HEADER TRANSPORT PROTEIN 09-JUN-16 5KE1 TITLE STRUCTURE OF A C-TERMINAL FRAGMENT OF THE ICSA/VIRG PASSENGER-DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN ICSA AUTOTRANSPORTER; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 419-758; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 3 ORGANISM_TAXID: 623; SOURCE 4 GENE: ICSA, VIRG, CP0182; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRULENCE FACTOR, AUTOCHAPERONE, AUTOTRANSPORTER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.LEUPOLD,A.SCRIMA REVDAT 3 10-JAN-24 5KE1 1 LINK REVDAT 2 03-MAY-17 5KE1 1 JRNL REVDAT 1 15-MAR-17 5KE1 0 JRNL AUTH S.LEUPOLD,P.BUSING,P.J.MAS,D.J.HART,A.SCRIMA JRNL TITL STRUCTURAL INSIGHTS INTO THE ARCHITECTURE OF THE SHIGELLA JRNL TITL 2 FLEXNERI VIRULENCE FACTOR ICSA/VIRG AND MOTIFS INVOLVED IN JRNL TITL 3 POLAR DISTRIBUTION AND SECRETION. JRNL REF J. STRUCT. BIOL. V. 198 19 2017 JRNL REFN ESSN 1095-8657 JRNL PMID 28268178 JRNL DOI 10.1016/J.JSB.2017.03.003 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 52451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2623 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.3455 - 5.0671 0.99 2712 143 0.1529 0.1658 REMARK 3 2 5.0671 - 4.0229 0.99 2658 139 0.1200 0.1286 REMARK 3 3 4.0229 - 3.5147 0.99 2665 141 0.1454 0.1697 REMARK 3 4 3.5147 - 3.1934 0.99 2659 140 0.1641 0.1957 REMARK 3 5 3.1934 - 2.9646 0.99 2618 137 0.1716 0.2031 REMARK 3 6 2.9646 - 2.7899 0.99 2636 139 0.1734 0.2284 REMARK 3 7 2.7899 - 2.6502 0.99 2655 140 0.1752 0.1910 REMARK 3 8 2.6502 - 2.5348 0.99 2624 138 0.1774 0.2309 REMARK 3 9 2.5348 - 2.4372 0.99 2637 139 0.1716 0.1950 REMARK 3 10 2.4372 - 2.3531 0.98 2611 137 0.1729 0.2257 REMARK 3 11 2.3531 - 2.2796 0.98 2614 138 0.1720 0.2256 REMARK 3 12 2.2796 - 2.2144 0.98 2594 136 0.1870 0.2174 REMARK 3 13 2.2144 - 2.1561 0.98 2593 137 0.1856 0.2616 REMARK 3 14 2.1561 - 2.1035 0.98 2578 136 0.1964 0.2476 REMARK 3 15 2.1035 - 2.0557 0.98 2638 138 0.2068 0.2480 REMARK 3 16 2.0557 - 2.0120 0.98 2562 135 0.2178 0.2318 REMARK 3 17 2.0120 - 1.9717 0.98 2622 138 0.2366 0.2803 REMARK 3 18 1.9717 - 1.9345 0.98 2603 137 0.2439 0.2814 REMARK 3 19 1.9345 - 1.9000 0.97 2549 135 0.2630 0.2753 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4845 REMARK 3 ANGLE : 0.693 6577 REMARK 3 CHIRALITY : 0.052 778 REMARK 3 PLANARITY : 0.004 847 REMARK 3 DIHEDRAL : 9.773 2855 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 419 THROUGH 468 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1184 18.9813 -13.1684 REMARK 3 T TENSOR REMARK 3 T11: 0.3937 T22: 0.7568 REMARK 3 T33: 0.3521 T12: -0.0044 REMARK 3 T13: -0.0543 T23: 0.0806 REMARK 3 L TENSOR REMARK 3 L11: 0.7746 L22: 0.0943 REMARK 3 L33: 9.0212 L12: -0.5440 REMARK 3 L13: 2.9947 L23: -1.4227 REMARK 3 S TENSOR REMARK 3 S11: -0.0854 S12: 0.1432 S13: 0.0968 REMARK 3 S21: -0.1901 S22: -0.0076 S23: 0.1908 REMARK 3 S31: -0.3328 S32: -0.3055 S33: 0.0400 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 469 THROUGH 546 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3133 18.7537 -4.3875 REMARK 3 T TENSOR REMARK 3 T11: 0.3697 T22: 0.7828 REMARK 3 T33: 0.3481 T12: -0.0871 REMARK 3 T13: -0.0368 T23: 0.2193 REMARK 3 L TENSOR REMARK 3 L11: 1.4271 L22: 1.1090 REMARK 3 L33: 5.2090 L12: -0.8900 REMARK 3 L13: 1.4002 L23: -0.6828 REMARK 3 S TENSOR REMARK 3 S11: -0.0878 S12: 0.8851 S13: 0.4313 REMARK 3 S21: -0.1595 S22: -0.2701 S23: -0.2178 REMARK 3 S31: -0.4108 S32: 0.5773 S33: 0.2741 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 547 THROUGH 652 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9235 6.7593 15.7239 REMARK 3 T TENSOR REMARK 3 T11: 0.2184 T22: 0.3292 REMARK 3 T33: 0.1532 T12: -0.0276 REMARK 3 T13: -0.0085 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 3.0024 L22: 1.9137 REMARK 3 L33: 4.0266 L12: -0.8005 REMARK 3 L13: 2.3920 L23: -1.0899 REMARK 3 S TENSOR REMARK 3 S11: 0.1291 S12: 0.3728 S13: -0.0481 REMARK 3 S21: -0.2970 S22: -0.0751 S23: 0.0710 REMARK 3 S31: 0.4020 S32: 0.0618 S33: -0.0514 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 653 THROUGH 669 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9530 -5.1632 27.8159 REMARK 3 T TENSOR REMARK 3 T11: 0.3125 T22: 0.3028 REMARK 3 T33: 0.2503 T12: -0.0568 REMARK 3 T13: -0.0361 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 2.1121 L22: 3.5052 REMARK 3 L33: 4.4398 L12: 1.3610 REMARK 3 L13: 0.2620 L23: -2.8184 REMARK 3 S TENSOR REMARK 3 S11: -0.0256 S12: 0.2187 S13: -0.4824 REMARK 3 S21: -0.4971 S22: 0.2821 S23: -0.0744 REMARK 3 S31: 0.7674 S32: -0.4355 S33: -0.2590 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 670 THROUGH 691 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2361 -1.8676 34.0894 REMARK 3 T TENSOR REMARK 3 T11: 0.2990 T22: 0.3927 REMARK 3 T33: 0.1773 T12: -0.1329 REMARK 3 T13: -0.0123 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 4.0943 L22: 4.8135 REMARK 3 L33: 0.5669 L12: 1.1412 REMARK 3 L13: 0.3851 L23: -1.4061 REMARK 3 S TENSOR REMARK 3 S11: 0.0739 S12: -0.1199 S13: -0.2291 REMARK 3 S21: 0.0652 S22: 0.2096 S23: 0.5068 REMARK 3 S31: 0.1859 S32: -0.2979 S33: -0.2703 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 692 THROUGH 715 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5006 2.4390 33.5972 REMARK 3 T TENSOR REMARK 3 T11: 0.1950 T22: 0.3311 REMARK 3 T33: 0.1617 T12: -0.0626 REMARK 3 T13: -0.0349 T23: 0.0410 REMARK 3 L TENSOR REMARK 3 L11: 4.0966 L22: 5.8379 REMARK 3 L33: 2.2132 L12: 2.1671 REMARK 3 L13: -1.6671 L23: -1.8940 REMARK 3 S TENSOR REMARK 3 S11: 0.1857 S12: -0.4541 S13: -0.0145 REMARK 3 S21: 0.2605 S22: -0.0437 S23: 0.3599 REMARK 3 S31: 0.1304 S32: -0.2590 S33: -0.1558 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 716 THROUGH 740 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0595 -3.1817 38.5361 REMARK 3 T TENSOR REMARK 3 T11: 0.3615 T22: 0.4033 REMARK 3 T33: 0.1732 T12: -0.1391 REMARK 3 T13: -0.0574 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 5.7949 L22: 7.4602 REMARK 3 L33: 2.5249 L12: 2.7016 REMARK 3 L13: 0.0067 L23: -3.9867 REMARK 3 S TENSOR REMARK 3 S11: 0.4773 S12: -1.0061 S13: 0.1019 REMARK 3 S21: 0.5892 S22: -0.2484 S23: 0.1985 REMARK 3 S31: 0.0434 S32: -0.0092 S33: -0.1738 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 422 THROUGH 450 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2587 15.4734 83.3227 REMARK 3 T TENSOR REMARK 3 T11: 0.4168 T22: 0.5563 REMARK 3 T33: 0.2918 T12: 0.0862 REMARK 3 T13: -0.1147 T23: -0.0501 REMARK 3 L TENSOR REMARK 3 L11: 4.0368 L22: 3.5083 REMARK 3 L33: 6.0118 L12: -1.6876 REMARK 3 L13: 4.2593 L23: -3.9399 REMARK 3 S TENSOR REMARK 3 S11: 0.3018 S12: -0.4515 S13: -0.3198 REMARK 3 S21: 0.1324 S22: -0.0501 S23: 0.1510 REMARK 3 S31: 0.2038 S32: -0.4660 S33: -0.1113 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 451 THROUGH 546 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9817 11.5838 69.4332 REMARK 3 T TENSOR REMARK 3 T11: 0.3999 T22: 0.3716 REMARK 3 T33: 0.2366 T12: 0.0944 REMARK 3 T13: -0.0401 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 2.7241 L22: 1.5654 REMARK 3 L33: 6.4606 L12: 0.3771 REMARK 3 L13: 0.4615 L23: -0.1782 REMARK 3 S TENSOR REMARK 3 S11: -0.0352 S12: -0.5713 S13: -0.2111 REMARK 3 S21: 0.3341 S22: 0.0607 S23: -0.1061 REMARK 3 S31: 0.7661 S32: -0.0321 S33: -0.0538 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 547 THROUGH 652 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1610 22.0725 46.7549 REMARK 3 T TENSOR REMARK 3 T11: 0.1530 T22: 0.1897 REMARK 3 T33: 0.2266 T12: 0.0108 REMARK 3 T13: -0.0194 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 1.9421 L22: 1.6576 REMARK 3 L33: 5.2474 L12: 0.2957 REMARK 3 L13: 0.4604 L23: 0.0936 REMARK 3 S TENSOR REMARK 3 S11: -0.1015 S12: -0.1342 S13: 0.3139 REMARK 3 S21: 0.0690 S22: 0.1181 S23: -0.0734 REMARK 3 S31: -0.1531 S32: 0.0536 S33: -0.0190 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 653 THROUGH 740 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0284 31.2237 28.5093 REMARK 3 T TENSOR REMARK 3 T11: 0.3917 T22: 0.2806 REMARK 3 T33: 0.3849 T12: -0.0256 REMARK 3 T13: -0.0613 T23: 0.0996 REMARK 3 L TENSOR REMARK 3 L11: 2.5740 L22: 6.3251 REMARK 3 L33: 3.5240 L12: 0.6262 REMARK 3 L13: -0.0672 L23: -0.3181 REMARK 3 S TENSOR REMARK 3 S11: -0.1646 S12: 0.4043 S13: 0.7313 REMARK 3 S21: -0.4539 S22: 0.0421 S23: 0.0390 REMARK 3 S31: -0.8848 S32: 0.0021 S33: 0.0480 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KE1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000220494. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52462 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 42.335 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.81700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ML3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M KCL, 0.1 M TRIS PH 7.2, 26% REMARK 280 JEFFAMINE M-2070, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.33500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 418 REMARK 465 ASN A 741 REMARK 465 GLN A 742 REMARK 465 GLU A 743 REMARK 465 SER A 744 REMARK 465 LYS A 745 REMARK 465 GLN A 746 REMARK 465 MET A 747 REMARK 465 SER A 748 REMARK 465 ASN A 749 REMARK 465 GLN A 750 REMARK 465 GLU A 751 REMARK 465 SER A 752 REMARK 465 THR A 753 REMARK 465 GLN A 754 REMARK 465 MET A 755 REMARK 465 SER A 756 REMARK 465 SER A 757 REMARK 465 ARG A 758 REMARK 465 GLY B 418 REMARK 465 PHE B 419 REMARK 465 GLY B 420 REMARK 465 ASN B 421 REMARK 465 ASN B 741 REMARK 465 GLN B 742 REMARK 465 GLU B 743 REMARK 465 SER B 744 REMARK 465 LYS B 745 REMARK 465 GLN B 746 REMARK 465 MET B 747 REMARK 465 SER B 748 REMARK 465 ASN B 749 REMARK 465 GLN B 750 REMARK 465 GLU B 751 REMARK 465 SER B 752 REMARK 465 THR B 753 REMARK 465 GLN B 754 REMARK 465 MET B 755 REMARK 465 SER B 756 REMARK 465 SER B 757 REMARK 465 ARG B 758 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 419 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 421 CG OD1 ND2 REMARK 470 ASN A 453 CG OD1 ND2 REMARK 470 LEU A 514 CG CD1 CD2 REMARK 470 SER A 515 OG REMARK 470 HIS A 516 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 517 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 520 CG OD1 ND2 REMARK 470 HIS B 516 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 517 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 687 CG CD CE NZ REMARK 470 ARG B 710 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER B 627 O HOH B 906 1.59 REMARK 500 HH TYR A 481 O HOH A 810 1.59 REMARK 500 OD2 ASP B 475 O HOH B 901 1.91 REMARK 500 OG1 THR A 463 O HOH A 801 2.04 REMARK 500 O HOH B 924 O HOH B 1090 2.05 REMARK 500 O HOH B 1069 O HOH B 1111 2.10 REMARK 500 O HOH A 960 O HOH A 993 2.18 REMARK 500 NZ LYS B 638 O HOH B 902 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HE2 HIS A 669 NI NI B 801 1655 1.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 521 60.60 37.31 REMARK 500 MET A 562 58.87 -157.22 REMARK 500 ASN A 586 -61.84 70.69 REMARK 500 GLU A 681 79.26 -115.94 REMARK 500 ASN B 501 -5.88 77.87 REMARK 500 HIS B 516 153.18 -44.71 REMARK 500 MET B 562 55.12 -163.73 REMARK 500 ASN B 586 -73.71 74.76 REMARK 500 ASN B 625 77.73 -101.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 801 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 669 NE2 REMARK 620 2 ASP A 701 OD1 95.4 REMARK 620 3 ASP A 701 OD2 101.5 56.0 REMARK 620 4 HIS B 669 NE2 86.1 91.4 37.7 REMARK 620 5 ASP B 701 OD1 84.6 95.8 42.3 4.6 REMARK 620 6 ASP B 701 OD2 87.1 93.4 39.2 2.3 3.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI B 801 DBREF 5KE1 A 419 758 UNP Q7BCK4 ICSA_SHIFL 419 758 DBREF 5KE1 B 419 758 UNP Q7BCK4 ICSA_SHIFL 419 758 SEQADV 5KE1 GLY A 418 UNP Q7BCK4 EXPRESSION TAG SEQADV 5KE1 GLY B 418 UNP Q7BCK4 EXPRESSION TAG SEQRES 1 A 341 GLY PHE GLY ASN ASN VAL LYS VAL GLU ALA ILE ILE ASN SEQRES 2 A 341 ASN TRP ALA GLN LYS ASP TYR LYS LEU LEU SER ALA ASP SEQRES 3 A 341 LYS GLY ILE THR GLY PHE SER VAL SER ASN ILE SER ILE SEQRES 4 A 341 ILE ASN PRO LEU LEU THR THR GLY ALA ILE ASP TYR THR SEQRES 5 A 341 LYS SER TYR ILE SER ASP GLN ASN LYS LEU ILE TYR GLY SEQRES 6 A 341 LEU SER TRP ASN ASP THR ASP GLY ASP SER HIS GLY GLU SEQRES 7 A 341 PHE ASN LEU LYS GLU ASN ALA GLU LEU THR VAL SER THR SEQRES 8 A 341 ILE LEU ALA ASP ASN LEU SER HIS HIS ASN ILE ASN SER SEQRES 9 A 341 TRP ASP GLY LYS SER LEU THR LYS SER GLY GLU GLY THR SEQRES 10 A 341 LEU ILE LEU ALA GLU LYS ASN THR TYR SER GLY PHE THR SEQRES 11 A 341 ASN ILE ASN ALA GLY ILE LEU LYS MET GLY THR VAL GLU SEQRES 12 A 341 ALA MET THR ARG THR ALA GLY VAL ILE VAL ASN LYS GLY SEQRES 13 A 341 ALA THR LEU ASN PHE SER GLY MET ASN GLN THR VAL ASN SEQRES 14 A 341 THR LEU LEU ASN SER GLY THR VAL LEU ILE ASN ASN ILE SEQRES 15 A 341 ASN ALA PRO PHE LEU PRO ASP PRO VAL ILE VAL THR GLY SEQRES 16 A 341 ASN MET THR LEU GLU LYS ASN GLY HIS VAL ILE LEU ASN SEQRES 17 A 341 ASN SER SER SER ASN VAL GLY GLN THR TYR VAL GLN LYS SEQRES 18 A 341 GLY ASN TRP HIS GLY LYS GLY GLY ILE LEU SER LEU GLY SEQRES 19 A 341 ALA VAL LEU GLY ASN ASP ASN SER LYS THR ASP ARG LEU SEQRES 20 A 341 GLU ILE ALA GLY HIS ALA SER GLY ILE THR TYR VAL ALA SEQRES 21 A 341 VAL THR ASN GLU GLY GLY SER GLY ASP LYS THR LEU GLU SEQRES 22 A 341 GLY VAL GLN ILE ILE SER THR ASP SER SER ASP LYS ASN SEQRES 23 A 341 ALA PHE ILE GLN LYS GLY ARG ILE VAL ALA GLY SER TYR SEQRES 24 A 341 ASP TYR ARG LEU LYS GLN GLY THR VAL SER GLY LEU ASN SEQRES 25 A 341 THR ASN LYS TRP TYR LEU THR SER GLN MET ASP ASN GLN SEQRES 26 A 341 GLU SER LYS GLN MET SER ASN GLN GLU SER THR GLN MET SEQRES 27 A 341 SER SER ARG SEQRES 1 B 341 GLY PHE GLY ASN ASN VAL LYS VAL GLU ALA ILE ILE ASN SEQRES 2 B 341 ASN TRP ALA GLN LYS ASP TYR LYS LEU LEU SER ALA ASP SEQRES 3 B 341 LYS GLY ILE THR GLY PHE SER VAL SER ASN ILE SER ILE SEQRES 4 B 341 ILE ASN PRO LEU LEU THR THR GLY ALA ILE ASP TYR THR SEQRES 5 B 341 LYS SER TYR ILE SER ASP GLN ASN LYS LEU ILE TYR GLY SEQRES 6 B 341 LEU SER TRP ASN ASP THR ASP GLY ASP SER HIS GLY GLU SEQRES 7 B 341 PHE ASN LEU LYS GLU ASN ALA GLU LEU THR VAL SER THR SEQRES 8 B 341 ILE LEU ALA ASP ASN LEU SER HIS HIS ASN ILE ASN SER SEQRES 9 B 341 TRP ASP GLY LYS SER LEU THR LYS SER GLY GLU GLY THR SEQRES 10 B 341 LEU ILE LEU ALA GLU LYS ASN THR TYR SER GLY PHE THR SEQRES 11 B 341 ASN ILE ASN ALA GLY ILE LEU LYS MET GLY THR VAL GLU SEQRES 12 B 341 ALA MET THR ARG THR ALA GLY VAL ILE VAL ASN LYS GLY SEQRES 13 B 341 ALA THR LEU ASN PHE SER GLY MET ASN GLN THR VAL ASN SEQRES 14 B 341 THR LEU LEU ASN SER GLY THR VAL LEU ILE ASN ASN ILE SEQRES 15 B 341 ASN ALA PRO PHE LEU PRO ASP PRO VAL ILE VAL THR GLY SEQRES 16 B 341 ASN MET THR LEU GLU LYS ASN GLY HIS VAL ILE LEU ASN SEQRES 17 B 341 ASN SER SER SER ASN VAL GLY GLN THR TYR VAL GLN LYS SEQRES 18 B 341 GLY ASN TRP HIS GLY LYS GLY GLY ILE LEU SER LEU GLY SEQRES 19 B 341 ALA VAL LEU GLY ASN ASP ASN SER LYS THR ASP ARG LEU SEQRES 20 B 341 GLU ILE ALA GLY HIS ALA SER GLY ILE THR TYR VAL ALA SEQRES 21 B 341 VAL THR ASN GLU GLY GLY SER GLY ASP LYS THR LEU GLU SEQRES 22 B 341 GLY VAL GLN ILE ILE SER THR ASP SER SER ASP LYS ASN SEQRES 23 B 341 ALA PHE ILE GLN LYS GLY ARG ILE VAL ALA GLY SER TYR SEQRES 24 B 341 ASP TYR ARG LEU LYS GLN GLY THR VAL SER GLY LEU ASN SEQRES 25 B 341 THR ASN LYS TRP TYR LEU THR SER GLN MET ASP ASN GLN SEQRES 26 B 341 GLU SER LYS GLN MET SER ASN GLN GLU SER THR GLN MET SEQRES 27 B 341 SER SER ARG HET NI B 801 1 HETNAM NI NICKEL (II) ION FORMUL 3 NI NI 2+ FORMUL 4 HOH *463(H2 O) HELIX 1 AA1 ASP A 443 GLY A 448 1 6 HELIX 2 AA2 SER A 450 SER A 452 5 3 HELIX 3 AA3 TRP A 485 ASP A 487 5 3 HELIX 4 AA4 ASP B 443 GLY B 448 1 6 HELIX 5 AA5 SER B 450 SER B 452 5 3 HELIX 6 AA6 TRP B 485 ASP B 487 5 3 SHEET 1 A 2 VAL A 423 GLU A 426 0 SHEET 2 A 2 ILE A 454 ILE A 457 1 SHEET 1 B 3 THR A 469 ILE A 473 0 SHEET 2 B 3 LYS A 478 LEU A 483 -1 SHEET 3 B 3 TYR A 437 SER A 441 -1 SHEET 1 C12 GLU A 495 ASN A 497 0 SHEET 2 C12 LEU A 527 SER A 530 1 SHEET 3 C12 THR A 547 ILE A 549 1 SHEET 4 C12 VAL A 568 VAL A 570 1 SHEET 5 C12 GLN A 583 ASN A 590 1 SHEET 6 C12 VAL A 608 LEU A 616 1 SHEET 7 C12 THR A 634 LYS A 638 1 SHEET 8 C12 ARG A 663 ILE A 666 1 SHEET 9 C12 VAL A 692 THR A 697 1 SHEET 10 C12 LYS A 732 MET A 739 -1 SHEET 11 C12 TYR A 716 GLN A 722 -1 SHEET 12 C12 ILE A 711 ALA A 713 -1 SHEET 1 D 9 GLU A 503 VAL A 506 0 SHEET 2 D 9 THR A 534 LEU A 537 1 SHEET 3 D 9 ILE A 553 MET A 556 1 SHEET 4 D 9 THR A 575 ASN A 577 1 SHEET 5 D 9 THR A 593 LEU A 595 1 SHEET 6 D 9 HIS A 621 ILE A 623 1 SHEET 7 D 9 ILE A 647 ALA A 652 1 SHEET 8 D 9 THR A 674 ASN A 680 1 SHEET 9 D 9 PHE A 705 GLN A 707 1 SHEET 1 E 3 MET A 614 GLU A 617 0 SHEET 2 E 3 TRP A 641 LYS A 644 1 SHEET 3 E 3 ALA A 670 ILE A 673 1 SHEET 1 F 2 VAL B 423 GLU B 426 0 SHEET 2 F 2 ILE B 454 ILE B 457 1 SHEET 1 G 3 THR B 469 ILE B 473 0 SHEET 2 G 3 LYS B 478 LEU B 483 -1 SHEET 3 G 3 ASP B 436 SER B 441 -1 SHEET 1 H11 GLU B 495 ASN B 497 0 SHEET 2 H11 LEU B 527 SER B 530 1 SHEET 3 H11 THR B 547 ILE B 549 1 SHEET 4 H11 VAL B 568 VAL B 570 1 SHEET 5 H11 GLN B 583 ASN B 590 1 SHEET 6 H11 VAL B 608 LEU B 616 1 SHEET 7 H11 THR B 634 LYS B 638 1 SHEET 8 H11 ARG B 663 ILE B 666 1 SHEET 9 H11 VAL B 692 THR B 697 1 SHEET 10 H11 LYS B 732 GLN B 738 -1 SHEET 11 H11 ASP B 717 GLN B 722 -1 SHEET 1 I 9 GLU B 503 VAL B 506 0 SHEET 2 I 9 THR B 534 LEU B 537 1 SHEET 3 I 9 ILE B 553 MET B 556 1 SHEET 4 I 9 THR B 575 ASN B 577 1 SHEET 5 I 9 THR B 593 LEU B 595 1 SHEET 6 I 9 HIS B 621 ILE B 623 1 SHEET 7 I 9 ILE B 647 ALA B 652 1 SHEET 8 I 9 THR B 674 ASN B 680 1 SHEET 9 I 9 PHE B 705 GLN B 707 1 SHEET 1 J 3 MET B 614 LEU B 616 0 SHEET 2 J 3 TRP B 641 LYS B 644 1 SHEET 3 J 3 ALA B 670 ILE B 673 1 LINK NE2 HIS A 669 NI NI B 801 1555 1655 1.95 LINK OD1 ASP A 701 NI NI B 801 1555 1655 2.58 LINK OD2 ASP A 701 NI NI B 801 1555 1655 1.96 LINK NE2 HIS B 669 NI NI B 801 1555 1555 2.03 LINK OD1 ASP B 701 NI NI B 801 1555 1555 2.56 LINK OD2 ASP B 701 NI NI B 801 1555 1555 1.94 SITE 1 AC1 5 HIS A 669 SER A 671 ASP A 701 HIS B 669 SITE 2 AC1 5 ASP B 701 CRYST1 35.870 84.670 114.270 90.00 98.46 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027878 0.000000 0.004146 0.00000 SCALE2 0.000000 0.011811 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008847 0.00000