,V.R.SAMYGINA,X.ZHAI, JRNL AUTH 2 S.K.MISHRA,I.A.BOLDYREV,J.G.MOLOTKOVSKY,D.K.SIMANSHU, JRNL AUTH 3 D.J.PATEL,R.E.BROWN,L.MALININA JRNL TITL STRUCTURAL ANALYSES OF 4-PHOSPHATE ADAPTOR PROTEIN 2 YIELD JRNL TITL 2 MECHANISTIC INSIGHTS INTO SPHINGOLIPID RECOGNITION BY THE JRNL TITL 3 GLYCOLIPID TRANSFER PROTEIN FAMILY. JRNL REF J.BIOL.CHEM. V. 293 16709 2018 JRNL REFN ESSN 1083-351X JRNL PMID 30206120 JRNL DOI 10.1074/JBC.RA117.000733 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 78300 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.133 REMARK 3 R VALUE (WORKING SET) : 0.131 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4122 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5408 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 270 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3310 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 102 REMARK 3 SOLVENT ATOMS : 493 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : -0.80000 REMARK 3 B33 (A**2) : 1.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.060 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.320 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3644 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2539 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4936 ; 1.768 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6294 ; 1.128 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 439 ; 4.713 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;33.500 ;25.065 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 676 ;13.647 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;21.512 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 597 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3852 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 688 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6183 ; 5.095 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 130 ;48.049 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6472 ;18.857 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5KDI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000221885. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97242 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78300 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.75400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2EUK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13-15% PEG8000, 0.1M MES PH 6.5, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 299K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.12050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.79600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.30350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.79600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.12050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.30350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N PRO A 309 O HOH A 701 1.92 REMARK 500 OD1 ASN A 399 O HOH A 702 2.05 REMARK 500 NE2 GLN B 396 O HOH B 701 2.06 REMARK 500 O HOH A 877 O HOH A 929 2.15 REMARK 500 O HOH A 748 O HOH B 720 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 316 -5.00 71.75 REMARK 500 ASN A 375 77.07 -166.92 REMARK 500 THR A 440 -89.12 -125.49 REMARK 500 ASN B 316 -0.22 71.44 REMARK 500 ASN B 375 77.35 -167.99 REMARK 500 THR B 440 -91.63 -130.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 958 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 959 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH B 934 DISTANCE = 6.02 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6S8 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6S8 B 601 DBREF 5KDI A 309 519 UNP Q96JA3 PKHA8_HUMAN 309 519 DBREF 5KDI B 309 519 UNP Q96JA3 PKHA8_HUMAN 309 519 SEQADV 5KDI ALA A 377 UNP Q96JA3 GLU 377 ENGINEERED MUTATION SEQADV 5KDI LYS A 378 UNP Q96JA3 GLU 378 ENGINEERED MUTATION SEQADV 5KDI ALA B 377 UNP Q96JA3 GLU 377 ENGINEERED MUTATION SEQADV 5KDI LYS B 378 UNP Q96JA3 GLU 378 ENGINEERED MUTATION SEQRES 1 A 211 PRO THR PHE PHE SER THR MET ASN THR SER PHE SER ASP SEQRES 2 A 211 ILE GLU LEU LEU GLU ASP SER GLY ILE PRO THR GLU ALA SEQRES 3 A 211 PHE LEU ALA SER CYS TYR ALA VAL VAL PRO VAL LEU ASP SEQRES 4 A 211 LYS LEU GLY PRO THR VAL PHE ALA PRO VAL LYS MET ASP SEQRES 5 A 211 LEU VAL GLY ASN ILE LYS LYS VAL ASN GLN LYS TYR ILE SEQRES 6 A 211 THR ASN LYS ALA LYS PHE THR THR LEU GLN LYS ILE VAL SEQRES 7 A 211 LEU HIS GLU VAL GLU ALA ASP VAL ALA GLN VAL ARG ASN SEQRES 8 A 211 SER ALA THR GLU ALA LEU LEU TRP LEU LYS ARG GLY LEU SEQRES 9 A 211 LYS PHE LEU LYS GLY PHE LEU THR GLU VAL LYS ASN GLY SEQRES 10 A 211 GLU LYS ASP ILE GLN THR ALA LEU ASN ASN ALA TYR GLY SEQRES 11 A 211 LYS THR LEU ARG GLN HIS HIS GLY TRP VAL VAL ARG GLY SEQRES 12 A 211 VAL PHE ALA LEU ALA LEU ARG ALA ALA PRO SER TYR GLU SEQRES 13 A 211 ASP PHE VAL ALA ALA LEU THR VAL LYS GLU GLY ASP HIS SEQRES 14 A 211 GLN LYS GLU ALA PHE SER ILE GLY MET GLN ARG ASP LEU SEQRES 15 A 211 SER LEU TYR LEU PRO ALA MET GLU LYS GLN LEU ALA ILE SEQRES 16 A 211 LEU ASP THR LEU TYR GLU VAL HIS GLY LEU GLU SER ASP SEQRES 17 A 211 GLU VAL VAL SEQRES 1 B 211 PRO THR PHE PHE SER THR MET ASN THR SER PHE SER ASP SEQRES 2 B 211 ILE GLU LEU LEU GLU ASP SER GLY ILE PRO THR GLU ALA SEQRES 3 B 211 PHE LEU ALA SER CYS TYR ALA VAL VAL PRO VAL LEU ASP SEQRES 4 B 211 LYS LEU GLY PRO THR VAL PHE ALA PRO VAL LYS MET ASP SEQRES 5 B 211 LEU VAL GLY ASN ILE LYS LYS VAL ASN GLN LYS TYR ILE SEQRES 6 B 211 THR ASN LYS ALA LYS PHE THR THR LEU GLN LYS ILE VAL SEQRES 7 B 211 LEU HIS GLU VAL GLU ALA ASP VAL ALA GLN VAL ARG ASN SEQRES 8 B 211 SER ALA THR GLU ALA LEU LEU TRP LEU LYS ARG GLY LEU SEQRES 9 B 211 LYS PHE LEU LYS GLY PHE LEU THR GLU VAL LYS ASN GLY SEQRES 10 B 211 GLU LYS ASP ILE GLN THR ALA LEU ASN ASN ALA TYR GLY SEQRES 11 B 211 LYS THR LEU ARG GLN HIS HIS GLY TRP VAL VAL ARG GLY SEQRES 12 B 211 VAL PHE ALA LEU ALA LEU ARG ALA ALA PRO SER TYR GLU SEQRES 13 B 211 ASP PHE VAL ALA ALA LEU THR VAL LYS GLU GLY ASP HIS SEQRES 14 B 211 GLN LYS GLU ALA PHE SER ILE GLY MET GLN ARG ASP LEU SEQRES 15 B 211 SER LEU TYR LEU PRO ALA MET GLU LYS GLN LEU ALA ILE SEQRES 16 B 211 LEU ASP THR LEU TYR GLU VAL HIS GLY LEU GLU SER ASP SEQRES 17 B 211 GLU VAL VAL HET 6S8 A 601 51 HET 6S8 B 601 51 HETNAM 6S8 (~{Z})-~{N}-[(~{E},2~{S},3~{R})-1-[(2~{R},3~{R},4~{S}, HETNAM 2 6S8 5~{R},6~{R})-6-(HYDROXYMETHYL)-3,4,5-TRIS(OXIDANYL) HETNAM 3 6S8 OXAN-2-YL]OXY-3-OXIDANYL-OCTADEC-4-EN-2-YL]OCTADEC-9- HETNAM 4 6S8 ENAMIDE HETSYN 6S8 N-(9Z-OCTADECENOYL)-1-BETA-GALACTOSYL-SPHING-4-ENINE FORMUL 3 6S8 2(C42 H79 N O8) FORMUL 5 HOH *493(H2 O) HELIX 1 AA1 THR A 310 THR A 314 5 5 HELIX 2 AA2 SER A 318 ILE A 322 5 5 HELIX 3 AA3 LEU A 325 GLY A 329 5 5 HELIX 4 AA4 PRO A 331 ALA A 341 1 11 HELIX 5 AA5 VAL A 342 GLY A 350 1 9 HELIX 6 AA6 PHE A 354 ILE A 373 1 20 HELIX 7 AA7 THR A 381 ALA A 392 1 12 HELIX 8 AA8 SER A 400 ASN A 424 1 25 HELIX 9 AA9 ASP A 428 THR A 440 1 13 HELIX 10 AB1 LEU A 441 HIS A 445 5 5 HELIX 11 AB2 GLY A 446 ALA A 459 1 14 HELIX 12 AB3 SER A 462 ALA A 469 1 8 HELIX 13 AB4 GLY A 475 GLN A 478 5 4 HELIX 14 AB5 LYS A 479 HIS A 511 1 33 HELIX 15 AB6 THR B 310 THR B 314 5 5 HELIX 16 AB7 SER B 318 ILE B 322 5 5 HELIX 17 AB8 LEU B 325 GLY B 329 5 5 HELIX 18 AB9 PRO B 331 VAL B 342 1 12 HELIX 19 AC1 VAL B 342 GLY B 350 1 9 HELIX 20 AC2 PHE B 354 ILE B 373 1 20 HELIX 21 AC3 THR B 381 ALA B 392 1 12 HELIX 22 AC4 SER B 400 ASN B 424 1 25 HELIX 23 AC5 ASP B 428 THR B 440 1 13 HELIX 24 AC6 LEU B 441 HIS B 445 5 5 HELIX 25 AC7 GLY B 446 ARG B 458 1 13 HELIX 26 AC8 SER B 462 THR B 471 1 10 HELIX 27 AC9 VAL B 472 ASP B 476 5 5 HELIX 28 AD1 GLN B 478 GLU B 480 5 3 HELIX 29 AD2 ALA B 481 HIS B 511 1 31 SITE 1 AC1 17 PHE A 311 PHE A 312 VAL A 357 ASP A 360 SITE 2 AC1 17 ASN A 364 LYS A 367 GLU A 403 TRP A 407 SITE 3 AC1 17 GLY A 411 PHE A 414 LEU A 441 HIS A 445 SITE 4 AC1 17 VAL A 452 VAL A 519 HOH A 716 HOH A 735 SITE 5 AC1 17 HOH A 781 SITE 1 AC2 19 ASN A 399 HOH A 702 HOH A 735 VAL B 353 SITE 2 AC2 19 VAL B 357 ASP B 360 ASN B 364 LYS B 367 SITE 3 AC2 19 GLU B 403 TRP B 407 HIS B 445 VAL B 452 SITE 4 AC2 19 PHE B 453 ALA B 456 VAL B 519 HOH B 717 SITE 5 AC2 19 HOH B 731 HOH B 738 HOH B 848 CRYST1 66.241 74.607 93.592 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015096 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013404 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010685 0.00000