HEADER TRANSCRIPTION/DNA 09-JUN-16 5KE7 TITLE MOUSE KLF4 ZNF1-3 AND TPG/MPA SEQUENCE DNA COMPLEX STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: KRUEPPEL-LIKE FACTOR 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 396-483; COMPND 5 SYNONYM: EPITHELIAL ZINC FINGER PROTEIN EZF,GUT-ENRICHED KRUEPPEL- COMPND 6 LIKE FACTOR; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*GP*AP*GP*GP*TP*GP*TP*GP*GP*C)-3'); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(*GP*CP*CP*AP*(5CM)P*AP*CP*CP*TP*C)-3'); COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: KLF4, EZF, GKLF, ZIE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PGEX-6P-1; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PXC1248; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS KLF4, ZINC FINGER, KRUPPEL-LIKE FACTORS, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.HASHIMOTO,X.CHENG REVDAT 6 27-SEP-23 5KE7 1 REMARK REVDAT 5 25-DEC-19 5KE7 1 REMARK REVDAT 4 20-SEP-17 5KE7 1 REMARK REVDAT 3 14-DEC-16 5KE7 1 JRNL REVDAT 2 21-SEP-16 5KE7 1 JRNL REVDAT 1 14-SEP-16 5KE7 0 JRNL AUTH H.HASHIMOTO,D.WANG,A.N.STEVES,P.JIN,R.M.BLUMENTHAL,X.ZHANG, JRNL AUTH 2 X.CHENG JRNL TITL DISTINCTIVE KLF4 MUTANTS DETERMINE PREFERENCE FOR DNA JRNL TITL 2 METHYLATION STATUS. JRNL REF NUCLEIC ACIDS RES. V. 44 10177 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 27596594 JRNL DOI 10.1093/NAR/GKW774 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2376: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.470 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 11161 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 557 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.5990 - 3.2697 0.99 2796 146 0.1738 0.1843 REMARK 3 2 3.2697 - 2.5955 1.00 2637 139 0.2019 0.2446 REMARK 3 3 2.5955 - 2.2675 1.00 2605 137 0.2105 0.2318 REMARK 3 4 2.2675 - 2.0602 1.00 2566 135 0.2463 0.2992 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1208 REMARK 3 ANGLE : 0.659 1701 REMARK 3 CHIRALITY : 0.035 172 REMARK 3 PLANARITY : 0.003 147 REMARK 3 DIHEDRAL : 24.392 626 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 397 THROUGH 401 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8569 -13.6343 -2.3940 REMARK 3 T TENSOR REMARK 3 T11: 0.3247 T22: 0.8277 REMARK 3 T33: 0.3713 T12: -0.1162 REMARK 3 T13: -0.0399 T23: 0.0608 REMARK 3 L TENSOR REMARK 3 L11: 3.7350 L22: 3.1077 REMARK 3 L33: 2.2598 L12: -3.2996 REMARK 3 L13: 1.7646 L23: -1.4490 REMARK 3 S TENSOR REMARK 3 S11: -0.0281 S12: 1.2228 S13: 0.6022 REMARK 3 S21: -0.0031 S22: -0.3387 S23: -0.9627 REMARK 3 S31: 0.0867 S32: 0.8588 S33: -0.0891 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 402 THROUGH 425 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8140 -11.2430 2.2710 REMARK 3 T TENSOR REMARK 3 T11: 0.3315 T22: 0.3962 REMARK 3 T33: 0.3821 T12: -0.1006 REMARK 3 T13: -0.0862 T23: 0.0828 REMARK 3 L TENSOR REMARK 3 L11: 3.7142 L22: 3.3781 REMARK 3 L33: 3.0967 L12: -1.4344 REMARK 3 L13: -0.1574 L23: 0.0578 REMARK 3 S TENSOR REMARK 3 S11: -0.1345 S12: 0.4859 S13: 0.5413 REMARK 3 S21: -0.1408 S22: 0.0756 S23: -0.1664 REMARK 3 S31: -0.2870 S32: 0.4377 S33: 0.0517 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 426 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5949 -15.5647 4.5330 REMARK 3 T TENSOR REMARK 3 T11: 0.3221 T22: 0.2985 REMARK 3 T33: 0.3126 T12: 0.0239 REMARK 3 T13: -0.0969 T23: 0.0516 REMARK 3 L TENSOR REMARK 3 L11: 6.8571 L22: 2.8211 REMARK 3 L33: 3.6026 L12: 2.8531 REMARK 3 L13: 0.6306 L23: 2.6012 REMARK 3 S TENSOR REMARK 3 S11: -0.3547 S12: 0.2372 S13: -0.1459 REMARK 3 S21: -0.2045 S22: -0.0124 S23: 0.7964 REMARK 3 S31: -0.4347 S32: 0.1511 S33: -0.0030 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 431 THROUGH 435 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3594 -24.2725 9.7757 REMARK 3 T TENSOR REMARK 3 T11: 0.3221 T22: 0.3598 REMARK 3 T33: 0.3920 T12: -0.0264 REMARK 3 T13: -0.0525 T23: 0.0565 REMARK 3 L TENSOR REMARK 3 L11: 4.4082 L22: 4.0499 REMARK 3 L33: 7.1117 L12: 4.2060 REMARK 3 L13: -5.5466 L23: -5.3623 REMARK 3 S TENSOR REMARK 3 S11: -0.0370 S12: 0.5587 S13: 0.1353 REMARK 3 S21: -0.1325 S22: 0.3416 S23: 0.9924 REMARK 3 S31: 0.0034 S32: -0.5777 S33: -0.1438 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 436 THROUGH 455 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8146 -23.8852 11.9945 REMARK 3 T TENSOR REMARK 3 T11: 0.2601 T22: 0.2661 REMARK 3 T33: 0.2537 T12: 0.0071 REMARK 3 T13: -0.0054 T23: 0.0546 REMARK 3 L TENSOR REMARK 3 L11: 3.8714 L22: 2.0745 REMARK 3 L33: 2.0831 L12: -0.0311 REMARK 3 L13: -0.1879 L23: 0.1713 REMARK 3 S TENSOR REMARK 3 S11: -0.0033 S12: -0.0088 S13: 0.0975 REMARK 3 S21: 0.3063 S22: 0.0387 S23: -0.0194 REMARK 3 S31: -0.2375 S32: -0.0972 S33: -0.0517 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 456 THROUGH 460 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9109 -36.5235 16.8766 REMARK 3 T TENSOR REMARK 3 T11: 0.3991 T22: 0.2027 REMARK 3 T33: 0.4138 T12: -0.0002 REMARK 3 T13: -0.0402 T23: 0.0961 REMARK 3 L TENSOR REMARK 3 L11: 4.6364 L22: 3.5481 REMARK 3 L33: 1.7143 L12: -3.5236 REMARK 3 L13: -0.2373 L23: 1.3974 REMARK 3 S TENSOR REMARK 3 S11: 0.1311 S12: 0.1208 S13: -0.7066 REMARK 3 S21: 0.1159 S22: 0.0781 S23: -0.1190 REMARK 3 S31: 0.3115 S32: 0.3176 S33: -0.0088 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 461 THROUGH 465 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1369 -44.3596 22.3213 REMARK 3 T TENSOR REMARK 3 T11: 0.3720 T22: 0.3446 REMARK 3 T33: 0.5507 T12: 0.1207 REMARK 3 T13: 0.0115 T23: 0.0866 REMARK 3 L TENSOR REMARK 3 L11: 1.2146 L22: 7.4580 REMARK 3 L33: 2.1240 L12: 2.3886 REMARK 3 L13: 0.9135 L23: -0.0785 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: -0.6051 S13: -0.9009 REMARK 3 S21: 0.4592 S22: 0.3602 S23: 0.8892 REMARK 3 S31: 0.0629 S32: -0.0105 S33: -0.3200 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 466 THROUGH 471 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7874 -36.3331 21.8942 REMARK 3 T TENSOR REMARK 3 T11: 0.3686 T22: 0.2866 REMARK 3 T33: 0.4818 T12: 0.0939 REMARK 3 T13: 0.0278 T23: 0.1136 REMARK 3 L TENSOR REMARK 3 L11: 2.4366 L22: 6.5691 REMARK 3 L33: 4.3066 L12: 1.5971 REMARK 3 L13: -1.0829 L23: -5.2860 REMARK 3 S TENSOR REMARK 3 S11: -0.3015 S12: 0.0819 S13: -0.4159 REMARK 3 S21: 0.0524 S22: 0.2991 S23: 0.3949 REMARK 3 S31: 0.0680 S32: -0.1971 S33: -0.1334 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 472 THROUGH 483 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9186 -36.5814 22.9995 REMARK 3 T TENSOR REMARK 3 T11: 0.4271 T22: 0.3508 REMARK 3 T33: 0.3895 T12: 0.0621 REMARK 3 T13: 0.0216 T23: 0.0224 REMARK 3 L TENSOR REMARK 3 L11: 7.4944 L22: 6.2471 REMARK 3 L33: 9.1171 L12: -6.0603 REMARK 3 L13: 7.1837 L23: -7.3481 REMARK 3 S TENSOR REMARK 3 S11: -0.6090 S12: -0.9397 S13: -0.0339 REMARK 3 S21: 0.8666 S22: 0.5423 S23: -0.5214 REMARK 3 S31: -0.0279 S32: -0.2671 S33: 0.1028 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8949 -23.9998 10.2657 REMARK 3 T TENSOR REMARK 3 T11: 0.3120 T22: 0.3238 REMARK 3 T33: 0.2441 T12: 0.0254 REMARK 3 T13: -0.0244 T23: 0.0395 REMARK 3 L TENSOR REMARK 3 L11: 0.4131 L22: 1.3295 REMARK 3 L33: 2.1923 L12: 0.4388 REMARK 3 L13: 0.3612 L23: -0.0890 REMARK 3 S TENSOR REMARK 3 S11: -0.0688 S12: 0.0899 S13: 0.0023 REMARK 3 S21: 0.1912 S22: 0.1392 S23: 0.1331 REMARK 3 S31: 0.0461 S32: 0.1884 S33: -0.0837 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5461 -25.5419 11.1481 REMARK 3 T TENSOR REMARK 3 T11: 0.2976 T22: 0.3099 REMARK 3 T33: 0.2551 T12: -0.0136 REMARK 3 T13: -0.0289 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 1.5267 L22: 1.5012 REMARK 3 L33: 3.2528 L12: -0.2762 REMARK 3 L13: 1.2283 L23: 0.6323 REMARK 3 S TENSOR REMARK 3 S11: 0.1083 S12: 0.1440 S13: -0.1512 REMARK 3 S21: 0.1491 S22: 0.1629 S23: -0.0556 REMARK 3 S31: 0.3252 S32: 0.1045 S33: -0.3497 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KE7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000221911. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11180 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 34.604 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.82100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4M9E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH8.5 , 0.25M NACL AND REMARK 280 20% POLYETHYLENE GLYCOL 8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.19500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 25.37500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 25.37500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 97.79250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 25.37500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 25.37500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.59750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 25.37500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 25.37500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 97.79250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 25.37500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 25.37500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.59750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.19500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 391 REMARK 465 PRO A 392 REMARK 465 LEU A 393 REMARK 465 GLY A 394 REMARK 465 SER A 395 REMARK 465 ARG A 396 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 220 O HOH C 210 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT B 5 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 402 SG REMARK 620 2 CYS A 407 SG 118.8 REMARK 620 3 HIS A 420 NE2 110.9 103.2 REMARK 620 4 HIS A 424 NE2 113.5 108.3 100.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 432 SG REMARK 620 2 CYS A 437 SG 118.7 REMARK 620 3 HIS A 450 NE2 112.1 102.8 REMARK 620 4 HIS A 454 NE2 113.0 113.0 93.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 462 SG REMARK 620 2 CYS A 465 SG 117.0 REMARK 620 3 HIS A 478 NE2 114.3 99.8 REMARK 620 4 HIS A 482 NE2 108.3 121.7 92.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KEA RELATED DB: PDB REMARK 900 RELATED ID: 5KEB RELATED DB: PDB REMARK 900 RELATED ID: 5K5J RELATED DB: PDB REMARK 900 RELATED ID: 5K5I RELATED DB: PDB REMARK 900 RELATED ID: 5K5L RELATED DB: PDB REMARK 900 RELATED ID: 5K5H RELATED DB: PDB REMARK 900 RELATED ID: 5KE9 RELATED DB: PDB DBREF 5KE7 A 396 483 UNP Q60793 KLF4_MOUSE 396 483 DBREF 5KE7 B 1 10 PDB 5KE7 5KE7 1 10 DBREF 5KE7 C 1 10 PDB 5KE7 5KE7 1 10 SEQADV 5KE7 GLY A 391 UNP Q60793 EXPRESSION TAG SEQADV 5KE7 PRO A 392 UNP Q60793 EXPRESSION TAG SEQADV 5KE7 LEU A 393 UNP Q60793 EXPRESSION TAG SEQADV 5KE7 GLY A 394 UNP Q60793 EXPRESSION TAG SEQADV 5KE7 SER A 395 UNP Q60793 EXPRESSION TAG SEQRES 1 A 93 GLY PRO LEU GLY SER ARG THR ALA THR HIS THR CYS ASP SEQRES 2 A 93 TYR ALA GLY CYS GLY LYS THR TYR THR LYS SER SER HIS SEQRES 3 A 93 LEU LYS ALA HIS LEU ARG THR HIS THR GLY GLU LYS PRO SEQRES 4 A 93 TYR HIS CYS ASP TRP ASP GLY CYS GLY TRP LYS PHE ALA SEQRES 5 A 93 ARG SER ASP GLU LEU THR ARG HIS TYR ARG LYS HIS THR SEQRES 6 A 93 GLY HIS ARG PRO PHE GLN CYS GLN LYS CYS ASP ARG ALA SEQRES 7 A 93 PHE SER ARG SER ASP HIS LEU ALA LEU HIS MET LYS ARG SEQRES 8 A 93 HIS PHE SEQRES 1 B 10 DG DA DG DG DT DG DT DG DG DC SEQRES 1 C 10 DG DC DC DA 5CM DA DC DC DT DC HET 5CM C 5 33 HET EDO A 501 10 HET EDO A 502 10 HET ZN A 503 1 HET ZN A 504 1 HET ZN A 505 1 HET EDO B 101 10 HET EDO C 101 10 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 5CM C10 H16 N3 O7 P FORMUL 4 EDO 4(C2 H6 O2) FORMUL 6 ZN 3(ZN 2+) FORMUL 11 HOH *71(H2 O) HELIX 1 AA1 LYS A 413 GLY A 426 1 14 HELIX 2 AA2 ARG A 443 GLY A 456 1 14 HELIX 3 AA3 ARG A 471 ARG A 481 1 11 SHEET 1 AA1 2 HIS A 400 THR A 401 0 SHEET 2 AA1 2 THR A 410 TYR A 411 -1 O TYR A 411 N HIS A 400 SHEET 1 AA2 2 TYR A 430 HIS A 431 0 SHEET 2 AA2 2 LYS A 440 PHE A 441 -1 O PHE A 441 N TYR A 430 SHEET 1 AA3 2 PHE A 460 GLN A 461 0 SHEET 2 AA3 2 ALA A 468 PHE A 469 -1 O PHE A 469 N PHE A 460 LINK O3' DA C 4 P 5CM C 5 1555 1555 1.61 LINK O3' 5CM C 5 P DA C 6 1555 1555 1.60 LINK SG CYS A 402 ZN ZN A 505 1555 1555 2.28 LINK SG CYS A 407 ZN ZN A 505 1555 1555 2.37 LINK NE2 HIS A 420 ZN ZN A 505 1555 1555 2.09 LINK NE2 HIS A 424 ZN ZN A 505 1555 1555 2.10 LINK SG CYS A 432 ZN ZN A 504 1555 1555 2.26 LINK SG CYS A 437 ZN ZN A 504 1555 1555 2.27 LINK NE2 HIS A 450 ZN ZN A 504 1555 1555 2.10 LINK NE2 HIS A 454 ZN ZN A 504 1555 1555 2.11 LINK SG CYS A 462 ZN ZN A 503 1555 1555 2.29 LINK SG CYS A 465 ZN ZN A 503 1555 1555 2.28 LINK NE2 HIS A 478 ZN ZN A 503 1555 1555 2.12 LINK NE2 HIS A 482 ZN ZN A 503 1555 1555 2.11 SITE 1 AC1 4 ARG A 449 HOH A 610 HOH A 622 DA C 4 SITE 1 AC2 4 ARG A 443 HOH A 625 DT B 7 DC C 3 SITE 1 AC3 4 CYS A 462 CYS A 465 HIS A 478 HIS A 482 SITE 1 AC4 4 CYS A 432 CYS A 437 HIS A 450 HIS A 454 SITE 1 AC5 4 CYS A 402 CYS A 407 HIS A 420 HIS A 424 SITE 1 AC6 7 TYR A 411 HIS A 416 ALA A 419 ARG A 443 SITE 2 AC6 7 DT B 5 DG B 6 HOH B 203 SITE 1 AC7 4 DG B 6 DT B 7 DA C 6 DC C 7 CRYST1 50.750 50.750 130.390 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019704 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019704 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007669 0.00000