HEADER ISOMERASE 22-JUN-16 5KKP TITLE CRYSTAL STRUCTURE OF HUMAN PSEUDOURIDYLATE SYNTHASE 7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PSEUDOURIDYLATE SYNTHASE 7; COMPND 3 CHAIN: A; COMPND 4 EC: 5.4.99.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PUS7, KIAA1897; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) CODON PLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS PUS7, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 2 ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.DONG,H.ZENG,J.R.WALKER,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 P.J.BROWN,H.WU,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 1 17-AUG-16 5KKP 0 JRNL AUTH H.ZENG,A.DONG,J.R.WALKER,C.BOUNTRA,C.H.ARROWSMITH, JRNL AUTH 2 A.M.EDWARDS,P.J.BROWN,H.WU, JRNL AUTH 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF HUMAN PSEUDOURIDYLATE SYNTHASE 7 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 27570 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.520 REMARK 3 FREE R VALUE TEST SET COUNT : 695 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.33 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.68 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2534 REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2476 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.29 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 58 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3899 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 80 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.90250 REMARK 3 B22 (A**2) : 0.41890 REMARK 3 B33 (A**2) : 6.48350 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.300 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.275 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.223 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.279 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.226 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4026 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5462 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1363 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 86 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 594 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4026 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 540 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4486 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.15 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.11 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 32.2466 53.2764 17.3030 REMARK 3 T TENSOR REMARK 3 T11: -0.1029 T22: -0.1281 REMARK 3 T33: -0.1637 T12: 0.0141 REMARK 3 T13: -0.0296 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.6458 L22: 1.1243 REMARK 3 L33: 1.1127 L12: -0.1872 REMARK 3 L13: -0.4980 L23: 0.0972 REMARK 3 S TENSOR REMARK 3 S11: 0.0413 S12: 0.0934 S13: 0.0366 REMARK 3 S21: -0.0611 S22: 0.0234 S23: -0.0901 REMARK 3 S31: -0.0252 S32: 0.0027 S33: -0.0647 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 DUE TO AMBIGUOUS ELECTRON DENSITY, IT IS POSSIBLE THE REGION FROM REMARK 3 RESIDUE 163 TO 178 MAY BE ASSIGNED TO THE SEQUENCE INCORRECTLY. REMARK 4 REMARK 4 5KKP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222282. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97901 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27643 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 8.80 REMARK 200 R MERGE FOR SHELL (I) : 0.82300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG 3350, 0.2 M SODIUM FORMATE, REMARK 280 PH7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.17800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.08950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.70000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.08950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.17800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.70000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 99 REMARK 465 SER A 100 REMARK 465 PHE A 101 REMARK 465 ALA A 102 REMARK 465 ASP A 103 REMARK 465 MSE A 104 REMARK 465 MSE A 105 REMARK 465 LYS A 106 REMARK 465 HIS A 107 REMARK 465 ASP A 159 REMARK 465 GLU A 160 REMARK 465 GLU A 161 REMARK 465 ASP A 162 REMARK 465 LEU A 179 REMARK 465 GLU A 180 REMARK 465 GLU A 181 REMARK 465 LEU A 182 REMARK 465 GLN A 183 REMARK 465 LEU A 184 REMARK 465 PHE A 185 REMARK 465 LYS A 186 REMARK 465 ASN A 187 REMARK 465 LYS A 188 REMARK 465 GLU A 189 REMARK 465 ALA A 236 REMARK 465 ALA A 237 REMARK 465 GLY A 238 REMARK 465 LYS A 239 REMARK 465 LYS A 240 REMARK 465 ALA A 241 REMARK 465 LEU A 242 REMARK 465 ALA A 243 REMARK 465 ASN A 244 REMARK 465 PRO A 245 REMARK 465 ARG A 246 REMARK 465 LYS A 247 REMARK 465 HIS A 248 REMARK 465 SER A 249 REMARK 465 THR A 382 REMARK 465 THR A 383 REMARK 465 ALA A 413 REMARK 465 GLU A 414 REMARK 465 LYS A 650 REMARK 465 ASN A 651 REMARK 465 GLN A 652 REMARK 465 THR A 653 REMARK 465 GLN A 654 REMARK 465 LEU A 655 REMARK 465 ASN A 656 REMARK 465 THR A 657 REMARK 465 THR A 658 REMARK 465 TRP A 659 REMARK 465 LEU A 660 REMARK 465 ARG A 661 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 133 NE CZ NH1 NH2 REMARK 470 ARG A 147 NE CZ NH1 NH2 REMARK 470 VAL A 158 CG1 CG2 REMARK 470 ASP A 166 CG OD1 OD2 REMARK 470 ILE A 167 CG1 CG2 CD1 REMARK 470 VAL A 170 CG1 CG2 REMARK 470 THR A 172 OG1 CG2 REMARK 470 GLU A 174 CG CD OE1 OE2 REMARK 470 GLU A 175 CG CD OE1 OE2 REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 GLN A 177 CG CD OE1 NE2 REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 THR A 190 OG1 CG2 REMARK 470 VAL A 196 CG1 CG2 REMARK 470 ILE A 197 CG1 CG2 CD1 REMARK 470 GLU A 198 CG CD OE1 OE2 REMARK 470 THR A 200 OG1 CG2 REMARK 470 LYS A 201 CE NZ REMARK 470 GLU A 202 CG CD OE1 OE2 REMARK 470 LYS A 203 CG CD CE NZ REMARK 470 ILE A 206 CG1 CG2 CD1 REMARK 470 ILE A 211 CG1 CG2 CD1 REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 SER A 213 OG REMARK 470 LEU A 214 CG CD1 CD2 REMARK 470 PHE A 215 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 219 CG CD OE1 OE2 REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 LYS A 228 CD CE NZ REMARK 470 LYS A 229 NZ REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 LYS A 267 CD CE NZ REMARK 470 ARG A 281 NE CZ NH1 NH2 REMARK 470 GLN A 311 CG CD OE1 NE2 REMARK 470 LYS A 318 CG CD CE NZ REMARK 470 GLN A 360 CD OE1 NE2 REMARK 470 GLU A 368 CG CD OE1 OE2 REMARK 470 LYS A 408 CG CD CE NZ REMARK 470 SER A 411 OG REMARK 470 LYS A 415 CE NZ REMARK 470 LYS A 420 CE NZ REMARK 470 GLU A 423 CG CD OE1 OE2 REMARK 470 LYS A 437 CE NZ REMARK 470 LYS A 441 CG CD CE NZ REMARK 470 ARG A 442 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 454 CD CE NZ REMARK 470 LYS A 458 CE NZ REMARK 470 LYS A 490 CG CD CE NZ REMARK 470 LYS A 498 CD CE NZ REMARK 470 LYS A 507 CG CD CE NZ REMARK 470 GLU A 516 CD OE1 OE2 REMARK 470 ASP A 517 CG OD1 OD2 REMARK 470 VAL A 519 CG1 CG2 REMARK 470 LYS A 540 CE NZ REMARK 470 LYS A 609 CE NZ REMARK 470 VAL A 613 CG1 CG2 REMARK 470 SER A 616 OG REMARK 470 GLU A 617 CG CD OE1 OE2 REMARK 470 ASP A 646 CG OD1 OD2 REMARK 470 THR A 647 OG1 CG2 REMARK 470 ILE A 649 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 177 -80.62 -94.49 REMARK 500 ALA A 297 172.14 174.30 REMARK 500 ASN A 373 42.72 -72.04 REMARK 500 PRO A 386 99.94 -68.06 REMARK 500 LEU A 497 36.62 -94.27 REMARK 500 HIS A 541 -169.33 -105.68 REMARK 500 SER A 648 -70.71 -126.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 701 DBREF 5KKP A 99 661 UNP Q96PZ0 PUS7_HUMAN 99 661 SEQRES 1 A 563 GLU SER PHE ALA ASP MSE MSE LYS HIS GLY LEU THR GLU SEQRES 2 A 563 ALA ASP VAL GLY ILE THR LYS PHE VAL SER SER HIS GLN SEQRES 3 A 563 GLY PHE SER GLY ILE LEU LYS GLU ARG TYR SER ASP PHE SEQRES 4 A 563 VAL VAL HIS GLU ILE GLY LYS ASP GLY ARG ILE SER HIS SEQRES 5 A 563 LEU ASN ASP LEU SER ILE PRO VAL ASP GLU GLU ASP PRO SEQRES 6 A 563 SER GLU ASP ILE PHE THR VAL LEU THR ALA GLU GLU LYS SEQRES 7 A 563 GLN ARG LEU GLU GLU LEU GLN LEU PHE LYS ASN LYS GLU SEQRES 8 A 563 THR SER VAL ALA ILE GLU VAL ILE GLU ASP THR LYS GLU SEQRES 9 A 563 LYS ARG THR ILE ILE HIS GLN ALA ILE LYS SER LEU PHE SEQRES 10 A 563 PRO GLY LEU GLU THR LYS THR GLU ASP ARG GLU GLY LYS SEQRES 11 A 563 LYS TYR ILE VAL ALA TYR HIS ALA ALA GLY LYS LYS ALA SEQRES 12 A 563 LEU ALA ASN PRO ARG LYS HIS SER TRP PRO LYS SER ARG SEQRES 13 A 563 GLY SER TYR CYS HIS PHE VAL LEU TYR LYS GLU ASN LYS SEQRES 14 A 563 ASP THR MSE ASP ALA ILE ASN VAL LEU SER LYS TYR LEU SEQRES 15 A 563 ARG VAL LYS PRO ASN ILE PHE SER TYR MSE GLY THR LYS SEQRES 16 A 563 ASP LYS ARG ALA ILE THR VAL GLN GLU ILE ALA VAL LEU SEQRES 17 A 563 LYS ILE THR ALA GLN ARG LEU ALA HIS LEU ASN LYS CYS SEQRES 18 A 563 LEU MSE ASN PHE LYS LEU GLY ASN PHE SER TYR GLN LYS SEQRES 19 A 563 ASN PRO LEU LYS LEU GLY GLU LEU GLN GLY ASN HIS PHE SEQRES 20 A 563 THR VAL VAL LEU ARG ASN ILE THR GLY THR ASP ASP GLN SEQRES 21 A 563 VAL GLN GLN ALA MSE ASN SER LEU LYS GLU ILE GLY PHE SEQRES 22 A 563 ILE ASN TYR TYR GLY MSE GLN ARG PHE GLY THR THR ALA SEQRES 23 A 563 VAL PRO THR TYR GLN VAL GLY ARG ALA ILE LEU GLN ASN SEQRES 24 A 563 SER TRP THR GLU VAL MSE ASP LEU ILE LEU LYS PRO ARG SEQRES 25 A 563 SER GLY ALA GLU LYS GLY TYR LEU VAL LYS CYS ARG GLU SEQRES 26 A 563 GLU TRP ALA LYS THR LYS ASP PRO THR ALA ALA LEU ARG SEQRES 27 A 563 LYS LEU PRO VAL LYS ARG CYS VAL GLU GLY GLN LEU LEU SEQRES 28 A 563 ARG GLY LEU SER LYS TYR GLY MSE LYS ASN ILE VAL SER SEQRES 29 A 563 ALA PHE GLY ILE ILE PRO ARG ASN ASN ARG LEU MSE TYR SEQRES 30 A 563 ILE HIS SER TYR GLN SER TYR VAL TRP ASN ASN MSE VAL SEQRES 31 A 563 SER LYS ARG ILE GLU ASP TYR GLY LEU LYS PRO VAL PRO SEQRES 32 A 563 GLY ASP LEU VAL LEU LYS GLY ALA THR ALA THR TYR ILE SEQRES 33 A 563 GLU GLU ASP ASP VAL ASN ASN TYR SER ILE HIS ASP VAL SEQRES 34 A 563 VAL MSE PRO LEU PRO GLY PHE ASP VAL ILE TYR PRO LYS SEQRES 35 A 563 HIS LYS ILE GLN GLU ALA TYR ARG GLU MSE LEU THR ALA SEQRES 36 A 563 ASP ASN LEU ASP ILE ASP ASN MSE ARG HIS LYS ILE ARG SEQRES 37 A 563 ASP TYR SER LEU SER GLY ALA TYR ARG LYS ILE ILE ILE SEQRES 38 A 563 ARG PRO GLN ASN VAL SER TRP GLU VAL VAL ALA TYR ASP SEQRES 39 A 563 ASP PRO LYS ILE PRO LEU PHE ASN THR ASP VAL ASP ASN SEQRES 40 A 563 LEU GLU GLY LYS THR PRO PRO VAL PHE ALA SER GLU GLY SEQRES 41 A 563 LYS TYR ARG ALA LEU LYS MSE ASP PHE SER LEU PRO PRO SEQRES 42 A 563 SER THR TYR ALA THR MSE ALA ILE ARG GLU VAL LEU LYS SEQRES 43 A 563 MSE ASP THR SER ILE LYS ASN GLN THR GLN LEU ASN THR SEQRES 44 A 563 THR TRP LEU ARG MODRES 5KKP MSE A 270 MET MODIFIED RESIDUE MODRES 5KKP MSE A 290 MET MODIFIED RESIDUE MODRES 5KKP MSE A 321 MET MODIFIED RESIDUE MODRES 5KKP MSE A 363 MET MODIFIED RESIDUE MODRES 5KKP MSE A 377 MET MODIFIED RESIDUE MODRES 5KKP MSE A 403 MET MODIFIED RESIDUE MODRES 5KKP MSE A 457 MET MODIFIED RESIDUE MODRES 5KKP MSE A 474 MET MODIFIED RESIDUE MODRES 5KKP MSE A 487 MET MODIFIED RESIDUE MODRES 5KKP MSE A 529 MET MODIFIED RESIDUE MODRES 5KKP MSE A 550 MET MODIFIED RESIDUE MODRES 5KKP MSE A 561 MET MODIFIED RESIDUE MODRES 5KKP MSE A 625 MET MODIFIED RESIDUE MODRES 5KKP MSE A 637 MET MODIFIED RESIDUE MODRES 5KKP MSE A 645 MET MODIFIED RESIDUE HET MSE A 270 8 HET MSE A 290 8 HET MSE A 321 8 HET MSE A 363 8 HET MSE A 377 8 HET MSE A 403 8 HET MSE A 457 8 HET MSE A 474 8 HET MSE A 487 8 HET MSE A 529 8 HET MSE A 550 8 HET MSE A 561 8 HET MSE A 625 8 HET MSE A 637 8 HET MSE A 645 16 HET EDO A 701 4 HET UNX A 702 1 HET UNX A 703 1 HET UNX A 704 1 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM UNX UNKNOWN ATOM OR ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 15(C5 H11 N O2 SE) FORMUL 2 EDO C2 H6 O2 FORMUL 3 UNX 3(X) FORMUL 6 HOH *80(H2 O) HELIX 1 AA1 GLU A 111 GLY A 115 5 5 HELIX 2 AA2 ARG A 133 SER A 135 5 3 HELIX 3 AA3 GLU A 165 ARG A 178 1 14 HELIX 4 AA4 THR A 200 LEU A 214 1 15 HELIX 5 AA5 ASP A 268 ARG A 281 1 14 HELIX 6 AA6 LYS A 283 ASN A 285 5 3 HELIX 7 AA7 THR A 309 LEU A 316 1 8 HELIX 8 AA8 ASN A 317 LEU A 320 5 4 HELIX 9 AA9 THR A 355 ILE A 369 1 15 HELIX 10 AB1 GLY A 376 GLY A 381 5 6 HELIX 11 AB2 PRO A 386 GLN A 396 1 11 HELIX 12 AB3 SER A 398 LYS A 408 1 11 HELIX 13 AB4 GLY A 416 LYS A 429 1 14 HELIX 14 AB5 ASP A 430 ARG A 436 1 7 HELIX 15 AB6 CYS A 443 GLY A 456 1 14 HELIX 16 AB7 ASN A 459 GLY A 465 1 7 HELIX 17 AB8 PRO A 468 GLY A 496 1 29 HELIX 18 AB9 ASP A 518 TYR A 522 5 5 HELIX 19 AC1 SER A 523 HIS A 525 5 3 HELIX 20 AC2 LYS A 542 ASP A 554 1 13 HELIX 21 AC3 ILE A 565 SER A 569 5 5 HELIX 22 AC4 THR A 601 GLY A 608 1 8 HELIX 23 AC5 TYR A 634 LYS A 644 1 11 SHEET 1 AA1 4 PHE A 287 TYR A 289 0 SHEET 2 AA1 4 ILE A 298 LEU A 306 -1 O ALA A 304 N SER A 288 SHEET 3 AA1 4 TYR A 257 GLU A 265 -1 N LEU A 262 O GLN A 301 SHEET 4 AA1 4 PHE A 323 GLN A 331 -1 O GLN A 331 N TYR A 257 SHEET 1 AA2 6 PHE A 287 TYR A 289 0 SHEET 2 AA2 6 ILE A 298 LEU A 306 -1 O ALA A 304 N SER A 288 SHEET 3 AA2 6 PHE A 137 ILE A 142 1 N GLU A 141 O VAL A 300 SHEET 4 AA2 6 GLY A 342 LEU A 349 -1 O HIS A 344 N HIS A 140 SHEET 5 AA2 6 TYR A 620 LEU A 629 -1 O PHE A 627 N PHE A 345 SHEET 6 AA2 6 GLN A 582 TYR A 591 -1 N TYR A 591 O TYR A 620 SHEET 1 AA3 3 VAL A 192 GLU A 195 0 SHEET 2 AA3 3 LYS A 228 TYR A 234 -1 O ILE A 231 N ILE A 194 SHEET 3 AA3 3 GLU A 219 ARG A 225 -1 N LYS A 221 O VAL A 232 SHEET 1 AA4 2 PHE A 371 ILE A 372 0 SHEET 2 AA4 2 ILE A 578 ILE A 579 -1 O ILE A 579 N PHE A 371 SHEET 1 AA5 4 THR A 510 TYR A 513 0 SHEET 2 AA5 4 LEU A 504 LYS A 507 -1 N VAL A 505 O THR A 512 SHEET 3 AA5 4 VAL A 527 LEU A 531 -1 O VAL A 528 N LEU A 504 SHEET 4 AA5 4 ALA A 573 LYS A 576 -1 O ALA A 573 N LEU A 531 LINK C THR A 269 N MSE A 270 1555 1555 1.34 LINK C MSE A 270 N ASP A 271 1555 1555 1.33 LINK C TYR A 289 N MSE A 290 1555 1555 1.34 LINK C MSE A 290 N GLY A 291 1555 1555 1.31 LINK C LEU A 320 N MSE A 321 1555 1555 1.34 LINK C MSE A 321 N ASN A 322 1555 1555 1.34 LINK C ALA A 362 N MSE A 363 1555 1555 1.34 LINK C MSE A 363 N ASN A 364 1555 1555 1.36 LINK C GLY A 376 N MSE A 377 1555 1555 1.36 LINK C MSE A 377 N GLN A 378 1555 1555 1.34 LINK C VAL A 402 N MSE A 403 1555 1555 1.34 LINK C MSE A 403 N ASP A 404 1555 1555 1.35 LINK C GLY A 456 N MSE A 457 1555 1555 1.34 LINK C MSE A 457 N LYS A 458 1555 1555 1.34 LINK C LEU A 473 N MSE A 474 1555 1555 1.33 LINK C MSE A 474 N TYR A 475 1555 1555 1.35 LINK C ASN A 486 N MSE A 487 1555 1555 1.32 LINK C MSE A 487 N VAL A 488 1555 1555 1.33 LINK C VAL A 528 N MSE A 529 1555 1555 1.34 LINK C MSE A 529 N PRO A 530 1555 1555 1.35 LINK C GLU A 549 N MSE A 550 1555 1555 1.34 LINK C MSE A 550 N LEU A 551 1555 1555 1.33 LINK C ASN A 560 N MSE A 561 1555 1555 1.33 LINK C MSE A 561 N AARG A 562 1555 1555 1.33 LINK C MSE A 561 N BARG A 562 1555 1555 1.33 LINK C LYS A 624 N MSE A 625 1555 1555 1.35 LINK C MSE A 625 N ASP A 626 1555 1555 1.34 LINK C THR A 636 N MSE A 637 1555 1555 1.34 LINK C MSE A 637 N ALA A 638 1555 1555 1.34 LINK C LYS A 644 N AMSE A 645 1555 1555 1.34 LINK C LYS A 644 N BMSE A 645 1555 1555 1.35 LINK C AMSE A 645 N ASP A 646 1555 1555 1.33 LINK C BMSE A 645 N ASP A 646 1555 1555 1.35 SITE 1 AC1 4 TYR A 375 ARG A 379 SER A 632 TYR A 634 CRYST1 56.356 73.400 138.179 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017744 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013624 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007237 0.00000