data_5KIF # _entry.id 5KIF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5KIF pdb_00005kif 10.2210/pdb5kif/pdb WWPDB D_1000222288 ? ? BMRB 30116 ? 10.13018/BMR30116 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-08-24 2 'Structure model' 1 1 2016-09-21 3 'Structure model' 1 2 2016-11-02 4 'Structure model' 1 3 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' entity 5 4 'Structure model' pdbx_nmr_software 6 4 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_entity.pdbx_number_of_molecules' 4 4 'Structure model' '_pdbx_nmr_software.name' 5 4 'Structure model' '_pdbx_nmr_spectrometer.model' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5KIF _pdbx_database_status.recvd_initial_deposition_date 2016-06-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type BMRB . 30116 unspecified PDB . 5KGV unspecified PDB . 5KI7 unspecified PDB . 5KIB unspecified PDB . 5KIE unspecified PDB . 5KIH unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Evich, M.' 1 'Spring-Connell, A.M.' 2 'Storici, F.' 3 'Germann, M.W.' 4 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Chembiochem _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1439-7633 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 17 _citation.language ? _citation.page_first 1968 _citation.page_last 1977 _citation.title 'Structural Impact of Single Ribonucleotide Residues in DNA.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/cbic.201600385 _citation.pdbx_database_id_PubMed 27504600 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Evich, M.' 1 ? primary 'Spring-Connell, A.M.' 2 ? primary 'Storici, F.' 3 ? primary 'Germann, M.W.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA/RNA (5'-D(*AP*TP*CP*C)-R(P*G)-D(P*GP*TP*AP*G)-3') ; 2771.823 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*CP*TP*AP*CP*CP*GP*GP*AP*T)-3') ; 2715.799 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polydeoxyribonucleotide/polyribonucleotide hybrid' no no '(DA)(DT)(DC)(DC)G(DG)(DT)(DA)(DG)' ATCCGGTAG A ? 2 polydeoxyribonucleotide no no '(DC)(DT)(DA)(DC)(DC)(DG)(DG)(DA)(DT)' CTACCGGAT B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DT n 1 3 DC n 1 4 DC n 1 5 G n 1 6 DG n 1 7 DT n 1 8 DA n 1 9 DG n 2 1 DC n 2 2 DT n 2 3 DA n 2 4 DC n 2 5 DC n 2 6 DG n 2 7 DG n 2 8 DA n 2 9 DT n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 9 'synthetic construct' ? 32630 ? 2 1 sample 1 9 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 G 5 5 5 G G A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DA 8 8 8 DA DA A . n A 1 9 DG 9 9 9 DG DG A . n B 2 1 DC 1 10 10 DC DC B . n B 2 2 DT 2 11 11 DT DT B . n B 2 3 DA 3 12 12 DA DA B . n B 2 4 DC 4 13 13 DC DC B . n B 2 5 DC 5 14 14 DC DC B . n B 2 6 DG 6 15 15 DG DG B . n B 2 7 DG 7 16 16 DG DG B . n B 2 8 DA 8 17 17 DA DA B . n B 2 9 DT 9 18 18 DT DT B . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5KIF _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5KIF _struct.title 'Structural impact of single ribonucleotides in DNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5KIF _struct_keywords.text 'DNA, RNA, Ribonucleotides' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 5KIF 5KIF ? 1 ? 1 2 PDB 5KIF 5KIF ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5KIF A 1 ? 9 ? 5KIF 1 ? 9 ? 1 9 2 2 5KIF B 1 ? 9 ? 5KIF 10 ? 18 ? 10 18 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 840 ? 1 MORE -5 ? 1 'SSA (A^2)' 3560 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B DT 9 N3 ? ? A DA 1 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DT 9 O4 ? ? A DA 1 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 2 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 2 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 3 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 3 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 3 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 4 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 4 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 4 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 5 N1 ? ? ? 1_555 B DC 5 N3 ? ? A G 5 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N2 ? ? ? 1_555 B DC 5 O2 ? ? A G 5 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 O6 ? ? ? 1_555 B DC 5 N4 ? ? A G 5 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 6 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 6 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 6 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 7 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 7 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 8 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 8 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 9 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 9 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 9 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C3'" A DT 7 ? ? "C2'" A DT 7 ? ? 1.450 1.516 -0.066 0.008 N 2 1 "O3'" A DT 7 ? ? "C3'" A DT 7 ? ? 1.374 1.419 -0.045 0.006 N 3 1 "O3'" B DC 10 ? ? "C3'" B DC 10 ? ? 1.373 1.419 -0.046 0.006 N 4 1 "O3'" B DA 12 ? ? "C3'" B DA 12 ? ? 1.361 1.419 -0.058 0.006 N 5 1 "C3'" B DC 13 ? ? "C2'" B DC 13 ? ? 1.462 1.516 -0.054 0.008 N 6 1 N3 B DC 13 ? ? C4 B DC 13 ? ? 1.289 1.335 -0.046 0.007 N 7 1 C2 B DG 15 ? ? N2 B DG 15 ? ? 1.265 1.341 -0.076 0.010 N 8 1 "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? 1.380 1.446 -0.066 0.010 N 9 2 C6 A DA 1 ? ? N1 A DA 1 ? ? 1.303 1.351 -0.048 0.007 N 10 2 N3 A DC 4 ? ? C4 A DC 4 ? ? 1.279 1.335 -0.056 0.007 N 11 2 C8 A G 5 ? ? N9 A G 5 ? ? 1.318 1.374 -0.056 0.007 N 12 2 N1 A DG 6 ? ? C2 A DG 6 ? ? 1.320 1.373 -0.053 0.008 N 13 2 N7 A DG 6 ? ? C8 A DG 6 ? ? 1.265 1.305 -0.040 0.006 N 14 2 "O3'" A DG 9 ? ? "C3'" A DG 9 ? ? 1.376 1.419 -0.043 0.006 N 15 2 C4 A DG 9 ? ? C5 A DG 9 ? ? 1.329 1.379 -0.050 0.007 N 16 2 "C3'" B DT 11 ? ? "C2'" B DT 11 ? ? 1.359 1.516 -0.157 0.008 N 17 2 "C2'" B DT 11 ? ? "C1'" B DT 11 ? ? 1.412 1.518 -0.106 0.010 N 18 2 "O3'" B DT 11 ? ? "C3'" B DT 11 ? ? 1.346 1.419 -0.073 0.006 N 19 2 C6 B DA 12 ? ? N1 B DA 12 ? ? 1.309 1.351 -0.042 0.007 N 20 2 C4 B DC 13 ? ? N4 B DC 13 ? ? 1.274 1.335 -0.061 0.009 N 21 2 "O4'" B DG 15 ? ? "C4'" B DG 15 ? ? 1.385 1.446 -0.061 0.010 N 22 2 C2 B DG 15 ? ? N2 B DG 15 ? ? 1.227 1.341 -0.114 0.010 N 23 2 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 1.464 1.516 -0.052 0.008 N 24 2 C6 B DA 17 ? ? N6 B DA 17 ? ? 1.284 1.335 -0.051 0.008 N 25 2 "O3'" B DT 18 ? ? "C3'" B DT 18 ? ? 1.374 1.419 -0.045 0.006 N 26 3 "O4'" A DA 1 ? ? "C4'" A DA 1 ? ? 1.384 1.446 -0.062 0.010 N 27 3 "O3'" A DA 1 ? ? "C3'" A DA 1 ? ? 1.356 1.419 -0.063 0.006 N 28 3 "O4'" A DC 3 ? ? "C4'" A DC 3 ? ? 1.382 1.446 -0.064 0.010 N 29 3 C4 A DC 3 ? ? N4 A DC 3 ? ? 1.273 1.335 -0.062 0.009 N 30 3 "C3'" A DC 4 ? ? "C2'" A DC 4 ? ? 1.399 1.516 -0.117 0.008 N 31 3 "O3'" A DC 4 ? ? "C3'" A DC 4 ? ? 1.363 1.419 -0.056 0.006 N 32 3 N3 A DC 4 ? ? C4 A DC 4 ? ? 1.286 1.335 -0.049 0.007 N 33 3 C8 A G 5 ? ? N9 A G 5 ? ? 1.325 1.374 -0.049 0.007 N 34 3 C2 A G 5 ? ? N2 A G 5 ? ? 1.278 1.341 -0.063 0.010 N 35 3 "O3'" A DT 7 ? ? "C3'" A DT 7 ? ? 1.370 1.419 -0.049 0.006 N 36 3 N3 A DA 8 ? ? C4 A DA 8 ? ? 1.386 1.344 0.042 0.006 N 37 3 "C5'" A DG 9 ? ? "C4'" A DG 9 ? ? 1.555 1.512 0.043 0.007 N 38 3 "C4'" B DC 10 ? ? "C3'" B DC 10 ? ? 1.456 1.521 -0.065 0.010 N 39 3 "C3'" B DC 10 ? ? "C2'" B DC 10 ? ? 1.430 1.516 -0.086 0.008 N 40 3 "C2'" B DC 10 ? ? "C1'" B DC 10 ? ? 1.387 1.518 -0.131 0.010 N 41 3 "O4'" B DC 10 ? ? "C1'" B DC 10 ? ? 1.297 1.418 -0.121 0.012 N 42 3 "O3'" B DT 18 ? ? "C3'" B DT 18 ? ? 1.369 1.419 -0.050 0.006 N 43 3 C5 B DT 18 ? ? C6 B DT 18 ? ? 1.391 1.339 0.052 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 112.21 108.30 3.91 0.30 N 2 1 C4 A DA 1 ? ? C5 A DA 1 ? ? C6 A DA 1 ? ? 113.67 117.00 -3.33 0.50 N 3 1 C5 A DA 1 ? ? C6 A DA 1 ? ? N1 A DA 1 ? ? 122.57 117.70 4.87 0.50 N 4 1 N1 A DA 1 ? ? C6 A DA 1 ? ? N6 A DA 1 ? ? 111.49 118.60 -7.11 0.60 N 5 1 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.41 108.30 2.11 0.30 N 6 1 C5 A DT 2 ? ? C6 A DT 2 ? ? N1 A DT 2 ? ? 120.08 123.70 -3.62 0.60 N 7 1 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 118.76 122.90 -4.14 0.60 N 8 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.93 108.30 2.63 0.30 N 9 1 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 123.28 118.90 4.38 0.60 N 10 1 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 117.21 121.90 -4.69 0.70 N 11 1 C2 A DC 4 ? ? N3 A DC 4 ? ? C4 A DC 4 ? ? 116.82 119.90 -3.08 0.50 N 12 1 N3 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 117.11 121.90 -4.79 0.70 N 13 1 "O4'" A G 5 ? ? "C1'" A G 5 ? ? "C2'" A G 5 ? ? 99.41 105.80 -6.39 1.00 N 14 1 "O4'" A G 5 ? ? "C1'" A G 5 ? ? N9 A G 5 ? ? 115.70 108.50 7.20 0.70 N 15 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.35 108.30 3.05 0.30 N 16 1 N3 A DG 6 ? ? C4 A DG 6 ? ? C5 A DG 6 ? ? 125.52 128.60 -3.08 0.50 N 17 1 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 115.18 111.50 3.68 0.50 N 18 1 "C4'" A DT 7 ? ? "C3'" A DT 7 ? ? "C2'" A DT 7 ? ? 97.41 102.20 -4.79 0.70 N 19 1 "C3'" A DT 7 ? ? "C2'" A DT 7 ? ? "C1'" A DT 7 ? ? 111.32 102.50 8.82 1.20 N 20 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.60 108.30 4.30 0.30 N 21 1 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 117.78 122.30 -4.52 0.60 N 22 1 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.10 122.90 -4.80 0.60 N 23 1 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 113.02 118.60 -5.58 0.60 N 24 1 "C1'" A DG 9 ? ? "O4'" A DG 9 ? ? "C4'" A DG 9 ? ? 103.94 110.10 -6.16 1.00 N 25 1 "O4'" B DC 10 ? ? "C1'" B DC 10 ? ? N1 B DC 10 ? ? 111.22 108.30 2.92 0.30 N 26 1 "O4'" B DT 11 ? ? "C1'" B DT 11 ? ? N1 B DT 11 ? ? 112.93 108.30 4.63 0.30 N 27 1 C5 B DT 11 ? ? C6 B DT 11 ? ? N1 B DT 11 ? ? 120.07 123.70 -3.63 0.60 N 28 1 N3 B DT 11 ? ? C2 B DT 11 ? ? O2 B DT 11 ? ? 117.69 122.30 -4.61 0.60 N 29 1 C6 B DT 11 ? ? C5 B DT 11 ? ? C7 B DT 11 ? ? 118.32 122.90 -4.58 0.60 N 30 1 "O4'" B DA 12 ? ? "C1'" B DA 12 ? ? N9 B DA 12 ? ? 112.80 108.30 4.50 0.30 N 31 1 C4 B DA 12 ? ? C5 B DA 12 ? ? C6 B DA 12 ? ? 112.71 117.00 -4.29 0.50 N 32 1 C5 B DA 12 ? ? C6 B DA 12 ? ? N1 B DA 12 ? ? 121.73 117.70 4.03 0.50 N 33 1 N1 B DA 12 ? ? C6 B DA 12 ? ? N6 B DA 12 ? ? 114.47 118.60 -4.13 0.60 N 34 1 N1 B DC 13 ? ? C2 B DC 13 ? ? O2 B DC 13 ? ? 124.01 118.90 5.11 0.60 N 35 1 N3 B DC 13 ? ? C2 B DC 13 ? ? O2 B DC 13 ? ? 113.90 121.90 -8.00 0.70 N 36 1 "C3'" B DC 14 ? ? "C2'" B DC 14 ? ? "C1'" B DC 14 ? ? 97.60 102.40 -4.80 0.80 N 37 1 N3 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 117.11 121.90 -4.79 0.70 N 38 1 "O4'" B DG 15 ? ? "C1'" B DG 15 ? ? N9 B DG 15 ? ? 110.78 108.30 2.48 0.30 N 39 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 115.29 108.30 6.99 0.30 N 40 1 C5 B DG 16 ? ? C6 B DG 16 ? ? N1 B DG 16 ? ? 115.58 111.50 4.08 0.50 N 41 1 N1 B DG 16 ? ? C6 B DG 16 ? ? O6 B DG 16 ? ? 115.37 119.90 -4.53 0.60 N 42 1 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 113.24 118.60 -5.36 0.60 N 43 1 "O4'" B DT 18 ? ? "C4'" B DT 18 ? ? "C3'" B DT 18 ? ? 110.48 106.00 4.48 0.60 N 44 1 "O4'" B DT 18 ? ? "C1'" B DT 18 ? ? N1 B DT 18 ? ? 111.87 108.30 3.57 0.30 N 45 1 C6 B DT 18 ? ? N1 B DT 18 ? ? C2 B DT 18 ? ? 124.92 121.30 3.62 0.50 N 46 1 C5 B DT 18 ? ? C6 B DT 18 ? ? N1 B DT 18 ? ? 118.07 123.70 -5.63 0.60 N 47 2 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 110.86 108.30 2.56 0.30 N 48 2 C4 A DA 1 ? ? C5 A DA 1 ? ? C6 A DA 1 ? ? 113.96 117.00 -3.04 0.50 N 49 2 C5 A DA 1 ? ? C6 A DA 1 ? ? N1 A DA 1 ? ? 123.11 117.70 5.41 0.50 N 50 2 N1 A DA 1 ? ? C6 A DA 1 ? ? N6 A DA 1 ? ? 111.42 118.60 -7.18 0.60 N 51 2 "O4'" A DT 2 ? ? "C4'" A DT 2 ? ? "C3'" A DT 2 ? ? 109.66 106.00 3.66 0.60 N 52 2 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.61 108.30 3.31 0.30 N 53 2 N3 A DT 2 ? ? C2 A DT 2 ? ? O2 A DT 2 ? ? 118.49 122.30 -3.81 0.60 N 54 2 N3 A DT 2 ? ? C4 A DT 2 ? ? O4 A DT 2 ? ? 115.73 119.90 -4.17 0.60 N 55 2 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.42 108.30 2.12 0.30 N 56 2 C2 A DC 3 ? ? N3 A DC 3 ? ? C4 A DC 3 ? ? 115.95 119.90 -3.95 0.50 N 57 2 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 115.93 121.90 -5.97 0.70 N 58 2 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 112.06 108.30 3.76 0.30 N 59 2 C6 A DC 4 ? ? N1 A DC 4 ? ? C2 A DC 4 ? ? 117.42 120.30 -2.88 0.40 N 60 2 N3 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 116.88 121.90 -5.02 0.70 N 61 2 "O4'" A G 5 ? ? "C1'" A G 5 ? ? "C2'" A G 5 ? ? 99.54 105.80 -6.26 1.00 N 62 2 C5 A G 5 ? ? N7 A G 5 ? ? C8 A G 5 ? ? 101.29 104.30 -3.01 0.50 N 63 2 N7 A G 5 ? ? C8 A G 5 ? ? N9 A G 5 ? ? 116.48 113.10 3.38 0.50 N 64 2 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.25 108.30 2.95 0.30 N 65 2 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.59 108.30 2.29 0.30 N 66 2 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 111.01 108.30 2.71 0.30 N 67 2 C5 A DA 8 ? ? C6 A DA 8 ? ? N1 A DA 8 ? ? 121.90 117.70 4.20 0.50 N 68 2 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 114.17 118.60 -4.43 0.60 N 69 2 "O4'" B DC 10 ? ? "C1'" B DC 10 ? ? N1 B DC 10 ? ? 111.58 108.30 3.28 0.30 N 70 2 "C3'" B DT 11 ? ? "C2'" B DT 11 ? ? "C1'" B DT 11 ? ? 116.86 102.50 14.36 1.20 N 71 2 "O4'" B DT 11 ? ? "C1'" B DT 11 ? ? N1 B DT 11 ? ? 115.04 108.30 6.74 0.30 N 72 2 C5 B DT 11 ? ? C6 B DT 11 ? ? N1 B DT 11 ? ? 119.95 123.70 -3.75 0.60 N 73 2 C6 B DT 11 ? ? C5 B DT 11 ? ? C7 B DT 11 ? ? 117.15 122.90 -5.75 0.60 N 74 2 "O4'" B DA 12 ? ? "C1'" B DA 12 ? ? N9 B DA 12 ? ? 110.30 108.30 2.00 0.30 N 75 2 C5 B DA 12 ? ? C6 B DA 12 ? ? N1 B DA 12 ? ? 121.39 117.70 3.69 0.50 N 76 2 N1 B DA 12 ? ? C6 B DA 12 ? ? N6 B DA 12 ? ? 112.01 118.60 -6.59 0.60 N 77 2 N1 B DC 13 ? ? C2 B DC 13 ? ? O2 B DC 13 ? ? 122.68 118.90 3.78 0.60 N 78 2 N3 B DC 13 ? ? C2 B DC 13 ? ? O2 B DC 13 ? ? 116.01 121.90 -5.89 0.70 N 79 2 "O4'" B DG 15 ? ? "C1'" B DG 15 ? ? N9 B DG 15 ? ? 115.81 108.30 7.51 0.30 N 80 2 N3 B DG 15 ? ? C4 B DG 15 ? ? C5 B DG 15 ? ? 125.49 128.60 -3.11 0.50 N 81 2 C4 B DG 15 ? ? C5 B DG 15 ? ? N7 B DG 15 ? ? 108.28 110.80 -2.52 0.40 N 82 2 C8 B DG 15 ? ? N9 B DG 15 ? ? C4 B DG 15 ? ? 103.80 106.40 -2.60 0.40 N 83 2 N9 B DG 15 ? ? C4 B DG 15 ? ? C5 B DG 15 ? ? 108.30 105.40 2.90 0.40 N 84 2 N1 B DG 15 ? ? C6 B DG 15 ? ? O6 B DG 15 ? ? 116.25 119.90 -3.65 0.60 N 85 2 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 112.46 108.30 4.16 0.30 N 86 2 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 113.50 117.00 -3.50 0.50 N 87 2 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 121.54 117.70 3.84 0.50 N 88 2 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 113.77 118.60 -4.83 0.60 N 89 2 "O4'" B DT 18 ? ? "C1'" B DT 18 ? ? N1 B DT 18 ? ? 110.74 108.30 2.44 0.30 N 90 2 N1 B DT 18 ? ? C2 B DT 18 ? ? N3 B DT 18 ? ? 118.30 114.60 3.70 0.60 N 91 2 C5 B DT 18 ? ? C6 B DT 18 ? ? N1 B DT 18 ? ? 120.06 123.70 -3.64 0.60 N 92 3 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 113.64 108.30 5.34 0.30 N 93 3 C5 A DA 1 ? ? C6 A DA 1 ? ? N1 A DA 1 ? ? 120.88 117.70 3.18 0.50 N 94 3 N1 A DA 1 ? ? C6 A DA 1 ? ? N6 A DA 1 ? ? 113.54 118.60 -5.06 0.60 N 95 3 C5 A DT 2 ? ? C4 A DT 2 ? ? O4 A DT 2 ? ? 129.11 124.90 4.21 0.70 N 96 3 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 114.99 108.30 6.69 0.30 N 97 3 "C3'" A DC 4 ? ? "C2'" A DC 4 ? ? "C1'" A DC 4 ? ? 111.95 102.50 9.45 1.20 N 98 3 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? "C2'" A DC 4 ? ? 99.74 105.90 -6.16 0.80 N 99 3 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 112.38 108.30 4.08 0.30 N 100 3 N3 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 115.66 121.90 -6.24 0.70 N 101 3 "O4'" A G 5 ? ? "C1'" A G 5 ? ? N9 A G 5 ? ? 113.65 108.50 5.15 0.70 N 102 3 N1 A G 5 ? ? C6 A G 5 ? ? O6 A G 5 ? ? 114.76 119.90 -5.14 0.60 N 103 3 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.56 108.30 3.26 0.30 N 104 3 C2 A DG 6 ? ? N3 A DG 6 ? ? C4 A DG 6 ? ? 115.32 111.90 3.42 0.50 N 105 3 N3 A DG 6 ? ? C4 A DG 6 ? ? C5 A DG 6 ? ? 124.18 128.60 -4.42 0.50 N 106 3 C8 A DG 6 ? ? N9 A DG 6 ? ? C4 A DG 6 ? ? 103.88 106.40 -2.52 0.40 N 107 3 N9 A DG 6 ? ? C4 A DG 6 ? ? C5 A DG 6 ? ? 108.45 105.40 3.05 0.40 N 108 3 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 117.25 122.30 -5.05 0.60 N 109 3 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 111.55 108.30 3.25 0.30 N 110 3 C4 A DA 8 ? ? C5 A DA 8 ? ? C6 A DA 8 ? ? 112.93 117.00 -4.07 0.50 N 111 3 C5 A DA 8 ? ? C6 A DA 8 ? ? N1 A DA 8 ? ? 121.43 117.70 3.73 0.50 N 112 3 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 114.88 118.60 -3.72 0.60 N 113 3 N3 A DG 9 ? ? C4 A DG 9 ? ? C5 A DG 9 ? ? 125.34 128.60 -3.26 0.50 N 114 3 C5 A DG 9 ? ? C6 A DG 9 ? ? N1 A DG 9 ? ? 114.59 111.50 3.09 0.50 N 115 3 "C3'" B DC 10 ? ? "C2'" B DC 10 ? ? "C1'" B DC 10 ? ? 111.09 102.50 8.59 1.20 N 116 3 "O4'" B DC 10 ? ? "C1'" B DC 10 ? ? N1 B DC 10 ? ? 111.42 108.30 3.12 0.30 N 117 3 C2 B DC 10 ? ? N3 B DC 10 ? ? C4 B DC 10 ? ? 116.90 119.90 -3.00 0.50 N 118 3 N3 B DC 10 ? ? C2 B DC 10 ? ? O2 B DC 10 ? ? 115.73 121.90 -6.17 0.70 N 119 3 C4 B DT 11 ? ? C5 B DT 11 ? ? C6 B DT 11 ? ? 121.83 118.00 3.83 0.60 N 120 3 N3 B DT 11 ? ? C2 B DT 11 ? ? O2 B DT 11 ? ? 118.41 122.30 -3.89 0.60 N 121 3 "O4'" B DA 12 ? ? "C1'" B DA 12 ? ? "C2'" B DA 12 ? ? 110.28 106.80 3.48 0.50 N 122 3 C4 B DA 12 ? ? C5 B DA 12 ? ? C6 B DA 12 ? ? 113.77 117.00 -3.23 0.50 N 123 3 C5 B DA 12 ? ? C6 B DA 12 ? ? N1 B DA 12 ? ? 121.09 117.70 3.39 0.50 N 124 3 C6 B DA 12 ? ? C5 B DA 12 ? ? N7 B DA 12 ? ? 136.67 132.30 4.37 0.70 N 125 3 N1 B DA 12 ? ? C6 B DA 12 ? ? N6 B DA 12 ? ? 113.14 118.60 -5.46 0.60 N 126 3 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? "C2'" B DC 13 ? ? 100.48 105.90 -5.42 0.80 N 127 3 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 110.14 108.30 1.84 0.30 N 128 3 C2 B DC 13 ? ? N3 B DC 13 ? ? C4 B DC 13 ? ? 116.75 119.90 -3.15 0.50 N 129 3 N3 B DC 13 ? ? C2 B DC 13 ? ? O2 B DC 13 ? ? 117.45 121.90 -4.45 0.70 N 130 3 N3 B DC 13 ? ? C4 B DC 13 ? ? N4 B DC 13 ? ? 113.65 118.00 -4.35 0.70 N 131 3 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 111.51 108.30 3.21 0.30 N 132 3 C6 B DC 14 ? ? N1 B DC 14 ? ? C2 B DC 14 ? ? 117.50 120.30 -2.80 0.40 N 133 3 "O4'" B DG 15 ? ? "C1'" B DG 15 ? ? N9 B DG 15 ? ? 115.96 108.30 7.66 0.30 N 134 3 C5 B DG 15 ? ? C6 B DG 15 ? ? N1 B DG 15 ? ? 114.88 111.50 3.38 0.50 N 135 3 N3 B DG 16 ? ? C2 B DG 16 ? ? N2 B DG 16 ? ? 115.57 119.90 -4.33 0.70 N 136 3 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 113.87 117.00 -3.13 0.50 N 137 3 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 121.16 117.70 3.46 0.50 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DT A 2 ? ? 0.100 'SIDE CHAIN' 2 1 DC A 4 ? ? 0.070 'SIDE CHAIN' 3 1 DG A 6 ? ? 0.073 'SIDE CHAIN' 4 1 DT B 11 ? ? 0.089 'SIDE CHAIN' 5 1 DA B 12 ? ? 0.064 'SIDE CHAIN' 6 2 DC A 3 ? ? 0.084 'SIDE CHAIN' 7 2 DG A 6 ? ? 0.051 'SIDE CHAIN' 8 2 DC B 13 ? ? 0.067 'SIDE CHAIN' 9 3 DT A 7 ? ? 0.090 'SIDE CHAIN' 10 3 DT B 11 ? ? 0.087 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 5KIF _pdbx_nmr_ensemble.conformers_calculated_total_number 8 _pdbx_nmr_ensemble.conformers_submitted_total_number 3 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5KIF _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 ;1 mM DNA/RNA (5'-D(*AP*TP*CP*C)-R(P*G)-D(P*GP*TP*AP*G)-3'), 1 mM DNA (5'-D(*CP*TP*AP*CP*CP*GP*GP*AP*T)-3'), 100 % 100% deuterium D2O, 100 mM sodium chloride, 10 mM sodium phosphate, 100% D2O ; '100% D2O' D2O_sample solution '100% D2O, pH 6.6' 2 ;1 mM DNA/RNA (5'-D(*AP*TP*CP*C)-R(P*G)-D(P*GP*TP*AP*G)-3'), 1 mM DNA (5'-D(*CP*TP*AP*CP*CP*GP*GP*AP*T)-3'), 10 % 100% deuterium D2O, 100 mM sodium chloride, 10 mM sodium phosphate, 90% H2O/10% D2O ; '90% H2O/10% D2O' H2O_sample solution '90% H2O, 10% D2O, pH 7.0' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 ;DNA/RNA (5'-D(*AP*TP*CP*C)-R(P*G)-D(P*GP*TP*AP*G)-3') ; 1 ? mM 'natural abundance' 1 ;DNA (5'-D(*CP*TP*AP*CP*CP*GP*GP*AP*T)-3') ; 1 ? mM 'natural abundance' 1 D2O 100 ? % '100% deuterium' 1 'sodium chloride' 100 ? mM 'natural abundance' 1 'sodium phosphate' 10 ? mM 'natural abundance' 2 ;DNA/RNA (5'-D(*AP*TP*CP*C)-R(P*G)-D(P*GP*TP*AP*G)-3') ; 1 ? mM 'natural abundance' 2 ;DNA (5'-D(*CP*TP*AP*CP*CP*GP*GP*AP*T)-3') ; 1 ? mM 'natural abundance' 2 D2O 10 ? % '100% deuterium' 2 'sodium chloride' 100 ? mM 'natural abundance' 2 'sodium phosphate' 10 ? mM 'natural abundance' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 294 atm ambient 6.6 110 ? ? mM D2O_conditions ? pH ? ? K 2 294 atm ambient 7.0 110 ? ? mM H2O_conditions ? pH ? ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D NOESY 250 ms' 1 isotropic 2 2 2 '2D NOESY' 1 isotropic 3 1 1 '2D Low Flip COSY' 1 isotropic 4 1 1 '2D 1H-13C HSQC' 2 isotropic 5 1 1 '2D constant time NOESY' 1 isotropic 6 1 1 '2D 1H-31P CORR' 1 isotropic 7 1 1 '2D NOESY 150 ms' 1 isotropic 10 1 1 '1D 1H' 1 isotropic 9 1 1 '1D 31P' 1 isotropic 8 2 2 '1D 1H 1-1 jump and return' 1 isotropic # _pdbx_nmr_refine.entry_id 5KIF _pdbx_nmr_refine.method 'matrix relaxation, molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 5 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'structure calculation' Amber 9 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 2 'chemical shift assignment' Sparky 3.33 Goddard 3 collection TopSpin ? 'Bruker Biospin' 4 refinement CORMA ? 'Thomas James' 5 refinement MARDIGRAS ? 'Thomas James' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 G OP3 O N N 144 G P P N N 145 G OP1 O N N 146 G OP2 O N N 147 G "O5'" O N N 148 G "C5'" C N N 149 G "C4'" C N R 150 G "O4'" O N N 151 G "C3'" C N S 152 G "O3'" O N N 153 G "C2'" C N R 154 G "O2'" O N N 155 G "C1'" C N R 156 G N9 N Y N 157 G C8 C Y N 158 G N7 N Y N 159 G C5 C Y N 160 G C6 C N N 161 G O6 O N N 162 G N1 N N N 163 G C2 C N N 164 G N2 N N N 165 G N3 N N N 166 G C4 C Y N 167 G HOP3 H N N 168 G HOP2 H N N 169 G "H5'" H N N 170 G "H5''" H N N 171 G "H4'" H N N 172 G "H3'" H N N 173 G "HO3'" H N N 174 G "H2'" H N N 175 G "HO2'" H N N 176 G "H1'" H N N 177 G H8 H N N 178 G H1 H N N 179 G H21 H N N 180 G H22 H N N 181 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 G OP3 P sing N N 150 G OP3 HOP3 sing N N 151 G P OP1 doub N N 152 G P OP2 sing N N 153 G P "O5'" sing N N 154 G OP2 HOP2 sing N N 155 G "O5'" "C5'" sing N N 156 G "C5'" "C4'" sing N N 157 G "C5'" "H5'" sing N N 158 G "C5'" "H5''" sing N N 159 G "C4'" "O4'" sing N N 160 G "C4'" "C3'" sing N N 161 G "C4'" "H4'" sing N N 162 G "O4'" "C1'" sing N N 163 G "C3'" "O3'" sing N N 164 G "C3'" "C2'" sing N N 165 G "C3'" "H3'" sing N N 166 G "O3'" "HO3'" sing N N 167 G "C2'" "O2'" sing N N 168 G "C2'" "C1'" sing N N 169 G "C2'" "H2'" sing N N 170 G "O2'" "HO2'" sing N N 171 G "C1'" N9 sing N N 172 G "C1'" "H1'" sing N N 173 G N9 C8 sing Y N 174 G N9 C4 sing Y N 175 G C8 N7 doub Y N 176 G C8 H8 sing N N 177 G N7 C5 sing Y N 178 G C5 C6 sing N N 179 G C5 C4 doub Y N 180 G C6 O6 doub N N 181 G C6 N1 sing N N 182 G N1 C2 sing N N 183 G N1 H1 sing N N 184 G C2 N2 sing N N 185 G C2 N3 doub N N 186 G N2 H21 sing N N 187 G N2 H22 sing N N 188 G N3 C4 sing N N 189 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5KIF 'double helix' 5KIF 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B DT 9 1_555 -0.160 -0.020 0.162 14.223 -12.887 4.156 1 A_DA1:DT18_B A 1 ? B 18 ? 20 1 1 A DT 2 1_555 B DA 8 1_555 -0.332 -0.034 -0.209 15.261 -19.519 0.465 2 A_DT2:DA17_B A 2 ? B 17 ? 20 1 1 A DC 3 1_555 B DG 7 1_555 0.227 -0.123 0.003 5.613 -25.630 -0.877 3 A_DC3:DG16_B A 3 ? B 16 ? 19 1 1 A DC 4 1_555 B DG 6 1_555 0.214 -0.091 -0.070 -6.656 -0.669 -0.114 4 A_DC4:DG15_B A 4 ? B 15 ? 19 1 1 A G 5 1_555 B DC 5 1_555 -0.164 -0.125 0.216 1.479 -3.236 -1.411 5 A_G5:DC14_B A 5 ? B 14 ? 19 1 1 A DG 6 1_555 B DC 4 1_555 0.184 -0.047 0.077 -9.293 -27.346 -3.533 6 A_DG6:DC13_B A 6 ? B 13 ? 19 1 1 A DT 7 1_555 B DA 3 1_555 -0.098 -0.051 0.330 -11.617 -21.129 0.230 7 A_DT7:DA12_B A 7 ? B 12 ? 20 1 1 A DA 8 1_555 B DT 2 1_555 0.111 0.059 0.165 -3.250 -25.854 -0.722 8 A_DA8:DT11_B A 8 ? B 11 ? 20 1 1 A DG 9 1_555 B DC 1 1_555 -0.174 -0.168 -0.047 -9.036 -15.628 -3.752 9 A_DG9:DC10_B A 9 ? B 10 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 B DT 9 1_555 A DT 2 1_555 B DA 8 1_555 -0.034 -0.649 3.348 1.727 -5.071 32.230 -0.241 0.372 3.401 -9.056 -3.084 32.660 1 AA_DA1DT2:DA17DT18_BB A 1 ? B 18 ? A 2 ? B 17 ? 1 A DT 2 1_555 B DA 8 1_555 A DC 3 1_555 B DG 7 1_555 0.388 -0.512 3.480 -0.843 0.147 40.633 -0.755 -0.658 3.470 0.211 1.213 40.641 2 AA_DT2DC3:DG16DA17_BB A 2 ? B 17 ? A 3 ? B 16 ? 1 A DC 3 1_555 B DG 7 1_555 A DC 4 1_555 B DG 6 1_555 -0.786 -1.297 3.615 -3.815 6.590 31.365 -3.600 0.682 3.351 11.970 6.930 32.253 3 AA_DC3DC4:DG15DG16_BB A 3 ? B 16 ? A 4 ? B 15 ? 1 A DC 4 1_555 B DG 6 1_555 A G 5 1_555 B DC 5 1_555 1.041 -0.572 3.041 0.024 6.126 28.833 -2.317 -2.042 2.862 12.129 -0.047 29.463 4 AA_DC4G5:DC14DG15_BB A 4 ? B 15 ? A 5 ? B 14 ? 1 A G 5 1_555 B DC 5 1_555 A DG 6 1_555 B DC 4 1_555 -1.675 0.473 3.622 -3.752 4.037 39.166 0.160 1.975 3.789 5.985 5.563 39.537 5 AA_G5DG6:DC13DC14_BB A 5 ? B 14 ? A 6 ? B 13 ? 1 A DG 6 1_555 B DC 4 1_555 A DT 7 1_555 B DA 3 1_555 0.959 -0.742 3.274 5.499 4.338 34.864 -1.855 -0.759 3.270 7.151 -9.064 35.539 6 AA_DG6DT7:DA12DC13_BB A 6 ? B 13 ? A 7 ? B 12 ? 1 A DT 7 1_555 B DA 3 1_555 A DA 8 1_555 B DT 2 1_555 0.106 -0.415 3.201 5.691 7.999 29.759 -2.231 0.844 2.962 15.067 -10.720 31.301 7 AA_DT7DA8:DT11DA12_BB A 7 ? B 12 ? A 8 ? B 11 ? 1 A DA 8 1_555 B DT 2 1_555 A DG 9 1_555 B DC 1 1_555 0.704 -1.050 3.693 -0.193 6.180 33.270 -2.903 -1.244 3.444 10.679 0.334 33.824 8 AA_DA8DG9:DC10DT11_BB A 8 ? B 11 ? A 9 ? B 10 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AVANCE ? Bruker 600 ? 2 'AVANCE III' ? Bruker 850 ? # _atom_sites.entry_id 5KIF _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_