HEADER DNA BINDING PROTEIN 13-JUN-16 5KGO TITLE STRUCTURE OF K. PNEUMONIA MRKH-C-DI-GMP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAGELLAR BRAKE PROTEIN YCGR; COMPND 3 CHAIN: D, A; COMPND 4 SYNONYM: PUTATIVE GLYCOSYLTRANSFERASE,TYPE 3 FIMBRIAE TRANSCRIPTION COMPND 5 ACTIVATOR; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: MRKH, YCGR, AOT21_03001, PMK1_00755; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MRKH, BIOFILM, K. PNEUMONIA, PILZ, TRANSFERASE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.SCHUMACHER REVDAT 2 06-MAR-24 5KGO 1 REMARK HETSYN REVDAT 1 17-AUG-16 5KGO 0 JRNL AUTH M.SCHUMACHER,W.ZENG JRNL TITL TO BE PUBLISHED: STRUCTURES OF K. PNEUMONIA MRKH: DUAL JRNL TITL 2 UTILIZATION OF THE PILZ FOLD FOR C-DI-GMP AND DNA BINDING BY JRNL TITL 3 A NOVEL ACTIVATOR OF BIOFILM GENES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 14120 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1413 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.2876 - 6.2391 0.87 1281 144 0.2315 0.3085 REMARK 3 2 6.2391 - 4.9558 0.90 1263 139 0.2087 0.2662 REMARK 3 3 4.9558 - 4.3304 0.92 1270 141 0.1586 0.2083 REMARK 3 4 4.3304 - 3.9350 0.92 1270 142 0.1914 0.2484 REMARK 3 5 3.9350 - 3.6532 0.91 1240 137 0.2794 0.3268 REMARK 3 6 3.6532 - 3.4380 0.91 1231 137 0.2417 0.3223 REMARK 3 7 3.4380 - 3.2659 0.95 1308 145 0.2590 0.3222 REMARK 3 8 3.2659 - 3.1238 0.96 1271 142 0.2631 0.3693 REMARK 3 9 3.1238 - 3.0036 0.95 1285 142 0.2810 0.3227 REMARK 3 10 3.0036 - 2.9000 0.95 1288 144 0.3262 0.3693 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 57.73 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 97.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -12.86610 REMARK 3 B22 (A**2) : 24.91290 REMARK 3 B33 (A**2) : -12.04690 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.028 3959 REMARK 3 ANGLE : 1.721 5359 REMARK 3 CHIRALITY : 0.060 576 REMARK 3 PLANARITY : 0.045 655 REMARK 3 DIHEDRAL : 40.688 1607 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 5:107) REMARK 3 ORIGIN FOR THE GROUP (A): 42.0494 -0.1514 21.6018 REMARK 3 T TENSOR REMARK 3 T11: 0.6335 T22: 0.8870 REMARK 3 T33: 0.6870 T12: -0.0511 REMARK 3 T13: -0.1184 T23: 0.3139 REMARK 3 L TENSOR REMARK 3 L11: 1.1220 L22: 2.1174 REMARK 3 L33: 1.8395 L12: 1.2209 REMARK 3 L13: -0.4208 L23: -0.5885 REMARK 3 S TENSOR REMARK 3 S11: -0.2661 S12: 0.0493 S13: -0.5943 REMARK 3 S21: 0.4045 S22: -0.1712 S23: -0.3624 REMARK 3 S31: 0.4465 S32: -0.3008 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 108:200) REMARK 3 ORIGIN FOR THE GROUP (A): 33.7016 14.6006 -4.1487 REMARK 3 T TENSOR REMARK 3 T11: 0.4362 T22: 0.5454 REMARK 3 T33: 0.4225 T12: 0.0602 REMARK 3 T13: -0.0548 T23: 0.1058 REMARK 3 L TENSOR REMARK 3 L11: 2.2412 L22: 0.6014 REMARK 3 L33: 2.1042 L12: 1.4982 REMARK 3 L13: -1.0432 L23: 0.9276 REMARK 3 S TENSOR REMARK 3 S11: 0.1481 S12: -0.9807 S13: -0.5920 REMARK 3 S21: 0.1997 S22: -0.0750 S23: -0.3414 REMARK 3 S31: -0.3697 S32: -0.3771 S33: 0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 201:219) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7163 15.6358 -3.5955 REMARK 3 T TENSOR REMARK 3 T11: 0.1873 T22: 0.7766 REMARK 3 T33: 0.4509 T12: 0.0374 REMARK 3 T13: -0.0569 T23: -0.0667 REMARK 3 L TENSOR REMARK 3 L11: 0.7601 L22: 0.6675 REMARK 3 L33: -0.0326 L12: -0.4852 REMARK 3 L13: -0.8515 L23: 0.9565 REMARK 3 S TENSOR REMARK 3 S11: 0.0004 S12: 0.2587 S13: -0.1916 REMARK 3 S21: 0.1833 S22: -0.1702 S23: -0.3379 REMARK 3 S31: -1.1988 S32: 0.3901 S33: -0.0376 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 220:229) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5849 1.2236 -4.7368 REMARK 3 T TENSOR REMARK 3 T11: 0.7934 T22: 0.7124 REMARK 3 T33: 1.1983 T12: -0.1729 REMARK 3 T13: -0.1510 T23: -0.1175 REMARK 3 L TENSOR REMARK 3 L11: -0.0383 L22: 0.0606 REMARK 3 L33: 0.1969 L12: 0.0560 REMARK 3 L13: 0.1061 L23: -0.1584 REMARK 3 S TENSOR REMARK 3 S11: -0.7634 S12: -0.0528 S13: 0.6909 REMARK 3 S21: 0.8199 S22: 0.5600 S23: 1.9615 REMARK 3 S31: 0.6106 S32: -1.6549 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN D AND RESID 5:54) REMARK 3 ORIGIN FOR THE GROUP (A): 47.5478 43.5731 -37.9604 REMARK 3 T TENSOR REMARK 3 T11: 0.3658 T22: 0.5961 REMARK 3 T33: 0.4161 T12: 0.1660 REMARK 3 T13: -0.0786 T23: 0.1106 REMARK 3 L TENSOR REMARK 3 L11: 2.3184 L22: 2.9780 REMARK 3 L33: 1.4860 L12: 0.0846 REMARK 3 L13: -1.4550 L23: 0.9236 REMARK 3 S TENSOR REMARK 3 S11: -0.1288 S12: -0.2132 S13: 0.5992 REMARK 3 S21: -0.3386 S22: -0.1795 S23: 0.0858 REMARK 3 S31: 0.1230 S32: 0.3769 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN D AND RESID 55:107) REMARK 3 ORIGIN FOR THE GROUP (A): 52.0115 45.4425 -32.8905 REMARK 3 T TENSOR REMARK 3 T11: 0.5247 T22: 0.5552 REMARK 3 T33: 0.8323 T12: -0.1134 REMARK 3 T13: -0.1352 T23: 0.1958 REMARK 3 L TENSOR REMARK 3 L11: 2.6197 L22: 1.0902 REMARK 3 L33: 2.1930 L12: -1.5024 REMARK 3 L13: 1.7937 L23: -1.5591 REMARK 3 S TENSOR REMARK 3 S11: 0.1990 S12: -0.0037 S13: 0.1491 REMARK 3 S21: 0.7467 S22: -0.3702 S23: -1.4842 REMARK 3 S31: 0.3855 S32: 0.5910 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN D AND RESID 108:148) REMARK 3 ORIGIN FOR THE GROUP (A): 40.8612 19.5113 -26.9549 REMARK 3 T TENSOR REMARK 3 T11: 0.4731 T22: 0.3156 REMARK 3 T33: 0.4244 T12: -0.0226 REMARK 3 T13: -0.0063 T23: -0.0339 REMARK 3 L TENSOR REMARK 3 L11: 3.2181 L22: 1.5585 REMARK 3 L33: 1.8486 L12: 0.5474 REMARK 3 L13: -1.6375 L23: 1.3864 REMARK 3 S TENSOR REMARK 3 S11: -0.1160 S12: 0.2988 S13: 0.2406 REMARK 3 S21: 0.0913 S22: 0.0305 S23: -0.0756 REMARK 3 S31: -0.6236 S32: -0.0622 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN D AND RESID 149:234) REMARK 3 ORIGIN FOR THE GROUP (A): 41.2623 18.3516 -28.2180 REMARK 3 T TENSOR REMARK 3 T11: 0.3926 T22: 0.2154 REMARK 3 T33: 0.2612 T12: 0.0086 REMARK 3 T13: -0.0543 T23: -0.0331 REMARK 3 L TENSOR REMARK 3 L11: 4.9341 L22: 0.9962 REMARK 3 L33: 4.0880 L12: 0.8848 REMARK 3 L13: -0.2583 L23: -0.6586 REMARK 3 S TENSOR REMARK 3 S11: -0.1384 S12: 0.1541 S13: -0.3803 REMARK 3 S21: -0.3405 S22: 0.1066 S23: -0.4723 REMARK 3 S31: -0.2561 S32: 0.2664 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KGO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222098. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14247 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 37.285 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.1 M BIS TRIS REMARK 280 PROPANE/HCL PH 6.5, 0.2 M SODIUM FLUORIDE., VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.78650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.76900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.28450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.76900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.78650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.28450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY D 0 REMARK 465 SER D 1 REMARK 465 HIS D 2 REMARK 465 MET D 3 REMARK 465 THR D 4 REMARK 465 ASN D 193 REMARK 465 ALA D 194 REMARK 465 ASN D 195 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 HIS A 2 REMARK 465 MET A 3 REMARK 465 THR A 4 REMARK 465 SER A 87 REMARK 465 GLY A 88 REMARK 465 VAL A 89 REMARK 465 ASP A 90 REMARK 465 LYS A 91 REMARK 465 GLY A 92 REMARK 465 ASN A 193 REMARK 465 ALA A 194 REMARK 465 ASN A 195 REMARK 465 GLU A 196 REMARK 465 GLU A 197 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL D 89 CG1 CG2 REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE D 33 169.65 178.03 REMARK 500 ASN D 34 -106.46 59.22 REMARK 500 THR D 40 -160.57 -168.07 REMARK 500 ASP D 46 -166.78 -128.21 REMARK 500 PRO D 59 92.44 -49.70 REMARK 500 HIS D 62 134.62 176.98 REMARK 500 LYS D 63 97.00 -68.69 REMARK 500 ARG D 117 -166.24 -124.54 REMARK 500 HIS D 128 -174.43 -63.04 REMARK 500 LEU D 155 -18.11 -44.39 REMARK 500 ALA D 172 -118.71 59.89 REMARK 500 GLU D 197 -1.57 161.17 REMARK 500 SER D 198 101.05 -34.21 REMARK 500 SER D 200 121.72 179.20 REMARK 500 ARG D 232 -109.66 -72.18 REMARK 500 LYS D 233 -74.17 12.01 REMARK 500 GLU A 21 -73.65 -61.46 REMARK 500 ASN A 34 -110.49 40.22 REMARK 500 THR A 40 -159.30 -145.03 REMARK 500 ASP A 46 -149.01 -125.06 REMARK 500 PRO A 59 99.71 -62.11 REMARK 500 ASP A 85 -156.24 -78.36 REMARK 500 LEU A 99 150.59 -49.33 REMARK 500 LEU A 103 131.71 -170.13 REMARK 500 GLU A 119 11.77 -65.32 REMARK 500 SER A 142 -125.52 -132.54 REMARK 500 THR A 150 142.79 -173.93 REMARK 500 ALA A 172 -97.70 55.75 REMARK 500 TYR A 174 5.75 -50.28 REMARK 500 GLU A 199 -168.21 -114.97 REMARK 500 ARG A 218 -75.54 -50.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C2E D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C2E D 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C2E A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C2E A 302 DBREF 5KGO D 3 234 UNP G3FT00 G3FT00_KLEPN 1 232 DBREF 5KGO A 3 234 UNP G3FT00 G3FT00_KLEPN 1 232 SEQADV 5KGO GLY D 0 UNP G3FT00 EXPRESSION TAG SEQADV 5KGO SER D 1 UNP G3FT00 EXPRESSION TAG SEQADV 5KGO HIS D 2 UNP G3FT00 EXPRESSION TAG SEQADV 5KGO ALA D 118 UNP G3FT00 HIS 116 ENGINEERED MUTATION SEQADV 5KGO ASP D 161 UNP G3FT00 ASN 159 ENGINEERED MUTATION SEQADV 5KGO GLY A 0 UNP G3FT00 EXPRESSION TAG SEQADV 5KGO SER A 1 UNP G3FT00 EXPRESSION TAG SEQADV 5KGO HIS A 2 UNP G3FT00 EXPRESSION TAG SEQADV 5KGO ALA A 118 UNP G3FT00 HIS 116 ENGINEERED MUTATION SEQADV 5KGO ASP A 161 UNP G3FT00 ASN 159 ENGINEERED MUTATION SEQRES 1 D 235 GLY SER HIS MET THR GLU GLY THR ILE LYS THR SER LYS SEQRES 2 D 235 TYR GLU ILE ILE ALA ILE PHE ARG GLU GLU LEU ARG LYS SEQRES 3 D 235 ARG THR GLU ILE GLU ILE PHE PHE ASN ASN THR SER ILE SEQRES 4 D 235 ILE THR GLN LEU THR ARG VAL ASP PHE ALA GLU PHE HIS SEQRES 5 D 235 ILE GLN THR HIS ARG LYS ILE PRO SER GLY HIS LYS ILE SEQRES 6 D 235 ARG PHE LEU LEU HIS SER ASP SER GLY LYS ILE GLU PHE SEQRES 7 D 235 ASN ALA ALA LEU THR LYS HIS ASP ASN SER GLY VAL ASP SEQRES 8 D 235 LYS GLY ILE ARG TYR ALA PHE SER LEU PRO GLU CYS LEU SEQRES 9 D 235 GLN VAL VAL GLN ARG ARG ARG ASP PRO ARG PHE ARG LEU SEQRES 10 D 235 ARG ALA GLU HIS ASP PHE TYR CYS ARG GLY ARG HIS LYS SEQRES 11 D 235 ASN GLY GLU ASN TYR LEU PHE ASP ILE LYS ASP ILE SER SEQRES 12 D 235 ASP GLY GLY CYS ALA LEU MET THR LYS THR PRO ASN LEU SEQRES 13 D 235 LYS PHE LEU SER HIS ASP ALA LEU LEU LYS ASN ALA VAL SEQRES 14 D 235 LEU MET LEU ALA GLU TYR GLY GLU ILE THR ILE ASP LEU SEQRES 15 D 235 VAL VAL LYS ASN VAL ILE VAL ILE THR LEU ASP ASN ALA SEQRES 16 D 235 ASN GLU GLU SER GLU SER TYR TYR GLN ILE SER CYS GLN SEQRES 17 D 235 PHE LYS PHE ARG HIS LEU ASP ASP GLN ARG ARG ILE GLU SEQRES 18 D 235 LYS ILE LEU LEU ASP LEU ILE LEU GLU ALA LYS ARG LYS SEQRES 19 D 235 LYS SEQRES 1 A 235 GLY SER HIS MET THR GLU GLY THR ILE LYS THR SER LYS SEQRES 2 A 235 TYR GLU ILE ILE ALA ILE PHE ARG GLU GLU LEU ARG LYS SEQRES 3 A 235 ARG THR GLU ILE GLU ILE PHE PHE ASN ASN THR SER ILE SEQRES 4 A 235 ILE THR GLN LEU THR ARG VAL ASP PHE ALA GLU PHE HIS SEQRES 5 A 235 ILE GLN THR HIS ARG LYS ILE PRO SER GLY HIS LYS ILE SEQRES 6 A 235 ARG PHE LEU LEU HIS SER ASP SER GLY LYS ILE GLU PHE SEQRES 7 A 235 ASN ALA ALA LEU THR LYS HIS ASP ASN SER GLY VAL ASP SEQRES 8 A 235 LYS GLY ILE ARG TYR ALA PHE SER LEU PRO GLU CYS LEU SEQRES 9 A 235 GLN VAL VAL GLN ARG ARG ARG ASP PRO ARG PHE ARG LEU SEQRES 10 A 235 ARG ALA GLU HIS ASP PHE TYR CYS ARG GLY ARG HIS LYS SEQRES 11 A 235 ASN GLY GLU ASN TYR LEU PHE ASP ILE LYS ASP ILE SER SEQRES 12 A 235 ASP GLY GLY CYS ALA LEU MET THR LYS THR PRO ASN LEU SEQRES 13 A 235 LYS PHE LEU SER HIS ASP ALA LEU LEU LYS ASN ALA VAL SEQRES 14 A 235 LEU MET LEU ALA GLU TYR GLY GLU ILE THR ILE ASP LEU SEQRES 15 A 235 VAL VAL LYS ASN VAL ILE VAL ILE THR LEU ASP ASN ALA SEQRES 16 A 235 ASN GLU GLU SER GLU SER TYR TYR GLN ILE SER CYS GLN SEQRES 17 A 235 PHE LYS PHE ARG HIS LEU ASP ASP GLN ARG ARG ILE GLU SEQRES 18 A 235 LYS ILE LEU LEU ASP LEU ILE LEU GLU ALA LYS ARG LYS SEQRES 19 A 235 LYS HET C2E D 301 46 HET C2E D 302 46 HET C2E A 301 46 HET C2E A 302 46 HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETSYN C2E C-DI-GMP; CYCLIC DIGUANOSINE MONOPHOSPHATE FORMUL 3 C2E 4(C20 H24 N10 O14 P2) HELIX 1 AA1 SER D 11 LYS D 25 1 15 HELIX 2 AA2 ASN D 154 LEU D 158 5 5 HELIX 3 AA3 ALA D 172 TYR D 174 5 3 HELIX 4 AA4 LEU D 213 ARG D 232 1 20 HELIX 5 AA5 SER A 11 ARG A 26 1 16 HELIX 6 AA6 ASN A 154 LEU A 158 5 5 HELIX 7 AA7 HIS A 212 LYS A 234 1 23 SHEET 1 AA1 9 THR D 7 LYS D 9 0 SHEET 2 AA1 9 LEU D 103 VAL D 106 -1 O VAL D 105 N THR D 7 SHEET 3 AA1 9 GLY D 73 ASP D 85 -1 N LYS D 74 O VAL D 106 SHEET 4 AA1 9 ILE D 93 SER D 98 -1 O ALA D 96 N THR D 82 SHEET 5 AA1 9 GLU D 49 THR D 54 -1 N PHE D 50 O PHE D 97 SHEET 6 AA1 9 SER D 37 VAL D 45 -1 N ARG D 44 O HIS D 51 SHEET 7 AA1 9 GLU D 28 PHE D 32 -1 N ILE D 29 O THR D 40 SHEET 8 AA1 9 LYS D 63 SER D 70 -1 O LEU D 67 N GLU D 30 SHEET 9 AA1 9 GLY D 73 ASP D 85 -1 O PHE D 77 N PHE D 66 SHEET 1 AA2 8 PHE D 114 ARG D 115 0 SHEET 2 AA2 8 ASN D 133 ILE D 141 -1 O ILE D 141 N PHE D 114 SHEET 3 AA2 8 GLY D 145 THR D 150 -1 O ALA D 147 N LYS D 139 SHEET 4 AA2 8 TYR D 201 LYS D 209 -1 O TYR D 202 N THR D 150 SHEET 5 AA2 8 GLU D 176 ILE D 189 -1 N LYS D 184 O SER D 205 SHEET 6 AA2 8 LEU D 163 MET D 170 -1 N LEU D 169 O ILE D 177 SHEET 7 AA2 8 TYR D 123 ARG D 127 -1 N TYR D 123 O MET D 170 SHEET 8 AA2 8 ASN D 133 ILE D 141 -1 O PHE D 136 N CYS D 124 SHEET 1 AA3 6 THR A 7 ILE A 8 0 SHEET 2 AA3 6 GLN A 104 VAL A 106 -1 O VAL A 105 N THR A 7 SHEET 3 AA3 6 GLY A 73 HIS A 84 -1 N LYS A 74 O VAL A 106 SHEET 4 AA3 6 LYS A 63 SER A 70 -1 N ILE A 64 O ALA A 79 SHEET 5 AA3 6 GLU A 28 PHE A 33 -1 N GLU A 28 O HIS A 69 SHEET 6 AA3 6 THR A 36 GLN A 41 -1 O THR A 36 N PHE A 33 SHEET 1 AA4 6 THR A 7 ILE A 8 0 SHEET 2 AA4 6 GLN A 104 VAL A 106 -1 O VAL A 105 N THR A 7 SHEET 3 AA4 6 GLY A 73 HIS A 84 -1 N LYS A 74 O VAL A 106 SHEET 4 AA4 6 TYR A 95 SER A 98 -1 O ALA A 96 N THR A 82 SHEET 5 AA4 6 GLU A 49 HIS A 51 -1 N PHE A 50 O PHE A 97 SHEET 6 AA4 6 ARG A 44 VAL A 45 -1 N ARG A 44 O HIS A 51 SHEET 1 AA5 8 PHE A 114 ARG A 115 0 SHEET 2 AA5 8 ASN A 133 ILE A 141 -1 O ILE A 141 N PHE A 114 SHEET 3 AA5 8 GLY A 145 THR A 150 -1 O ALA A 147 N ASP A 140 SHEET 4 AA5 8 GLU A 199 LYS A 209 -1 O ILE A 204 N LEU A 148 SHEET 5 AA5 8 GLU A 176 LEU A 191 -1 N ASN A 185 O SER A 205 SHEET 6 AA5 8 ALA A 162 MET A 170 -1 N LEU A 169 O ILE A 177 SHEET 7 AA5 8 TYR A 123 ARG A 127 -1 N ARG A 125 O VAL A 168 SHEET 8 AA5 8 ASN A 133 ILE A 141 -1 O PHE A 136 N CYS A 124 SITE 1 AC1 11 LEU D 67 HIS D 69 GLY D 73 LYS D 74 SITE 2 AC1 11 ARG D 108 ARG D 109 ARG D 113 ASN D 185 SITE 3 AC1 11 GLN D 203 SER D 205 C2E D 302 SITE 1 AC2 14 ARG D 108 ARG D 109 ARG D 110 ARG D 113 SITE 2 AC2 14 ASP D 140 SER D 142 GLY D 145 CYS D 146 SITE 3 AC2 14 ALA D 147 LYS D 184 SER D 205 CYS D 206 SITE 4 AC2 14 GLN D 207 C2E D 301 SITE 1 AC3 13 ARG A 108 ARG A 109 ARG A 110 ARG A 113 SITE 2 AC3 13 ASP A 140 SER A 142 GLY A 144 GLY A 145 SITE 3 AC3 13 LYS A 184 SER A 205 CYS A 206 GLN A 207 SITE 4 AC3 13 C2E A 302 SITE 1 AC4 12 HIS A 69 ASP A 71 GLY A 73 LYS A 74 SITE 2 AC4 12 GLN A 107 ARG A 108 ARG A 109 ARG A 113 SITE 3 AC4 12 LYS A 184 ASN A 185 SER A 205 C2E A 301 CRYST1 65.573 74.569 135.538 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015250 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013410 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007378 0.00000