HEADER TRANSFERASE/TRANSFERASE INHIBITOR 20-JUN-16 5KJN TITLE SMYD2 IN COMPLEX WITH AZ506 COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-LYSINE METHYLTRANSFERASE SMYD2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HSKM-B,HISTONE METHYLTRANSFERASE SMYD2,LYSINE N- COMPND 5 METHYLTRANSFERASE 3C,SET AND MYND DOMAIN-CONTAINING PROTEIN 2; COMPND 6 EC: 2.1.1.-,2.1.1.43; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMYD2, KMT3C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANFERASE, HISTONE METHYLTRANSFERASE, INHIBITOR, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.FERGUSON REVDAT 3 27-SEP-23 5KJN 1 REMARK REVDAT 2 04-JAN-17 5KJN 1 JRNL REVDAT 1 07-DEC-16 5KJN 0 JRNL AUTH S.D.COWEN,D.RUSSELL,L.A.DAKIN,H.CHEN,N.A.LARSEN,R.GODIN, JRNL AUTH 2 S.THRONER,X.ZHENG,A.MOLINA,J.WU,T.CHEUNG,T.HOWARD, JRNL AUTH 3 R.GARCIA-ARENAS,N.KEEN,C.S.PENDLETON,J.A.PIETENPOL, JRNL AUTH 4 A.D.FERGUSON JRNL TITL DESIGN, SYNTHESIS, AND BIOLOGICAL ACTIVITY OF SUBSTRATE JRNL TITL 2 COMPETITIVE SMYD2 INHIBITORS. JRNL REF J. MED. CHEM. V. 59 11079 2016 JRNL REFN ISSN 1520-4804 JRNL PMID 28002961 REMARK 2 REMARK 2 RESOLUTION. 2.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 16688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 845 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.72 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.89 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2819 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2220 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2682 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.86 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 137 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3453 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.72730 REMARK 3 B22 (A**2) : 0.72730 REMARK 3 B33 (A**2) : -1.45470 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.290 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.552 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.281 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.570 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.286 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3636 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4900 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1306 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 92 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 552 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3636 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 457 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4097 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.19 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.09 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.49 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -48.8895 -18.5164 -25.4120 REMARK 3 T TENSOR REMARK 3 T11: -0.0819 T22: -0.0602 REMARK 3 T33: -0.1256 T12: 0.0361 REMARK 3 T13: -0.0146 T23: -0.0650 REMARK 3 L TENSOR REMARK 3 L11: 1.4774 L22: 1.8750 REMARK 3 L33: 1.0405 L12: -0.3805 REMARK 3 L13: 0.1353 L23: 0.1880 REMARK 3 S TENSOR REMARK 3 S11: 0.0535 S12: -0.0580 S13: -0.0106 REMARK 3 S21: 0.0184 S22: -0.1223 S23: 0.1794 REMARK 3 S31: 0.1292 S32: 0.0808 S33: 0.0688 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KJN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222361. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9730 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16689 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.720 REMARK 200 RESOLUTION RANGE LOW (A) : 54.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.44400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3S7B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.1 M TRIS-HCL, 5% REMARK 280 ETHANOL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 77.43550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.43550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.14300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 77.43550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.43550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 26.14300 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 77.43550 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 77.43550 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 26.14300 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 77.43550 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 77.43550 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 26.14300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 17 14.61 -140.03 REMARK 500 ARG A 67 -76.20 -78.57 REMARK 500 CYS A 90 -73.87 -46.32 REMARK 500 ASN A 101 50.20 -144.22 REMARK 500 CYS A 264 172.60 -58.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 511 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 52 SG REMARK 620 2 CYS A 55 SG 105.6 REMARK 620 3 CYS A 74 SG 103.3 95.6 REMARK 620 4 CYS A 78 SG 113.9 115.3 120.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 512 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 65 SG REMARK 620 2 CYS A 68 SG 114.9 REMARK 620 3 HIS A 86 NE2 106.6 101.6 REMARK 620 4 CYS A 90 SG 109.2 121.3 100.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 508 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 190 OE1 REMARK 620 2 GLU A 190 OE2 41.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 513 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 209 SG REMARK 620 2 CYS A 262 SG 114.3 REMARK 620 3 CYS A 264 SG 109.8 103.2 REMARK 620 4 CYS A 267 SG 93.7 119.1 116.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU3 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU3 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU3 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU3 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU3 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU3 A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6TL A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 513 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KJK RELATED DB: PDB REMARK 900 RELATED ID: 5KJL RELATED DB: PDB REMARK 900 RELATED ID: 5KJM RELATED DB: PDB DBREF 5KJN A 5 433 UNP Q9NRG4 SMYD2_HUMAN 5 433 SEQADV 5KJN GLU A 165 UNP Q9NRG4 GLY 165 ENGINEERED MUTATION SEQRES 1 A 429 GLY LEU GLY GLY LEU GLU ARG PHE CYS SER PRO GLY LYS SEQRES 2 A 429 GLY ARG GLY LEU ARG ALA LEU GLN PRO PHE GLN VAL GLY SEQRES 3 A 429 ASP LEU LEU PHE SER CYS PRO ALA TYR ALA TYR VAL LEU SEQRES 4 A 429 THR VAL ASN GLU ARG GLY ASN HIS CYS GLU TYR CYS PHE SEQRES 5 A 429 THR ARG LYS GLU GLY LEU SER LYS CYS GLY ARG CYS LYS SEQRES 6 A 429 GLN ALA PHE TYR CYS ASN VAL GLU CYS GLN LYS GLU ASP SEQRES 7 A 429 TRP PRO MET HIS LYS LEU GLU CYS SER PRO MET VAL VAL SEQRES 8 A 429 PHE GLY GLU ASN TRP ASN PRO SER GLU THR VAL ARG LEU SEQRES 9 A 429 THR ALA ARG ILE LEU ALA LYS GLN LYS ILE HIS PRO GLU SEQRES 10 A 429 ARG THR PRO SER GLU LYS LEU LEU ALA VAL LYS GLU PHE SEQRES 11 A 429 GLU SER HIS LEU ASP LYS LEU ASP ASN GLU LYS LYS ASP SEQRES 12 A 429 LEU ILE GLN SER ASP ILE ALA ALA LEU HIS HIS PHE TYR SEQRES 13 A 429 SER LYS HIS LEU GLU PHE PRO ASP ASN ASP SER LEU VAL SEQRES 14 A 429 VAL LEU PHE ALA GLN VAL ASN CYS ASN GLY PHE THR ILE SEQRES 15 A 429 GLU ASP GLU GLU LEU SER HIS LEU GLY SER ALA ILE PHE SEQRES 16 A 429 PRO ASP VAL ALA LEU MET ASN HIS SER CYS CYS PRO ASN SEQRES 17 A 429 VAL ILE VAL THR TYR LYS GLY THR LEU ALA GLU VAL ARG SEQRES 18 A 429 ALA VAL GLN GLU ILE LYS PRO GLY GLU GLU VAL PHE THR SEQRES 19 A 429 SER TYR ILE ASP LEU LEU TYR PRO THR GLU ASP ARG ASN SEQRES 20 A 429 ASP ARG LEU ARG ASP SER TYR PHE PHE THR CYS GLU CYS SEQRES 21 A 429 GLN GLU CYS THR THR LYS ASP LYS ASP LYS ALA LYS VAL SEQRES 22 A 429 GLU ILE ARG LYS LEU SER ASP PRO PRO LYS ALA GLU ALA SEQRES 23 A 429 ILE ARG ASP MET VAL ARG TYR ALA ARG ASN VAL ILE GLU SEQRES 24 A 429 GLU PHE ARG ARG ALA LYS HIS TYR LYS SER PRO SER GLU SEQRES 25 A 429 LEU LEU GLU ILE CYS GLU LEU SER GLN GLU LYS MET SER SEQRES 26 A 429 SER VAL PHE GLU ASP SER ASN VAL TYR MET LEU HIS MET SEQRES 27 A 429 MET TYR GLN ALA MET GLY VAL CYS LEU TYR MET GLN ASP SEQRES 28 A 429 TRP GLU GLY ALA LEU GLN TYR GLY GLN LYS ILE ILE LYS SEQRES 29 A 429 PRO TYR SER LYS HIS TYR PRO LEU TYR SER LEU ASN VAL SEQRES 30 A 429 ALA SER MET TRP LEU LYS LEU GLY ARG LEU TYR MET GLY SEQRES 31 A 429 LEU GLU HIS LYS ALA ALA GLY GLU LYS ALA LEU LYS LYS SEQRES 32 A 429 ALA ILE ALA ILE MET GLU VAL ALA HIS GLY LYS ASP HIS SEQRES 33 A 429 PRO TYR ILE SER GLU ILE LYS GLN GLU ILE GLU SER HIS HET SAM A 501 27 HET BU3 A 502 6 HET BU3 A 503 6 HET BU3 A 504 6 HET BU3 A 505 6 HET BU3 A 506 6 HET BU3 A 507 6 HET NA A 508 1 HET NA A 509 1 HET 6TL A 510 40 HET ZN A 511 1 HET ZN A 512 1 HET ZN A 513 1 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM BU3 (R,R)-2,3-BUTANEDIOL HETNAM NA SODIUM ION HETNAM 6TL 5-[2-[4-[2-(1~{H}-INDOL-3-YL)ETHYL]PIPERAZIN-1- HETNAM 2 6TL YL]PHENYL]-~{N}-(3-PYRROLIDIN-1-YLPROPYL)PYRIDINE-3- HETNAM 3 6TL CARBOXAMIDE HETNAM ZN ZINC ION HETSYN 6TL AZ506 FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 BU3 6(C4 H10 O2) FORMUL 9 NA 2(NA 1+) FORMUL 11 6TL C33 H40 N6 O FORMUL 12 ZN 3(ZN 2+) FORMUL 15 HOH *69(H2 O) HELIX 1 AA1 VAL A 45 ARG A 48 5 4 HELIX 2 AA2 ASN A 75 LYS A 87 1 13 HELIX 3 AA3 GLU A 89 PHE A 96 1 8 HELIX 4 AA4 SER A 103 HIS A 119 1 17 HELIX 5 AA5 ALA A 130 PHE A 134 5 5 HELIX 6 AA6 HIS A 137 LEU A 141 5 5 HELIX 7 AA7 ASP A 142 TYR A 160 1 19 HELIX 8 AA8 ASP A 168 GLY A 183 1 16 HELIX 9 AA9 ASP A 201 MET A 205 5 5 HELIX 10 AB1 PRO A 246 TYR A 258 1 13 HELIX 11 AB2 CYS A 264 LYS A 270 1 7 HELIX 12 AB3 LYS A 272 VAL A 277 1 6 HELIX 13 AB4 LYS A 287 LYS A 309 1 23 HELIX 14 AB5 SER A 313 SER A 329 1 17 HELIX 15 AB6 ASN A 336 MET A 353 1 18 HELIX 16 AB7 ASP A 355 TYR A 374 1 20 HELIX 17 AB8 SER A 378 LEU A 395 1 18 HELIX 18 AB9 HIS A 397 HIS A 416 1 20 HELIX 19 AC1 HIS A 420 SER A 432 1 13 SHEET 1 AA1 2 LEU A 9 CYS A 13 0 SHEET 2 AA1 2 ARG A 19 ALA A 23 -1 O GLY A 20 N PHE A 12 SHEET 1 AA2 3 LEU A 32 PRO A 37 0 SHEET 2 AA2 3 LEU A 221 ALA A 226 -1 O VAL A 224 N LEU A 33 SHEET 3 AA2 3 VAL A 213 LYS A 218 -1 N THR A 216 O GLU A 223 SHEET 1 AA3 3 ALA A 40 LEU A 43 0 SHEET 2 AA3 3 HIS A 193 ILE A 198 -1 O ILE A 198 N ALA A 40 SHEET 3 AA3 3 PHE A 184 GLU A 187 -1 N ILE A 186 O LEU A 194 SHEET 1 AA4 2 SER A 63 LYS A 64 0 SHEET 2 AA4 2 PHE A 72 TYR A 73 -1 O TYR A 73 N SER A 63 SHEET 1 AA5 2 ASN A 206 HIS A 207 0 SHEET 2 AA5 2 PHE A 237 THR A 238 1 O THR A 238 N ASN A 206 LINK SG CYS A 52 ZN ZN A 511 1555 1555 2.25 LINK SG CYS A 55 ZN ZN A 511 1555 1555 2.41 LINK SG CYS A 65 ZN ZN A 512 1555 1555 2.36 LINK SG CYS A 68 ZN ZN A 512 1555 1555 2.21 LINK SG CYS A 74 ZN ZN A 511 1555 1555 2.45 LINK SG CYS A 78 ZN ZN A 511 1555 1555 2.33 LINK NE2 HIS A 86 ZN ZN A 512 1555 1555 2.17 LINK SG CYS A 90 ZN ZN A 512 1555 1555 2.33 LINK OE1 GLU A 190 NA NA A 508 1555 1555 3.16 LINK OE2 GLU A 190 NA NA A 508 1555 1555 3.10 LINK SG CYS A 209 ZN ZN A 513 1555 1555 2.47 LINK OD1 ASP A 242 NA NA A 509 1555 1555 2.90 LINK SG CYS A 262 ZN ZN A 513 1555 1555 2.46 LINK SG CYS A 264 ZN ZN A 513 1555 1555 2.27 LINK SG CYS A 267 ZN ZN A 513 1555 1555 2.17 SITE 1 AC1 17 GLY A 16 LYS A 17 ARG A 19 GLU A 135 SITE 2 AC1 17 HIS A 137 LYS A 162 CYS A 181 ASN A 182 SITE 3 AC1 17 ALA A 203 LEU A 204 MET A 205 ASN A 206 SITE 4 AC1 17 HIS A 207 TYR A 240 TYR A 258 PHE A 260 SITE 5 AC1 17 6TL A 510 SITE 1 AC2 4 ALA A 38 TYR A 39 LYS A 115 HOH A 605 SITE 1 AC3 2 TRP A 356 GLY A 394 SITE 1 AC4 4 ARG A 122 THR A 123 PRO A 124 LYS A 127 SITE 1 AC5 2 ARG A 67 HOH A 619 SITE 1 AC6 4 GLU A 104 THR A 105 SER A 196 6TL A 510 SITE 1 AC7 3 ASP A 188 GLU A 189 GLU A 190 SITE 1 AC8 1 GLU A 190 SITE 1 AC9 1 ASP A 242 SITE 1 AD1 14 LYS A 145 VAL A 179 ASN A 180 ASN A 182 SITE 2 AD1 14 GLY A 183 PHE A 184 THR A 185 TYR A 240 SITE 3 AD1 14 SER A 257 TYR A 258 PHE A 259 SAM A 501 SITE 4 AD1 14 BU3 A 506 HOH A 611 SITE 1 AD2 4 CYS A 52 CYS A 55 CYS A 74 CYS A 78 SITE 1 AD3 4 CYS A 65 CYS A 68 HIS A 86 CYS A 90 SITE 1 AD4 4 CYS A 209 CYS A 262 CYS A 264 CYS A 267 CRYST1 154.871 154.871 52.286 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006457 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006457 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019126 0.00000