HEADER DNA BINDING PROTEIN 14-JUN-16 5KHD TITLE STRUCTURE OF 1.75 A BLDD C-DOMAIN-C-DI-GMP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-BINDING PROTEIN; COMPND 3 CHAIN: R, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES VENEZUELAE; SOURCE 3 ORGANISM_TAXID: 953739; SOURCE 4 STRAIN: ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 SOURCE 5 / PD 04745; SOURCE 6 GENE: SVEN_1089; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BLDD, STREPTOMYCES, C-DI-GMP, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.SCHUMACHER REVDAT 3 06-MAR-24 5KHD 1 HETSYN REVDAT 2 22-NOV-17 5KHD 1 REMARK REVDAT 1 29-JUN-16 5KHD 0 JRNL AUTH N.TSCHOWRI,M.A.SCHUMACHER,S.SCHLIMPERT,N.B.CHINNAM, JRNL AUTH 2 K.C.FINDLAY,R.G.BRENNAN,M.J.BUTTNER JRNL TITL TETRAMERIC C-DI-GMP MEDIATES EFFECTIVE TRANSCRIPTION FACTOR JRNL TITL 2 DIMERIZATION TO CONTROL STREPTOMYCES DEVELOPMENT. JRNL REF CELL V. 158 1136 2014 JRNL REFN ISSN 1097-4172 JRNL PMID 25171413 JRNL DOI 10.1016/J.CELL.2014.07.022 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 17238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.9803 - 3.7678 0.96 1647 183 0.1839 0.1721 REMARK 3 2 3.7678 - 2.9917 1.00 1609 179 0.1585 0.1677 REMARK 3 3 2.9917 - 2.6138 1.00 1618 179 0.1892 0.1798 REMARK 3 4 2.6138 - 2.3750 0.99 1580 175 0.1754 0.1922 REMARK 3 5 2.3750 - 2.2048 0.99 1581 177 0.1773 0.1802 REMARK 3 6 2.2048 - 2.0749 0.98 1557 173 0.1870 0.2092 REMARK 3 7 2.0749 - 1.9710 0.98 1554 173 0.2076 0.2028 REMARK 3 8 1.9710 - 1.8852 0.98 1547 171 0.2095 0.2398 REMARK 3 9 1.8852 - 1.8127 0.98 1546 172 0.2390 0.2319 REMARK 3 10 1.8127 - 1.7501 0.81 1275 142 0.2530 0.2711 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.53 REMARK 3 K_SOL : 0.46 REMARK 3 B_SOL : 59.56 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.49700 REMARK 3 B22 (A**2) : 1.29790 REMARK 3 B33 (A**2) : -9.79490 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.036 1362 REMARK 3 ANGLE : 3.138 1895 REMARK 3 CHIRALITY : 0.635 225 REMARK 3 PLANARITY : 0.008 209 REMARK 3 DIHEDRAL : 48.479 684 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 84:110) REMARK 3 ORIGIN FOR THE GROUP (A): -21.7594 -20.4805 -2.7526 REMARK 3 T TENSOR REMARK 3 T11: 0.1413 T22: 0.1913 REMARK 3 T33: 0.1871 T12: -0.0394 REMARK 3 T13: 0.0080 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.2328 L22: 0.1544 REMARK 3 L33: 0.1129 L12: 0.0642 REMARK 3 L13: 0.0923 L23: -0.0302 REMARK 3 S TENSOR REMARK 3 S11: -0.0390 S12: 0.0661 S13: 0.0226 REMARK 3 S21: -0.0461 S22: 0.1175 S23: -0.0081 REMARK 3 S31: 0.2106 S32: -0.0488 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 111:125) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2955 -15.8547 5.4338 REMARK 3 T TENSOR REMARK 3 T11: 0.1534 T22: 0.1837 REMARK 3 T33: 0.2179 T12: -0.0010 REMARK 3 T13: 0.0300 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 0.1142 L22: 0.0016 REMARK 3 L33: -0.0066 L12: -0.1017 REMARK 3 L13: 0.0477 L23: -0.0111 REMARK 3 S TENSOR REMARK 3 S11: -0.0747 S12: 0.0617 S13: -0.1094 REMARK 3 S21: -0.2171 S22: 0.0233 S23: -0.0751 REMARK 3 S31: 0.1567 S32: -0.1119 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 126:137) REMARK 3 ORIGIN FOR THE GROUP (A): -24.0335 -8.6990 -7.1484 REMARK 3 T TENSOR REMARK 3 T11: 0.1590 T22: 0.2158 REMARK 3 T33: 0.1980 T12: -0.0381 REMARK 3 T13: -0.0051 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.0278 L22: 0.0440 REMARK 3 L33: 0.0616 L12: 0.0297 REMARK 3 L13: 0.0161 L23: -0.0569 REMARK 3 S TENSOR REMARK 3 S11: -0.0255 S12: -0.0630 S13: 0.3113 REMARK 3 S21: -0.2895 S22: 0.0751 S23: -0.2662 REMARK 3 S31: -0.1141 S32: 0.0981 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 138:155) REMARK 3 ORIGIN FOR THE GROUP (A): -31.7430 -16.1615 -4.5072 REMARK 3 T TENSOR REMARK 3 T11: 0.2081 T22: 0.2356 REMARK 3 T33: 0.2764 T12: -0.0478 REMARK 3 T13: 0.0201 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.1317 L22: 0.0852 REMARK 3 L33: -0.0128 L12: 0.0674 REMARK 3 L13: 0.0064 L23: -0.0377 REMARK 3 S TENSOR REMARK 3 S11: 0.0649 S12: -0.1057 S13: 0.0408 REMARK 3 S21: 0.0447 S22: 0.0452 S23: 0.2334 REMARK 3 S31: 0.0288 S32: -0.0120 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN R AND RESID 83:99) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9703 3.2369 22.4312 REMARK 3 T TENSOR REMARK 3 T11: 0.4586 T22: 0.2301 REMARK 3 T33: 0.2304 T12: -0.0613 REMARK 3 T13: -0.0840 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.2671 L22: 0.0481 REMARK 3 L33: 0.0198 L12: 0.0972 REMARK 3 L13: -0.0359 L23: 0.0304 REMARK 3 S TENSOR REMARK 3 S11: -0.0483 S12: -0.0786 S13: 0.0382 REMARK 3 S21: 0.6061 S22: -0.0940 S23: -0.1373 REMARK 3 S31: -0.1394 S32: 0.1913 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN R AND RESID 100:118) REMARK 3 ORIGIN FOR THE GROUP (A): -19.1514 0.3045 18.7740 REMARK 3 T TENSOR REMARK 3 T11: 0.3366 T22: 0.2023 REMARK 3 T33: 0.1463 T12: -0.0318 REMARK 3 T13: -0.0122 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 0.0550 L22: 0.0372 REMARK 3 L33: 0.0904 L12: -0.0648 REMARK 3 L13: 0.0313 L23: -0.0292 REMARK 3 S TENSOR REMARK 3 S11: 0.0692 S12: 0.0760 S13: -0.1029 REMARK 3 S21: 0.5489 S22: 0.0050 S23: -0.0218 REMARK 3 S31: -0.0387 S32: 0.2769 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN R AND RESID 119:138) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3337 5.1951 12.2012 REMARK 3 T TENSOR REMARK 3 T11: 0.1898 T22: 0.2095 REMARK 3 T33: 0.1879 T12: -0.0037 REMARK 3 T13: -0.0297 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.1398 L22: 0.1173 REMARK 3 L33: 0.0562 L12: -0.1606 REMARK 3 L13: -0.0509 L23: 0.0593 REMARK 3 S TENSOR REMARK 3 S11: 0.1294 S12: 0.0488 S13: 0.0273 REMARK 3 S21: 0.0479 S22: -0.2043 S23: -0.0765 REMARK 3 S31: 0.0704 S32: 0.1145 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN R AND RESID 139:155) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8358 6.4235 15.8554 REMARK 3 T TENSOR REMARK 3 T11: 0.2899 T22: 0.3495 REMARK 3 T33: 0.3486 T12: -0.1264 REMARK 3 T13: -0.1319 T23: 0.0399 REMARK 3 L TENSOR REMARK 3 L11: 0.1172 L22: 0.0159 REMARK 3 L33: 0.0225 L12: 0.0005 REMARK 3 L13: -0.0576 L23: -0.0200 REMARK 3 S TENSOR REMARK 3 S11: 0.4673 S12: 0.3710 S13: -0.2146 REMARK 3 S21: 0.4062 S22: -0.3588 S23: -0.3448 REMARK 3 S31: 0.3068 S32: -0.1490 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KHD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222212. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17238 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 27.977 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POTASSIUM/SODIUM PHOSPHATE, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.79000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.79000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 18.08000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.79000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 18.08000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.79000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.79000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 18.08000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.79000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.79000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 18.08000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.79000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: R, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH R 355 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY R 76 REMARK 465 SER R 77 REMARK 465 HIS R 78 REMARK 465 MET R 79 REMARK 465 GLU R 80 REMARK 465 PRO R 81 REMARK 465 PRO R 82 REMARK 465 ASP R 156 REMARK 465 ALA R 157 REMARK 465 ARG R 158 REMARK 465 ARG R 159 REMARK 465 ALA R 160 REMARK 465 VAL R 161 REMARK 465 ALA R 162 REMARK 465 HIS R 163 REMARK 465 GLU R 164 REMARK 465 GLU R 165 REMARK 465 ASN R 166 REMARK 465 GLY A 76 REMARK 465 SER A 77 REMARK 465 HIS A 78 REMARK 465 MET A 79 REMARK 465 GLU A 80 REMARK 465 PRO A 81 REMARK 465 PRO A 82 REMARK 465 PRO A 83 REMARK 465 ASP A 156 REMARK 465 ALA A 157 REMARK 465 ARG A 158 REMARK 465 ARG A 159 REMARK 465 ALA A 160 REMARK 465 VAL A 161 REMARK 465 ALA A 162 REMARK 465 HIS A 163 REMARK 465 GLU A 164 REMARK 465 GLU A 165 REMARK 465 ASN A 166 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG R 130 NH1 NH2 REMARK 470 GLN A 97 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA R 93 O HOH R 301 1.96 REMARK 500 OE1 GLN R 97 O HOH R 302 2.08 REMARK 500 O HOH A 351 O HOH A 355 2.08 REMARK 500 OD2 ASP R 127 O HOH R 303 2.09 REMARK 500 OD1 ASN R 118 O HOH R 304 2.12 REMARK 500 O HOH R 339 O HOH R 342 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN R 118 56.24 -143.94 REMARK 500 TRP R 150 1.36 -67.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C2E R 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C2E R 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C2E A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C2E A 202 DBREF 5KHD R 80 166 UNP F2RCL8 F2RCL8_STRVP 80 166 DBREF 5KHD A 80 166 UNP F2RCL8 F2RCL8_STRVP 80 166 SEQADV 5KHD GLY R 76 UNP F2RCL8 EXPRESSION TAG SEQADV 5KHD SER R 77 UNP F2RCL8 EXPRESSION TAG SEQADV 5KHD HIS R 78 UNP F2RCL8 EXPRESSION TAG SEQADV 5KHD MET R 79 UNP F2RCL8 EXPRESSION TAG SEQADV 5KHD GLY A 76 UNP F2RCL8 EXPRESSION TAG SEQADV 5KHD SER A 77 UNP F2RCL8 EXPRESSION TAG SEQADV 5KHD HIS A 78 UNP F2RCL8 EXPRESSION TAG SEQADV 5KHD MET A 79 UNP F2RCL8 EXPRESSION TAG SEQRES 1 R 91 GLY SER HIS MET GLU PRO PRO PRO LYS LEU VAL LEU ASP SEQRES 2 R 91 LEU GLU ARG LEU ALA HIS VAL PRO GLN GLU LYS ALA GLY SEQRES 3 R 91 PRO LEU GLN ARG TYR ALA ALA THR ILE GLN SER GLN ARG SEQRES 4 R 91 GLY ASP TYR ASN GLY LYS VAL LEU SER ILE ARG GLN ASP SEQRES 5 R 91 ASP LEU ARG THR LEU ALA VAL ILE TYR ASP GLN SER PRO SEQRES 6 R 91 SER VAL LEU THR GLU GLN LEU ILE SER TRP GLY VAL LEU SEQRES 7 R 91 ASP ALA ASP ALA ARG ARG ALA VAL ALA HIS GLU GLU ASN SEQRES 1 A 91 GLY SER HIS MET GLU PRO PRO PRO LYS LEU VAL LEU ASP SEQRES 2 A 91 LEU GLU ARG LEU ALA HIS VAL PRO GLN GLU LYS ALA GLY SEQRES 3 A 91 PRO LEU GLN ARG TYR ALA ALA THR ILE GLN SER GLN ARG SEQRES 4 A 91 GLY ASP TYR ASN GLY LYS VAL LEU SER ILE ARG GLN ASP SEQRES 5 A 91 ASP LEU ARG THR LEU ALA VAL ILE TYR ASP GLN SER PRO SEQRES 6 A 91 SER VAL LEU THR GLU GLN LEU ILE SER TRP GLY VAL LEU SEQRES 7 A 91 ASP ALA ASP ALA ARG ARG ALA VAL ALA HIS GLU GLU ASN HET C2E R 201 69 HET C2E R 202 46 HET C2E A 201 46 HET C2E A 202 46 HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETSYN C2E C-DI-GMP; CYCLIC DIGUANOSINE MONOPHOSPHATE FORMUL 3 C2E 4(C20 H24 N10 O14 P2) FORMUL 7 HOH *127(H2 O) HELIX 1 AA1 LEU R 89 HIS R 94 1 6 HELIX 2 AA2 PRO R 96 GLY R 115 1 20 HELIX 3 AA3 ASP R 127 ASP R 137 1 11 HELIX 4 AA4 SER R 139 TRP R 150 1 12 HELIX 5 AA5 LEU A 89 HIS A 94 1 6 HELIX 6 AA6 PRO A 96 GLY A 115 1 20 HELIX 7 AA7 ARG A 125 ASP A 137 1 13 HELIX 8 AA8 SER A 139 TRP A 150 1 12 SHEET 1 AA1 2 LEU R 85 ASP R 88 0 SHEET 2 AA1 2 VAL R 121 ILE R 124 -1 O LEU R 122 N LEU R 87 SHEET 1 AA2 2 LEU A 85 ASP A 88 0 SHEET 2 AA2 2 VAL A 121 ILE A 124 -1 O LEU A 122 N LEU A 87 SITE 1 AC1 18 GLN A 113 ARG A 114 ARG A 125 ASP A 128 SITE 2 AC1 18 C2E A 201 C2E A 202 HOH A 301 HOH A 343 SITE 3 AC1 18 LYS R 84 ARG R 114 SER R 123 ILE R 124 SITE 4 AC1 18 ARG R 125 GLN R 126 C2E R 202 HOH R 312 SITE 5 AC1 18 HOH R 313 HOH R 332 SITE 1 AC2 20 ARG A 114 GLY A 115 ASP A 116 C2E A 201 SITE 2 AC2 20 C2E A 202 HOH A 301 HOH A 302 LYS R 84 SITE 3 AC2 20 ARG R 114 ASP R 116 ASN R 118 VAL R 121 SITE 4 AC2 20 LEU R 122 SER R 123 C2E R 201 HOH R 304 SITE 5 AC2 20 HOH R 307 HOH R 311 HOH R 336 HOH R 342 SITE 1 AC3 19 LYS A 84 ARG A 114 SER A 123 ILE A 124 SITE 2 AC3 19 ARG A 125 GLN A 126 C2E A 202 HOH A 306 SITE 3 AC3 19 HOH A 330 HOH A 334 GLN R 113 ARG R 114 SITE 4 AC3 19 ILE R 124 ARG R 125 ASP R 128 C2E R 201 SITE 5 AC3 19 C2E R 202 HOH R 316 HOH R 321 SITE 1 AC4 19 LYS A 84 ARG A 114 ASP A 116 ASN A 118 SITE 2 AC4 19 VAL A 121 LEU A 122 SER A 123 C2E A 201 SITE 3 AC4 19 HOH A 306 HOH A 308 HOH A 316 HOH A 340 SITE 4 AC4 19 ARG R 114 GLY R 115 ASP R 116 ASN R 118 SITE 5 AC4 19 C2E R 201 C2E R 202 HOH R 318 CRYST1 36.160 95.580 99.580 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027655 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010462 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010042 0.00000