HEADER TRANSFERASE/TRANSFERASE INHIBITOR 14-JUN-16 5KH5 TITLE CRYSTAL STRUCTURE OF STEPTOCOCCUS PNEUMONIAE UNDECAPRENYL TITLE 2 PYROPHOSPHATE SYNTHASE (UPPS) IN COMPLEX WITH ~{N}-(3-AZANYL-3- TITLE 3 OXIDANYLIDENE-PROPYL)-5-(1-BENZOTHIOPHEN-5-YL)-1-(PHENYLMETHYL)-~{N}- TITLE 4 [(4-PROPAN-2-YLOXYPHENYL)METHYL]PYRAZOLE-4-CARBOXAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPRENYL TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.5.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE SEROTYPE 4 (STRAIN SOURCE 3 ATCC BAA-334 / TIGR4); SOURCE 4 ORGANISM_TAXID: 170187; SOURCE 5 STRAIN: ATCC BAA-334 / TIGR4; SOURCE 6 GENE: UPPS, SP_0261; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UPPS, NATIVE, BACTERIAL, UNDECAPRENYL S. PNEUMONIAE, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.O.CONCHA REVDAT 3 06-MAR-24 5KH5 1 JRNL REMARK REVDAT 2 24-AUG-16 5KH5 1 JRNL REVDAT 1 20-JUL-16 5KH5 0 JRNL AUTH N.CONCHA,J.HUANG,X.BAI,A.BENOWITZ,P.BRADY,L.C.GRADY, JRNL AUTH 2 L.H.KRYN,D.HOLMES,K.INGRAHAM,Q.JIN,L.POTHIER KAUSHANSKY, JRNL AUTH 3 L.MCCLOSKEY,J.A.MESSER,H.O'KEEFE,A.PATEL,A.L.SATZ, JRNL AUTH 4 R.H.SINNAMON,J.SCHNECK,S.R.SKINNER,J.SUMMERFIELD,A.TAYLOR, JRNL AUTH 5 J.D.TAYLOR,G.EVINDAR,R.A.STAVENGER JRNL TITL DISCOVERY AND CHARACTERIZATION OF A CLASS OF PYRAZOLE JRNL TITL 2 INHIBITORS OF BACTERIAL UNDECAPRENYL PYROPHOSPHATE SYNTHASE. JRNL REF J.MED.CHEM. V. 59 7299 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 27379833 JRNL DOI 10.1021/ACS.JMEDCHEM.6B00746 REMARK 2 REMARK 2 RESOLUTION. 2.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 18074 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 979 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.70 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1240 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3545 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 48 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.97000 REMARK 3 B22 (A**2) : -0.96000 REMARK 3 B33 (A**2) : -1.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.653 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.330 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.270 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.980 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.919 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3662 ; 0.005 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2388 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4974 ; 0.863 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5850 ; 0.754 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 451 ; 4.815 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;34.514 ;25.207 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 604 ;12.052 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ; 9.229 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 553 ; 0.045 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4141 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 696 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2260 ; 0.321 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 915 ; 0.030 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3619 ; 0.589 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1402 ; 0.479 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1355 ; 0.797 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 248 REMARK 3 ORIGIN FOR THE GROUP (A): -15.6780 -13.9470 -31.9550 REMARK 3 T TENSOR REMARK 3 T11: 0.3271 T22: 0.1194 REMARK 3 T33: 0.2496 T12: -0.1175 REMARK 3 T13: 0.0370 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 1.9586 L22: 3.8962 REMARK 3 L33: 4.8807 L12: 0.0108 REMARK 3 L13: -0.2266 L23: -0.3325 REMARK 3 S TENSOR REMARK 3 S11: -0.0287 S12: 0.3349 S13: -0.0119 REMARK 3 S21: -0.3415 S22: 0.1725 S23: -0.0124 REMARK 3 S31: 0.9365 S32: -0.1925 S33: -0.1438 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 17 B 246 REMARK 3 ORIGIN FOR THE GROUP (A): -3.8980 9.1240 -16.1350 REMARK 3 T TENSOR REMARK 3 T11: 0.3374 T22: 0.2486 REMARK 3 T33: 0.2035 T12: -0.2611 REMARK 3 T13: -0.0525 T23: 0.0410 REMARK 3 L TENSOR REMARK 3 L11: 2.2392 L22: 4.1040 REMARK 3 L33: 6.2894 L12: 1.3516 REMARK 3 L13: -0.7754 L23: -2.5527 REMARK 3 S TENSOR REMARK 3 S11: 0.3298 S12: -0.3026 S13: -0.0930 REMARK 3 S21: 0.8204 S22: -0.3743 S23: -0.1068 REMARK 3 S31: -1.0970 S32: 0.8934 S33: 0.0445 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5KH5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222207. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17199 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.3 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CACODYLATE, PH 6.4, 0.12 REMARK 280 -0.24M SODIUM ACETATE. CRYSTALS WERE SOAKED OVERNIGHT IN MOTHER REMARK 280 LIQUOR CONTAINING 5-10MM INHIBITOR, VAPOR DIFFUSION, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.72550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.84650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.95550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.84650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.72550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.95550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.72550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.95550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 89.84650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.95550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.72550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 89.84650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 GLY A 3 REMARK 465 PHE A 4 REMARK 465 PHE A 5 REMARK 465 LYS A 6 REMARK 465 LYS A 7 REMARK 465 ASP A 8 REMARK 465 LYS A 9 REMARK 465 ALA A 10 REMARK 465 VAL A 11 REMARK 465 GLU A 12 REMARK 465 VAL A 13 REMARK 465 GLU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 TRP A 77 REMARK 465 THR A 78 REMARK 465 PHE A 249 REMARK 465 GLY A 250 REMARK 465 GLY A 251 REMARK 465 VAL A 252 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 GLY B 3 REMARK 465 PHE B 4 REMARK 465 PHE B 5 REMARK 465 LYS B 6 REMARK 465 LYS B 7 REMARK 465 ASP B 8 REMARK 465 LYS B 9 REMARK 465 ALA B 10 REMARK 465 VAL B 11 REMARK 465 GLU B 12 REMARK 465 VAL B 13 REMARK 465 GLU B 14 REMARK 465 VAL B 15 REMARK 465 PRO B 16 REMARK 465 SER B 73 REMARK 465 THR B 74 REMARK 465 GLU B 75 REMARK 465 ASN B 76 REMARK 465 TRP B 77 REMARK 465 ARG B 247 REMARK 465 ARG B 248 REMARK 465 PHE B 249 REMARK 465 GLY B 250 REMARK 465 GLY B 251 REMARK 465 VAL B 252 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 17 OG1 CG2 REMARK 470 ARG A 41 CG CD NE CZ NH1 NH2 REMARK 470 SER A 73 OG REMARK 470 THR A 74 OG1 CG2 REMARK 470 GLU A 75 CG CD OE1 OE2 REMARK 470 ASN A 76 CG OD1 ND2 REMARK 470 ARG A 79 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 116 CG OD1 OD2 REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 244 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 246 CB CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 247 CB CG CD NE CZ NH1 NH2 REMARK 470 ARG A 248 CB CG CD NE CZ NH1 NH2 REMARK 470 THR B 17 CB OG1 CG2 REMARK 470 LYS B 35 CD CE NZ REMARK 470 PHE B 72 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR B 78 OG1 CG2 REMARK 470 ARG B 79 CG CD NE CZ NH1 NH2 REMARK 470 PRO B 80 CG CD REMARK 470 GLU B 83 CG CD OE1 OE2 REMARK 470 LYS B 85 CG CD CE NZ REMARK 470 PHE B 86 CG CD1 CD2 CE1 CE2 CZ REMARK 470 MET B 88 CG SD CE REMARK 470 ARG B 117 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 145 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 75 46.98 -97.31 REMARK 500 VAL A 84 22.18 -76.05 REMARK 500 TYR B 98 -42.29 -131.95 REMARK 500 LEU B 205 74.72 -105.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6TC B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KH4 RELATED DB: PDB REMARK 900 RELATED ID: 5KH2 RELATED DB: PDB DBREF 5KH5 A 1 252 UNP Q97SR4 ISPT_STRPN 1 252 DBREF 5KH5 B 1 252 UNP Q97SR4 ISPT_STRPN 1 252 SEQADV 5KH5 MET A -19 UNP Q97SR4 INITIATING METHIONINE SEQADV 5KH5 GLY A -18 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 SER A -17 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 SER A -16 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 HIS A -15 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 HIS A -14 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 HIS A -13 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 HIS A -12 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 HIS A -11 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 HIS A -10 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 SER A -9 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 SER A -8 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 GLY A -7 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 LEU A -6 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 VAL A -5 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 PRO A -4 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 ARG A -3 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 GLY A -2 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 SER A -1 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 HIS A 0 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 MET B -19 UNP Q97SR4 INITIATING METHIONINE SEQADV 5KH5 GLY B -18 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 SER B -17 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 SER B -16 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 HIS B -15 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 HIS B -14 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 HIS B -13 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 HIS B -12 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 HIS B -11 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 HIS B -10 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 SER B -9 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 SER B -8 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 GLY B -7 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 LEU B -6 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 VAL B -5 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 PRO B -4 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 ARG B -3 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 GLY B -2 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 SER B -1 UNP Q97SR4 EXPRESSION TAG SEQADV 5KH5 HIS B 0 UNP Q97SR4 EXPRESSION TAG SEQRES 1 A 272 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 272 LEU VAL PRO ARG GLY SER HIS MET PHE GLY PHE PHE LYS SEQRES 3 A 272 LYS ASP LYS ALA VAL GLU VAL GLU VAL PRO THR GLN VAL SEQRES 4 A 272 PRO ALA HIS ILE GLY ILE ILE MET ASP GLY ASN GLY ARG SEQRES 5 A 272 TRP ALA LYS LYS ARG MET GLN PRO ARG VAL PHE GLY HIS SEQRES 6 A 272 LYS ALA GLY MET GLU ALA LEU GLN THR VAL THR LYS ALA SEQRES 7 A 272 ALA ASN LYS LEU GLY VAL LYS VAL ILE THR VAL TYR ALA SEQRES 8 A 272 PHE SER THR GLU ASN TRP THR ARG PRO ASP GLN GLU VAL SEQRES 9 A 272 LYS PHE ILE MET ASN LEU PRO VAL GLU PHE TYR ASP ASN SEQRES 10 A 272 TYR VAL PRO GLU LEU HIS ALA ASN ASN VAL LYS ILE GLN SEQRES 11 A 272 MET ILE GLY GLU THR ASP ARG LEU PRO LYS GLN THR PHE SEQRES 12 A 272 GLU ALA LEU THR LYS ALA GLU GLU LEU THR LYS ASN ASN SEQRES 13 A 272 THR GLY LEU ILE LEU ASN PHE ALA LEU ASN TYR GLY GLY SEQRES 14 A 272 ARG ALA GLU ILE THR GLN ALA LEU LYS LEU ILE SER GLN SEQRES 15 A 272 ASP VAL LEU ASP ALA LYS ILE ASN PRO GLY ASP ILE THR SEQRES 16 A 272 GLU GLU LEU ILE GLY ASN TYR LEU PHE THR GLN HIS LEU SEQRES 17 A 272 PRO LYS ASP LEU ARG ASP PRO ASP LEU ILE ILE ARG THR SEQRES 18 A 272 SER GLY GLU LEU ARG LEU SER ASN PHE LEU PRO TRP GLN SEQRES 19 A 272 GLY ALA TYR SER GLU LEU TYR PHE THR ASP THR LEU TRP SEQRES 20 A 272 PRO ASP PHE ASP GLU ALA ALA LEU GLN GLU ALA ILE LEU SEQRES 21 A 272 ALA TYR ASN ARG ARG HIS ARG ARG PHE GLY GLY VAL SEQRES 1 B 272 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 272 LEU VAL PRO ARG GLY SER HIS MET PHE GLY PHE PHE LYS SEQRES 3 B 272 LYS ASP LYS ALA VAL GLU VAL GLU VAL PRO THR GLN VAL SEQRES 4 B 272 PRO ALA HIS ILE GLY ILE ILE MET ASP GLY ASN GLY ARG SEQRES 5 B 272 TRP ALA LYS LYS ARG MET GLN PRO ARG VAL PHE GLY HIS SEQRES 6 B 272 LYS ALA GLY MET GLU ALA LEU GLN THR VAL THR LYS ALA SEQRES 7 B 272 ALA ASN LYS LEU GLY VAL LYS VAL ILE THR VAL TYR ALA SEQRES 8 B 272 PHE SER THR GLU ASN TRP THR ARG PRO ASP GLN GLU VAL SEQRES 9 B 272 LYS PHE ILE MET ASN LEU PRO VAL GLU PHE TYR ASP ASN SEQRES 10 B 272 TYR VAL PRO GLU LEU HIS ALA ASN ASN VAL LYS ILE GLN SEQRES 11 B 272 MET ILE GLY GLU THR ASP ARG LEU PRO LYS GLN THR PHE SEQRES 12 B 272 GLU ALA LEU THR LYS ALA GLU GLU LEU THR LYS ASN ASN SEQRES 13 B 272 THR GLY LEU ILE LEU ASN PHE ALA LEU ASN TYR GLY GLY SEQRES 14 B 272 ARG ALA GLU ILE THR GLN ALA LEU LYS LEU ILE SER GLN SEQRES 15 B 272 ASP VAL LEU ASP ALA LYS ILE ASN PRO GLY ASP ILE THR SEQRES 16 B 272 GLU GLU LEU ILE GLY ASN TYR LEU PHE THR GLN HIS LEU SEQRES 17 B 272 PRO LYS ASP LEU ARG ASP PRO ASP LEU ILE ILE ARG THR SEQRES 18 B 272 SER GLY GLU LEU ARG LEU SER ASN PHE LEU PRO TRP GLN SEQRES 19 B 272 GLY ALA TYR SER GLU LEU TYR PHE THR ASP THR LEU TRP SEQRES 20 B 272 PRO ASP PHE ASP GLU ALA ALA LEU GLN GLU ALA ILE LEU SEQRES 21 B 272 ALA TYR ASN ARG ARG HIS ARG ARG PHE GLY GLY VAL HET 6TC B 301 40 HETNAM 6TC ~{N}-(3-AZANYL-3-OXIDANYLIDENE-PROPYL)-5-(1- HETNAM 2 6TC BENZOTHIOPHEN-5-YL)-1-(PHENYLMETHYL)-~{N}-[(4-PROPAN- HETNAM 3 6TC 2-YLOXYPHENYL)METHYL]PYRAZOLE-4-CARBOXAMIDE FORMUL 3 6TC C32 H32 N4 O3 S FORMUL 4 HOH *48(H2 O) HELIX 1 AA1 GLY A 29 ARG A 37 1 9 HELIX 2 AA2 PRO A 40 GLY A 63 1 24 HELIX 3 AA3 PRO A 80 ILE A 87 1 8 HELIX 4 AA4 ASN A 89 TYR A 98 1 10 HELIX 5 AA5 TYR A 98 ASN A 105 1 8 HELIX 6 AA6 PRO A 119 LYS A 134 1 16 HELIX 7 AA7 GLY A 148 ASP A 166 1 19 HELIX 8 AA8 ASN A 170 ILE A 174 5 5 HELIX 9 AA9 THR A 175 LEU A 183 1 9 HELIX 10 AB1 PHE A 184 LEU A 188 5 5 HELIX 11 AB2 PRO A 189 ARG A 193 5 5 HELIX 12 AB3 LEU A 226 PHE A 230 5 5 HELIX 13 AB4 ASP A 231 ARG A 248 1 18 HELIX 14 AB5 GLY B 29 ARG B 37 1 9 HELIX 15 AB6 PRO B 40 GLY B 63 1 24 HELIX 16 AB7 PRO B 80 ASN B 89 1 10 HELIX 17 AB8 ASN B 89 TYR B 98 1 10 HELIX 18 AB9 TYR B 98 ASN B 105 1 8 HELIX 19 AC1 GLU B 114 LEU B 118 5 5 HELIX 20 AC2 PRO B 119 LYS B 134 1 16 HELIX 21 AC3 GLY B 148 ASP B 166 1 19 HELIX 22 AC4 ASN B 170 ILE B 174 5 5 HELIX 23 AC5 THR B 175 LEU B 183 1 9 HELIX 24 AC6 PHE B 184 LEU B 188 5 5 HELIX 25 AC7 PRO B 189 ARG B 193 5 5 HELIX 26 AC8 LEU B 226 PHE B 230 5 5 HELIX 27 AC9 ASP B 231 ARG B 245 1 15 SHEET 1 AA1 6 LYS A 108 ILE A 112 0 SHEET 2 AA1 6 ILE A 140 ALA A 144 1 O PHE A 143 N GLN A 110 SHEET 3 AA1 6 VAL A 66 TYR A 70 1 N ILE A 67 O ASN A 142 SHEET 4 AA1 6 HIS A 22 ILE A 26 1 N ILE A 25 O THR A 68 SHEET 5 AA1 6 LEU A 197 ARG A 200 1 O ILE A 199 N GLY A 24 SHEET 6 AA1 6 GLU A 219 PHE A 222 1 O TYR A 221 N ILE A 198 SHEET 1 AA2 6 LYS B 108 ILE B 112 0 SHEET 2 AA2 6 ILE B 140 ALA B 144 1 O PHE B 143 N ILE B 112 SHEET 3 AA2 6 VAL B 66 ALA B 71 1 N ILE B 67 O ASN B 142 SHEET 4 AA2 6 HIS B 22 MET B 27 1 N ILE B 25 O THR B 68 SHEET 5 AA2 6 LEU B 197 ARG B 200 1 O LEU B 197 N GLY B 24 SHEET 6 AA2 6 GLU B 219 PHE B 222 1 O TYR B 221 N ARG B 200 SITE 1 AC1 12 MET B 27 ASN B 30 HIS B 45 ALA B 71 SITE 2 AC1 12 ILE B 87 LEU B 90 PRO B 91 PHE B 94 SITE 3 AC1 12 LEU B 118 LEU B 126 PHE B 143 TRP B 227 CRYST1 59.451 117.911 179.693 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016821 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008481 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005565 0.00000