HEADER UNKNOWN FUNCTION 13-JUN-16 5KGQ TITLE NMR STRUCTURE AND DYNAMICS OF Q4DY78, A CONSERVED KINETOPLASID- TITLE 2 SPECIFIC PROTEIN FROM TRYPANOSOMA CRUZI COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI; SOURCE 3 ORGANISM_TAXID: 5693; SOURCE 4 STRAIN: CL BRENER; SOURCE 5 GENE: TC00.1047053511907.89; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) STAR; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-4T2 KEYWDS HYPOTHETICAL PROTEIN, CONSERVED, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR E.D.D'ANDREA,J.S.RETEL,A.DIEHL,P.SCHMIEDER,H.OSCHKINAT,J.R.PIRES REVDAT 4 14-JUN-23 5KGQ 1 REMARK REVDAT 3 08-JAN-20 5KGQ 1 REMARK REVDAT 2 17-APR-19 5KGQ 1 REMARK REVDAT 1 05-JUL-17 5KGQ 0 JRNL AUTH E.D.D'ANDREA,J.S.RETEL,A.DIEHL,P.SCHMIEDER,H.OSCHKINAT, JRNL AUTH 2 J.R.PIRES JRNL TITL NMR STRUCTURE AND DYNAMICS OF Q4DY78, A CONSERVED JRNL TITL 2 KINETOPLASID-SPECIFIC PROTEIN FROM TRYPANOSOMA CRUZI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.21 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES ARE BASED ON A TOTAL OF 2387 REMARK 3 RESTRAINTS, 2171 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 144 REMARK 3 DIHEDRAL ANGLE RESTRAINTS, 72 DISTANCE RESTRAINTS FROM HYDROGEN REMARK 3 BONDS REMARK 4 REMARK 4 5KGQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222036. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298; 298 REMARK 210 PH : 7.4; 7.4; 7.4 REMARK 210 IONIC STRENGTH : 10 MM NA2HPO4, 1.8 MM KH2PO4, REMARK 210 140 MM NACL, 2.7 MM KCL; 10 MM REMARK 210 NA2HPO4, 1.8 MM KH2PO4, 140 MM REMARK 210 NACL, 2.7 MM KCL; 10 MM NA2HPO4, REMARK 210 1.8 MM KH2PO4, 140 MM NACL, 2.7 REMARK 210 MM KCL REMARK 210 PRESSURE : 1 ATM; 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 0.4 MM UNLABELED Q4DY78, 90% REMARK 210 H2O/10% D2O; 0.3 MM [U-100% 15N] REMARK 210 Q4DY78, 90% H2O/10% D2O; 0.8 MM REMARK 210 [U-100% 13C; U-100% 15N] Q4DY78, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D 1H-15N TOCSY; 3D REMARK 210 HCCH-COSY; 3D HCCH-TOCSY; 3D REMARK 210 HNCO; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.1, SPARKY 3.114, ARIA REMARK 210 2.3 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 8 -125.11 -144.63 REMARK 500 1 LYS A 9 48.84 -79.72 REMARK 500 1 ALA A 62 -87.88 61.15 REMARK 500 1 GLU A 94 15.38 51.38 REMARK 500 1 LYS A 97 79.99 -174.00 REMARK 500 1 GLU A 100 -65.67 -141.04 REMARK 500 1 ALA A 103 -72.07 -142.38 REMARK 500 2 VAL A 8 -110.14 -140.51 REMARK 500 2 LYS A 9 41.44 -78.99 REMARK 500 2 ALA A 62 -107.74 59.53 REMARK 500 2 ALA A 63 -72.00 -94.99 REMARK 500 2 GLU A 100 78.20 53.03 REMARK 500 2 ASP A 102 -14.04 78.62 REMARK 500 2 LEU A 104 -19.82 168.23 REMARK 500 2 THR A 108 -173.70 54.07 REMARK 500 2 GLN A 109 -163.07 -169.83 REMARK 500 3 MET A 7 108.82 64.92 REMARK 500 3 VAL A 8 -112.51 -106.52 REMARK 500 3 LYS A 9 23.93 -79.00 REMARK 500 3 LYS A 58 158.09 -44.29 REMARK 500 3 ALA A 62 -93.15 58.42 REMARK 500 3 ALA A 63 -62.91 -100.85 REMARK 500 3 GLU A 96 -69.12 -147.88 REMARK 500 3 LYS A 97 -45.91 -151.05 REMARK 500 3 GLU A 100 -98.15 -118.43 REMARK 500 3 LEU A 104 -2.22 71.36 REMARK 500 3 GLU A 105 -169.00 64.87 REMARK 500 3 LEU A 106 -162.77 62.23 REMARK 500 4 ALA A 3 -79.38 -116.36 REMARK 500 4 VAL A 8 -138.85 -140.85 REMARK 500 4 LYS A 9 37.30 -82.97 REMARK 500 4 ALA A 26 -70.15 -70.71 REMARK 500 4 GLN A 29 -164.90 -75.01 REMARK 500 4 ALA A 62 -101.78 59.14 REMARK 500 4 ALA A 76 5.77 -68.22 REMARK 500 4 GLU A 95 161.87 63.15 REMARK 500 4 LYS A 97 -56.83 -135.46 REMARK 500 4 GLU A 100 71.07 42.50 REMARK 500 4 ILE A 101 -62.55 -97.05 REMARK 500 4 ASP A 102 -49.57 -157.35 REMARK 500 4 ALA A 103 -82.01 -52.81 REMARK 500 4 LEU A 104 -70.24 -144.99 REMARK 500 4 LEU A 106 174.21 64.87 REMARK 500 4 GLN A 109 -77.47 69.89 REMARK 500 5 SER A 2 52.37 -109.50 REMARK 500 5 MET A 4 -78.13 -155.73 REMARK 500 5 VAL A 8 -118.84 -138.04 REMARK 500 5 LYS A 9 49.73 -81.50 REMARK 500 5 ALA A 26 -70.61 -73.66 REMARK 500 5 GLN A 29 -167.46 -74.45 REMARK 500 REMARK 500 THIS ENTRY HAS 240 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26025 RELATED DB: BMRB REMARK 900 1H, 13C, AND 15N CHEMICAL SHIFT ASSIGNMENTS FOR Q4DY78 DBREF 5KGQ A 7 112 UNP Q4DY78 Q4DY78_TRYCC 1 106 SEQADV 5KGQ GLY A 1 UNP Q4DY78 EXPRESSION TAG SEQADV 5KGQ SER A 2 UNP Q4DY78 EXPRESSION TAG SEQADV 5KGQ ALA A 3 UNP Q4DY78 EXPRESSION TAG SEQADV 5KGQ MET A 4 UNP Q4DY78 EXPRESSION TAG SEQADV 5KGQ GLY A 5 UNP Q4DY78 EXPRESSION TAG SEQADV 5KGQ HIS A 6 UNP Q4DY78 EXPRESSION TAG SEQRES 1 A 112 GLY SER ALA MET GLY HIS MET VAL LYS ILE SER HIS GLU SEQRES 2 A 112 ASP THR GLN ARG ILE LYS THR ALA PHE LEU SER TYR ALA SEQRES 3 A 112 GLN GLY GLN ASP LYS VAL THR GLU ALA MET ILE ASP GLN SEQRES 4 A 112 LEU ILE CYS GLY ALA PHE PRO GLY LEU SER TRP GLU GLN SEQRES 5 A 112 LEU GLN GLU LYS LYS LYS GLY ARG ALA ALA ALA ASN GLY SEQRES 6 A 112 TYR ASP ARG SER ALA PHE PHE SER LEU VAL ALA SER ASP SEQRES 7 A 112 GLU GLN TYR VAL ARG PHE ILE ALA GLN HIS PHE PRO CYS SEQRES 8 A 112 ALA PRO GLU GLU GLU LYS PRO PRO GLU ILE ASP ALA LEU SEQRES 9 A 112 GLU LEU LYS THR GLN LYS GLY PHE HELIX 1 AA1 SER A 11 GLN A 27 1 17 HELIX 2 AA2 THR A 33 PHE A 45 1 13 HELIX 3 AA3 SER A 49 LYS A 57 1 9 HELIX 4 AA4 ARG A 68 ALA A 76 1 9 HELIX 5 AA5 ASP A 78 PHE A 89 1 12 SHEET 1 AA1 2 LYS A 31 VAL A 32 0 SHEET 2 AA1 2 TYR A 66 ASP A 67 -1 O TYR A 66 N VAL A 32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1