data_5KIZ # _entry.id 5KIZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5KIZ pdb_00005kiz 10.2210/pdb5kiz/pdb WWPDB D_1000222269 ? ? BMRB 30118 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details . _pdbx_database_related.db_id 30118 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5KIZ _pdbx_database_status.recvd_initial_deposition_date 2016-06-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category CASP _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Correa, F.' 1 ? 'Key, J.' 2 ? 'Kuhlman, B.' 3 ? 'Gardner, K.H.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Structure _citation.journal_id_ASTM STRUE6 _citation.journal_id_CSD 2005 _citation.journal_id_ISSN 0969-2126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 24 _citation.language ? _citation.page_first 1918 _citation.page_last 1927 _citation.title 'Computational Repacking of HIF-2 alpha Cavity Replaces Water-Based Stabilized Core.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.str.2016.08.014 _citation.pdbx_database_id_PubMed 27667693 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Correa, F.' 1 ? primary 'Key, J.' 2 ? primary 'Kuhlman, B.' 3 ? primary 'Gardner, K.H.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Endothelial PAS domain-containing protein 1' _entity.formula_weight 13264.091 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation 'H248F, Y278S, Y281W, G323M, C339A' _entity.pdbx_fragment 'residues 239-349' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;EPAS-1,Basic-helix-loop-helix-PAS protein MOP2,Class E basic helix-loop-helix protein 73,bHLHe73,HIF-1-alpha-like factor,HLF,Hypoxia-inducible factor 2-alpha,HIF2-alpha,Member of PAS protein 2,PAS domain-containing protein 2 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GEFLDSKTFLSRFSMDMKFTYCDDRITELIGYHPEELLGRSASEFWHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGG YVWLETQMTVIYNPRNLQPQCIMAVNYVLSEIEK ; _entity_poly.pdbx_seq_one_letter_code_can ;GEFLDSKTFLSRFSMDMKFTYCDDRITELIGYHPEELLGRSASEFWHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGG YVWLETQMTVIYNPRNLQPQCIMAVNYVLSEIEK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLU n 1 3 PHE n 1 4 LEU n 1 5 ASP n 1 6 SER n 1 7 LYS n 1 8 THR n 1 9 PHE n 1 10 LEU n 1 11 SER n 1 12 ARG n 1 13 PHE n 1 14 SER n 1 15 MET n 1 16 ASP n 1 17 MET n 1 18 LYS n 1 19 PHE n 1 20 THR n 1 21 TYR n 1 22 CYS n 1 23 ASP n 1 24 ASP n 1 25 ARG n 1 26 ILE n 1 27 THR n 1 28 GLU n 1 29 LEU n 1 30 ILE n 1 31 GLY n 1 32 TYR n 1 33 HIS n 1 34 PRO n 1 35 GLU n 1 36 GLU n 1 37 LEU n 1 38 LEU n 1 39 GLY n 1 40 ARG n 1 41 SER n 1 42 ALA n 1 43 SER n 1 44 GLU n 1 45 PHE n 1 46 TRP n 1 47 HIS n 1 48 ALA n 1 49 LEU n 1 50 ASP n 1 51 SER n 1 52 GLU n 1 53 ASN n 1 54 MET n 1 55 THR n 1 56 LYS n 1 57 SER n 1 58 HIS n 1 59 GLN n 1 60 ASN n 1 61 LEU n 1 62 CYS n 1 63 THR n 1 64 LYS n 1 65 GLY n 1 66 GLN n 1 67 VAL n 1 68 VAL n 1 69 SER n 1 70 GLY n 1 71 GLN n 1 72 TYR n 1 73 ARG n 1 74 MET n 1 75 LEU n 1 76 ALA n 1 77 LYS n 1 78 HIS n 1 79 GLY n 1 80 GLY n 1 81 TYR n 1 82 VAL n 1 83 TRP n 1 84 LEU n 1 85 GLU n 1 86 THR n 1 87 GLN n 1 88 MET n 1 89 THR n 1 90 VAL n 1 91 ILE n 1 92 TYR n 1 93 ASN n 1 94 PRO n 1 95 ARG n 1 96 ASN n 1 97 LEU n 1 98 GLN n 1 99 PRO n 1 100 GLN n 1 101 CYS n 1 102 ILE n 1 103 MET n 1 104 ALA n 1 105 VAL n 1 106 ASN n 1 107 TYR n 1 108 VAL n 1 109 LEU n 1 110 SER n 1 111 GLU n 1 112 ILE n 1 113 GLU n 1 114 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 114 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'EPAS1, BHLHE73, HIF2A, MOP2, PASD2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code EPAS1_HUMAN _struct_ref.pdbx_db_accession Q99814 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LDSKTFLSRHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVW LETQGTVIYNPRNLQPQCIMCVNYVLSEIEK ; _struct_ref.pdbx_align_begin 239 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5KIZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 114 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q99814 _struct_ref_seq.db_align_beg 239 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 349 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 239 _struct_ref_seq.pdbx_auth_seq_align_end 349 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5KIZ GLY A 1 ? UNP Q99814 ? ? 'expression tag' 236 1 1 5KIZ GLU A 2 ? UNP Q99814 ? ? 'expression tag' 237 2 1 5KIZ PHE A 3 ? UNP Q99814 ? ? 'expression tag' 238 3 1 5KIZ PHE A 13 ? UNP Q99814 HIS 248 'engineered mutation' 248 4 1 5KIZ SER A 43 ? UNP Q99814 TYR 278 'engineered mutation' 278 5 1 5KIZ TRP A 46 ? UNP Q99814 TYR 281 'engineered mutation' 281 6 1 5KIZ MET A 88 ? UNP Q99814 GLY 323 'engineered mutation' 323 7 1 5KIZ ALA A 104 ? UNP Q99814 CYS 339 'engineered mutation' 339 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '3D CBCA(CO)NH' 1 isotropic 2 1 1 '3D HNCACB' 1 isotropic 3 1 1 '3D HNCO' 1 isotropic 4 1 1 '3D HCCH-TOCSY' 2 isotropic 5 1 1 '3D C(CO)NH' 1 isotropic 6 1 1 '3D H(CCO)NH' 1 isotropic 7 1 1 '2D 1H-15N HSQC' 1 isotropic 8 1 1 '3D 1H-15N NOESY' 2 isotropic 9 1 1 '3D 1H-13C NOESY' 2 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 20 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.5 mM [U-99% 13C; U-99% 15N] HIF-2 alpha D1, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label 15N13C_sample _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 INOVA ? Varian 600 ? 2 INOVA ? Varian 800 ? # _pdbx_nmr_refine.entry_id 5KIZ _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 5 # _pdbx_nmr_ensemble.entry_id 5KIZ _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5KIZ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection VNMR ? Varian 2 'data analysis' NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 3 'chemical shift assignment' NMRView ? 'Johnson, One Moon Scientific' 4 'peak picking' NMRView ? 'Johnson, One Moon Scientific' 5 'structure calculation' ARIA 2.3 ;Linge, O'Donoghue and Nilges ; 6 refinement ARIA 2.3 ;Linge, O'Donoghue and Nilges ; # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5KIZ _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5KIZ _struct.title 'Solution Structure of a repacked version of HIF-2 alpha PAS-B' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag Y # _struct_keywords.entry_id 5KIZ _struct_keywords.text 'Cavity, Repacking, Rosetta, TRANSCRIPTION' _struct_keywords.pdbx_keywords TRANSCRIPTION # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 24 ? ILE A 30 ? ASP A 259 ILE A 265 1 ? 7 HELX_P HELX_P2 AA2 HIS A 33 ? LEU A 38 ? HIS A 268 LEU A 273 1 ? 6 HELX_P HELX_P3 AA3 SER A 41 ? PHE A 45 ? SER A 276 PHE A 280 5 ? 5 HELX_P HELX_P4 AA4 HIS A 47 ? LEU A 61 ? HIS A 282 LEU A 296 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PHE A 19 ? CYS A 22 ? PHE A 254 CYS A 257 AA1 2 THR A 8 ? PHE A 13 ? THR A 243 PHE A 248 AA1 3 PRO A 99 ? SER A 110 ? PRO A 334 SER A 345 AA1 4 TYR A 81 ? TYR A 92 ? TYR A 316 TYR A 327 AA1 5 GLN A 66 ? VAL A 68 ? GLN A 301 VAL A 303 AA2 1 PHE A 19 ? CYS A 22 ? PHE A 254 CYS A 257 AA2 2 THR A 8 ? PHE A 13 ? THR A 243 PHE A 248 AA2 3 PRO A 99 ? SER A 110 ? PRO A 334 SER A 345 AA2 4 TYR A 81 ? TYR A 92 ? TYR A 316 TYR A 327 AA2 5 TYR A 72 ? LEU A 75 ? TYR A 307 LEU A 310 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O THR A 20 ? O THR A 255 N ARG A 12 ? N ARG A 247 AA1 2 3 N PHE A 9 ? N PHE A 244 O ASN A 106 ? O ASN A 341 AA1 3 4 O MET A 103 ? O MET A 338 N THR A 89 ? N THR A 324 AA1 4 5 O MET A 88 ? O MET A 323 N VAL A 67 ? N VAL A 302 AA2 1 2 O THR A 20 ? O THR A 255 N ARG A 12 ? N ARG A 247 AA2 2 3 N PHE A 9 ? N PHE A 244 O ASN A 106 ? O ASN A 341 AA2 3 4 O MET A 103 ? O MET A 338 N THR A 89 ? N THR A 324 AA2 4 5 O VAL A 82 ? O VAL A 317 N MET A 74 ? N MET A 309 # _atom_sites.entry_id 5KIZ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 236 236 GLY GLY A . n A 1 2 GLU 2 237 237 GLU GLU A . n A 1 3 PHE 3 238 238 PHE PHE A . n A 1 4 LEU 4 239 239 LEU LEU A . n A 1 5 ASP 5 240 240 ASP ASP A . n A 1 6 SER 6 241 241 SER SER A . n A 1 7 LYS 7 242 242 LYS LYS A . n A 1 8 THR 8 243 243 THR THR A . n A 1 9 PHE 9 244 244 PHE PHE A . n A 1 10 LEU 10 245 245 LEU LEU A . n A 1 11 SER 11 246 246 SER SER A . n A 1 12 ARG 12 247 247 ARG ARG A . n A 1 13 PHE 13 248 248 PHE PHE A . n A 1 14 SER 14 249 249 SER SER A . n A 1 15 MET 15 250 250 MET MET A . n A 1 16 ASP 16 251 251 ASP ASP A . n A 1 17 MET 17 252 252 MET MET A . n A 1 18 LYS 18 253 253 LYS LYS A . n A 1 19 PHE 19 254 254 PHE PHE A . n A 1 20 THR 20 255 255 THR THR A . n A 1 21 TYR 21 256 256 TYR TYR A . n A 1 22 CYS 22 257 257 CYS CYS A . n A 1 23 ASP 23 258 258 ASP ASP A . n A 1 24 ASP 24 259 259 ASP ASP A . n A 1 25 ARG 25 260 260 ARG ARG A . n A 1 26 ILE 26 261 261 ILE ILE A . n A 1 27 THR 27 262 262 THR THR A . n A 1 28 GLU 28 263 263 GLU GLU A . n A 1 29 LEU 29 264 264 LEU LEU A . n A 1 30 ILE 30 265 265 ILE ILE A . n A 1 31 GLY 31 266 266 GLY GLY A . n A 1 32 TYR 32 267 267 TYR TYR A . n A 1 33 HIS 33 268 268 HIS HIS A . n A 1 34 PRO 34 269 269 PRO PRO A . n A 1 35 GLU 35 270 270 GLU GLU A . n A 1 36 GLU 36 271 271 GLU GLU A . n A 1 37 LEU 37 272 272 LEU LEU A . n A 1 38 LEU 38 273 273 LEU LEU A . n A 1 39 GLY 39 274 274 GLY GLY A . n A 1 40 ARG 40 275 275 ARG ARG A . n A 1 41 SER 41 276 276 SER SER A . n A 1 42 ALA 42 277 277 ALA ALA A . n A 1 43 SER 43 278 278 SER SER A . n A 1 44 GLU 44 279 279 GLU GLU A . n A 1 45 PHE 45 280 280 PHE PHE A . n A 1 46 TRP 46 281 281 TRP TRP A . n A 1 47 HIS 47 282 282 HIS HIS A . n A 1 48 ALA 48 283 283 ALA ALA A . n A 1 49 LEU 49 284 284 LEU LEU A . n A 1 50 ASP 50 285 285 ASP ASP A . n A 1 51 SER 51 286 286 SER SER A . n A 1 52 GLU 52 287 287 GLU GLU A . n A 1 53 ASN 53 288 288 ASN ASN A . n A 1 54 MET 54 289 289 MET MET A . n A 1 55 THR 55 290 290 THR THR A . n A 1 56 LYS 56 291 291 LYS LYS A . n A 1 57 SER 57 292 292 SER SER A . n A 1 58 HIS 58 293 293 HIS HIS A . n A 1 59 GLN 59 294 294 GLN GLN A . n A 1 60 ASN 60 295 295 ASN ASN A . n A 1 61 LEU 61 296 296 LEU LEU A . n A 1 62 CYS 62 297 297 CYS CYS A . n A 1 63 THR 63 298 298 THR THR A . n A 1 64 LYS 64 299 299 LYS LYS A . n A 1 65 GLY 65 300 300 GLY GLY A . n A 1 66 GLN 66 301 301 GLN GLN A . n A 1 67 VAL 67 302 302 VAL VAL A . n A 1 68 VAL 68 303 303 VAL VAL A . n A 1 69 SER 69 304 304 SER SER A . n A 1 70 GLY 70 305 305 GLY GLY A . n A 1 71 GLN 71 306 306 GLN GLN A . n A 1 72 TYR 72 307 307 TYR TYR A . n A 1 73 ARG 73 308 308 ARG ARG A . n A 1 74 MET 74 309 309 MET MET A . n A 1 75 LEU 75 310 310 LEU LEU A . n A 1 76 ALA 76 311 311 ALA ALA A . n A 1 77 LYS 77 312 312 LYS LYS A . n A 1 78 HIS 78 313 313 HIS HIS A . n A 1 79 GLY 79 314 314 GLY GLY A . n A 1 80 GLY 80 315 315 GLY GLY A . n A 1 81 TYR 81 316 316 TYR TYR A . n A 1 82 VAL 82 317 317 VAL VAL A . n A 1 83 TRP 83 318 318 TRP TRP A . n A 1 84 LEU 84 319 319 LEU LEU A . n A 1 85 GLU 85 320 320 GLU GLU A . n A 1 86 THR 86 321 321 THR THR A . n A 1 87 GLN 87 322 322 GLN GLN A . n A 1 88 MET 88 323 323 MET MET A . n A 1 89 THR 89 324 324 THR THR A . n A 1 90 VAL 90 325 325 VAL VAL A . n A 1 91 ILE 91 326 326 ILE ILE A . n A 1 92 TYR 92 327 327 TYR TYR A . n A 1 93 ASN 93 328 328 ASN ASN A . n A 1 94 PRO 94 329 329 PRO PRO A . n A 1 95 ARG 95 330 330 ARG ARG A . n A 1 96 ASN 96 331 331 ASN ASN A . n A 1 97 LEU 97 332 332 LEU LEU A . n A 1 98 GLN 98 333 333 GLN GLN A . n A 1 99 PRO 99 334 334 PRO PRO A . n A 1 100 GLN 100 335 335 GLN GLN A . n A 1 101 CYS 101 336 336 CYS CYS A . n A 1 102 ILE 102 337 337 ILE ILE A . n A 1 103 MET 103 338 338 MET MET A . n A 1 104 ALA 104 339 339 ALA ALA A . n A 1 105 VAL 105 340 340 VAL VAL A . n A 1 106 ASN 106 341 341 ASN ASN A . n A 1 107 TYR 107 342 342 TYR TYR A . n A 1 108 VAL 108 343 343 VAL VAL A . n A 1 109 LEU 109 344 344 LEU LEU A . n A 1 110 SER 110 345 345 SER SER A . n A 1 111 GLU 111 346 346 GLU GLU A . n A 1 112 ILE 112 347 347 ILE ILE A . n A 1 113 GLU 113 348 348 GLU GLU A . n A 1 114 LYS 114 349 349 LYS LYS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 6370 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-08-17 2 'Structure model' 1 1 2017-09-20 3 'Structure model' 1 2 2019-12-04 4 'Structure model' 1 3 2021-09-22 5 'Structure model' 1 4 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' 'Author supporting evidence' 4 4 'Structure model' 'Database references' 5 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' entity 2 2 'Structure model' pdbx_audit_support 3 3 'Structure model' pdbx_audit_support 4 4 'Structure model' citation 5 4 'Structure model' database_2 6 5 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_entity.pdbx_number_of_molecules' 2 2 'Structure model' '_pdbx_audit_support.funding_organization' 3 3 'Structure model' '_pdbx_audit_support.funding_organization' 4 4 'Structure model' '_citation.country' 5 4 'Structure model' '_citation.journal_abbrev' 6 4 'Structure model' '_citation.journal_id_ASTM' 7 4 'Structure model' '_citation.journal_id_CSD' 8 4 'Structure model' '_citation.journal_id_ISSN' 9 4 'Structure model' '_citation.journal_volume' 10 4 'Structure model' '_citation.page_first' 11 4 'Structure model' '_citation.page_last' 12 4 'Structure model' '_citation.pdbx_database_id_DOI' 13 4 'Structure model' '_citation.pdbx_database_id_PubMed' 14 4 'Structure model' '_citation.title' 15 4 'Structure model' '_citation.year' 16 4 'Structure model' '_database_2.pdbx_DOI' 17 4 'Structure model' '_database_2.pdbx_database_accession' 18 5 'Structure model' '_pdbx_database_status.status_code_nmr_data' # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component 'HIF-2 alpha D1' _pdbx_nmr_exptl_sample.concentration 0.5 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling '[U-99% 13C; U-99% 15N]' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HD1 A HIS 282 ? ? OD2 A ASP 285 ? ? 1.59 2 2 HD1 A HIS 282 ? ? OD2 A ASP 285 ? ? 1.60 3 4 OE2 A GLU 320 ? ? HH A TYR 342 ? ? 1.57 4 8 OD2 A ASP 251 ? ? HZ1 A LYS 253 ? ? 1.56 5 9 HD1 A HIS 282 ? ? OD2 A ASP 285 ? ? 1.60 6 15 OD2 A ASP 251 ? ? HZ1 A LYS 253 ? ? 1.54 7 17 OE2 A GLU 271 ? ? HZ2 A LYS 312 ? ? 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 238 ? ? 70.61 124.93 2 1 LEU A 239 ? ? 172.60 104.52 3 1 ARG A 275 ? ? -125.30 -168.03 4 1 ASN A 295 ? ? -73.51 -87.45 5 1 CYS A 297 ? ? -153.06 -22.29 6 1 GLN A 306 ? ? -54.41 108.64 7 1 PRO A 334 ? ? -45.85 108.43 8 2 SER A 241 ? ? -78.17 28.43 9 2 ARG A 275 ? ? -119.12 -169.66 10 2 ASN A 295 ? ? -65.63 -88.36 11 2 LEU A 296 ? ? 68.85 -42.72 12 2 GLN A 306 ? ? -62.52 90.11 13 3 GLU A 237 ? ? -124.30 -76.49 14 3 LEU A 239 ? ? 73.35 -63.76 15 3 ASN A 295 ? ? -68.25 -83.46 16 3 LEU A 296 ? ? 56.93 -178.28 17 3 CYS A 297 ? ? 71.18 -17.35 18 4 LYS A 242 ? ? 50.34 86.67 19 4 ASN A 295 ? ? -76.09 -89.43 20 5 LEU A 239 ? ? 47.92 25.55 21 5 LYS A 242 ? ? 46.41 82.00 22 5 ARG A 275 ? ? -129.15 -166.19 23 5 ASN A 295 ? ? -73.39 -93.28 24 5 LEU A 296 ? ? 49.55 27.81 25 6 ARG A 275 ? ? -127.69 -169.44 26 6 ASN A 295 ? ? -73.66 -101.30 27 6 LEU A 296 ? ? 57.35 19.41 28 6 GLN A 306 ? ? -67.38 93.63 29 6 PRO A 334 ? ? -45.25 108.92 30 7 GLU A 237 ? ? -83.94 34.93 31 7 LYS A 242 ? ? 52.48 72.23 32 7 LEU A 296 ? ? -69.03 75.11 33 7 CYS A 297 ? ? -179.71 -24.56 34 7 PRO A 334 ? ? -47.09 107.76 35 8 GLU A 237 ? ? -102.46 -166.74 36 8 LEU A 296 ? ? -67.96 75.20 37 8 CYS A 297 ? ? -176.30 -20.67 38 8 GLN A 306 ? ? -67.18 89.44 39 9 PHE A 238 ? ? 70.04 151.23 40 9 LEU A 239 ? ? 66.33 77.21 41 9 SER A 241 ? ? -130.51 -48.53 42 9 LYS A 242 ? ? 39.36 82.32 43 9 ARG A 275 ? ? -126.75 -163.56 44 9 LEU A 296 ? ? 178.85 -31.93 45 10 LEU A 239 ? ? -73.91 37.45 46 10 SER A 241 ? ? -75.67 27.68 47 10 ASN A 295 ? ? -71.34 -83.06 48 10 CYS A 297 ? ? -146.40 -27.01 49 10 GLN A 306 ? ? -51.61 107.45 50 10 PRO A 334 ? ? -44.96 108.76 51 11 LEU A 239 ? ? 66.43 112.63 52 11 CYS A 297 ? ? 77.12 -17.29 53 11 GLN A 335 ? ? -100.37 -60.37 54 12 LEU A 239 ? ? -158.22 7.08 55 12 LYS A 242 ? ? 53.51 84.23 56 12 ARG A 275 ? ? -126.40 -169.08 57 12 ASN A 295 ? ? -70.67 -86.46 58 12 LEU A 296 ? ? 62.11 -69.20 59 12 PRO A 334 ? ? -44.50 108.44 60 13 PHE A 238 ? ? -167.96 -72.23 61 13 LEU A 239 ? ? -112.80 73.56 62 13 CYS A 297 ? ? -176.26 -19.06 63 13 PRO A 334 ? ? -52.79 99.09 64 14 PHE A 238 ? ? -174.03 -54.64 65 14 MET A 250 ? ? -69.90 13.53 66 14 ARG A 275 ? ? -122.18 -167.13 67 14 ASN A 295 ? ? -75.83 -92.89 68 14 PRO A 334 ? ? -47.29 105.34 69 15 GLU A 237 ? ? -92.46 33.08 70 15 ASN A 295 ? ? -69.77 -88.23 71 16 GLU A 237 ? ? 72.28 -60.13 72 16 LYS A 242 ? ? -102.60 73.60 73 16 ARG A 275 ? ? -127.20 -167.01 74 17 GLU A 237 ? ? -90.21 36.26 75 17 LEU A 239 ? ? 59.21 -82.10 76 17 LYS A 242 ? ? 45.90 79.78 77 17 ARG A 275 ? ? -125.43 -168.90 78 17 ASN A 295 ? ? -75.92 -96.16 79 17 LEU A 296 ? ? 57.70 18.73 80 17 GLN A 335 ? ? -94.26 -60.91 81 18 LEU A 239 ? ? 70.44 -70.73 82 18 LYS A 242 ? ? 46.16 77.46 83 18 ARG A 275 ? ? -124.66 -167.68 84 18 LEU A 296 ? ? -69.95 75.56 85 18 CYS A 297 ? ? -178.18 -19.34 86 18 GLN A 306 ? ? -52.94 109.52 87 18 PRO A 334 ? ? -47.24 109.01 88 19 LEU A 239 ? ? -172.89 138.98 89 19 ARG A 275 ? ? -120.12 -167.27 90 19 PRO A 334 ? ? -50.84 101.19 91 20 ARG A 275 ? ? -123.51 -166.76 92 20 CYS A 297 ? ? 78.06 -17.87 93 20 PRO A 334 ? ? -44.47 108.24 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' CA95471 1 'Cancer Prevention and Research Institute of Texas (CPRIT)' 'United States' RP130513 2 #