HEADER TRANSCRIPTION/DNA 23-JUN-16 5KL2 TITLE WILMS TUMOR PROTEIN (WT1) ZNF2-4 IN COMPLEX WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: WILMS TUMOR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 333-420; COMPND 5 SYNONYM: WT33; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*AP*GP*T)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(*TP*AP*CP*TP*CP*CP*CP*AP*CP*GP*C)-3'); COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PGEX6P-1; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PXC1295; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS WILMS TUMOR PROTEIN, WT1, ZINC FINGER, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.HASHIMOTO,X.CHENG REVDAT 6 27-SEP-23 5KL2 1 LINK REVDAT 5 25-DEC-19 5KL2 1 REMARK REVDAT 4 27-SEP-17 5KL2 1 REMARK REVDAT 3 14-DEC-16 5KL2 1 JRNL REVDAT 2 21-SEP-16 5KL2 1 JRNL REVDAT 1 14-SEP-16 5KL2 0 JRNL AUTH H.HASHIMOTO,X.ZHANG,Y.ZHENG,G.G.WILSON,X.CHENG JRNL TITL DENYS-DRASH SYNDROME ASSOCIATED WT1 GLUTAMINE 369 MUTANTS JRNL TITL 2 HAVE ALTERED SEQUENCE-PREFERENCES AND ALTERED RESPONSES TO JRNL TITL 3 EPIGENETIC MODIFICATIONS. JRNL REF NUCLEIC ACIDS RES. V. 44 10165 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 27596598 JRNL DOI 10.1093/NAR/GKW766 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2439: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 17401 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 870 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.1192 - 3.0739 0.99 2849 155 0.1417 0.1638 REMARK 3 2 3.0739 - 2.4402 1.00 2837 155 0.1674 0.2261 REMARK 3 3 2.4402 - 2.1319 1.00 2835 150 0.1676 0.1898 REMARK 3 4 2.1319 - 1.9370 1.00 2821 146 0.1814 0.2108 REMARK 3 5 1.9370 - 1.7982 0.98 2766 146 0.2088 0.2071 REMARK 3 6 1.7982 - 1.6922 0.85 2423 118 0.2418 0.2610 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 1332 REMARK 3 ANGLE : 1.194 1857 REMARK 3 CHIRALITY : 0.065 191 REMARK 3 PLANARITY : 0.009 162 REMARK 3 DIHEDRAL : 19.162 725 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 350 THROUGH 354 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.7960-265.3812 -66.6261 REMARK 3 T TENSOR REMARK 3 T11: 0.3205 T22: 0.4324 REMARK 3 T33: 0.4040 T12: 0.0687 REMARK 3 T13: -0.0181 T23: -0.0967 REMARK 3 L TENSOR REMARK 3 L11: 2.1301 L22: 6.0262 REMARK 3 L33: 4.9956 L12: 3.5816 REMARK 3 L13: -3.0817 L23: -5.2278 REMARK 3 S TENSOR REMARK 3 S11: -0.0947 S12: 0.1111 S13: -1.3685 REMARK 3 S21: -0.0618 S22: 0.3067 S23: -1.1759 REMARK 3 S31: 0.9077 S32: 1.3454 S33: -0.0590 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 355 THROUGH 366 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.6893-259.1630 -60.9608 REMARK 3 T TENSOR REMARK 3 T11: 0.1797 T22: 0.3181 REMARK 3 T33: 0.2323 T12: 0.0233 REMARK 3 T13: 0.0068 T23: -0.0443 REMARK 3 L TENSOR REMARK 3 L11: 2.4894 L22: 8.4116 REMARK 3 L33: 6.1358 L12: 4.5287 REMARK 3 L13: 2.6523 L23: 4.0722 REMARK 3 S TENSOR REMARK 3 S11: 0.1126 S12: 0.4176 S13: -0.5508 REMARK 3 S21: 0.1122 S22: 0.2444 S23: -0.6370 REMARK 3 S31: 0.0277 S32: 0.8079 S33: -0.4093 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 367 THROUGH 394 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.3169-251.6253 -58.2042 REMARK 3 T TENSOR REMARK 3 T11: 0.1599 T22: 0.1416 REMARK 3 T33: 0.1855 T12: -0.0072 REMARK 3 T13: -0.0214 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 6.7793 L22: 2.6078 REMARK 3 L33: 3.5692 L12: -1.3206 REMARK 3 L13: -3.0336 L23: 1.1294 REMARK 3 S TENSOR REMARK 3 S11: 0.1074 S12: 0.1846 S13: 0.5101 REMARK 3 S21: -0.1074 S22: 0.0360 S23: 0.0486 REMARK 3 S31: -0.1945 S32: -0.0433 S33: -0.1327 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 395 THROUGH 406 ) REMARK 3 ORIGIN FOR THE GROUP (A): -59.3718-255.8020 -52.5434 REMARK 3 T TENSOR REMARK 3 T11: 0.1441 T22: 0.1781 REMARK 3 T33: 0.1641 T12: 0.0094 REMARK 3 T13: 0.0000 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 3.4139 L22: 4.8000 REMARK 3 L33: 8.1021 L12: -0.0681 REMARK 3 L13: -5.1598 L23: -0.6255 REMARK 3 S TENSOR REMARK 3 S11: 0.0930 S12: 0.0303 S13: 0.1322 REMARK 3 S21: 0.2497 S22: 0.1590 S23: 0.2204 REMARK 3 S31: -0.2140 S32: -0.0516 S33: -0.2240 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 407 THROUGH 411 ) REMARK 3 ORIGIN FOR THE GROUP (A): -65.3826-263.8032 -49.2940 REMARK 3 T TENSOR REMARK 3 T11: 0.1832 T22: 0.2472 REMARK 3 T33: 0.3364 T12: 0.0063 REMARK 3 T13: -0.0214 T23: 0.0636 REMARK 3 L TENSOR REMARK 3 L11: 5.1854 L22: 7.8266 REMARK 3 L33: 4.2031 L12: -5.3328 REMARK 3 L13: -4.5192 L23: 4.8217 REMARK 3 S TENSOR REMARK 3 S11: 0.1357 S12: 0.4363 S13: 0.1364 REMARK 3 S21: -0.4353 S22: -0.2011 S23: 1.3534 REMARK 3 S31: -0.0967 S32: -0.7910 S33: -0.0191 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 412 THROUGH 416 ) REMARK 3 ORIGIN FOR THE GROUP (A): -64.4225-277.4810 -44.9309 REMARK 3 T TENSOR REMARK 3 T11: 0.4207 T22: 0.2585 REMARK 3 T33: 0.3043 T12: -0.0570 REMARK 3 T13: 0.0211 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 2.1302 L22: 4.4863 REMARK 3 L33: 4.5376 L12: -2.2738 REMARK 3 L13: 2.0430 L23: -4.4716 REMARK 3 S TENSOR REMARK 3 S11: 0.2786 S12: -0.2722 S13: -0.6590 REMARK 3 S21: 0.5236 S22: -0.3478 S23: 0.6803 REMARK 3 S31: 0.7722 S32: 0.1622 S33: 0.1806 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 417 THROUGH 424 ) REMARK 3 ORIGIN FOR THE GROUP (A): -64.7243-269.4186 -43.6319 REMARK 3 T TENSOR REMARK 3 T11: 0.3154 T22: 0.2441 REMARK 3 T33: 0.2967 T12: -0.0136 REMARK 3 T13: 0.0409 T23: 0.0462 REMARK 3 L TENSOR REMARK 3 L11: 2.3580 L22: 3.1742 REMARK 3 L33: 4.6993 L12: 2.3362 REMARK 3 L13: -3.2665 L23: -3.6005 REMARK 3 S TENSOR REMARK 3 S11: -0.0793 S12: -0.1832 S13: 0.0392 REMARK 3 S21: 0.5174 S22: 0.2031 S23: 0.4878 REMARK 3 S31: 0.3706 S32: -0.1423 S33: -0.1067 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 425 THROUGH 437 ) REMARK 3 ORIGIN FOR THE GROUP (A): -56.6462-273.3107 -42.8749 REMARK 3 T TENSOR REMARK 3 T11: 0.3350 T22: 0.2486 REMARK 3 T33: 0.2064 T12: 0.0852 REMARK 3 T13: -0.0193 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 5.7197 L22: 2.7302 REMARK 3 L33: 1.3721 L12: 3.2988 REMARK 3 L13: -0.2449 L23: 0.6374 REMARK 3 S TENSOR REMARK 3 S11: -0.1524 S12: -0.3595 S13: -0.2701 REMARK 3 S21: 0.6220 S22: -0.0283 S23: -0.3716 REMARK 3 S31: 0.3994 S32: 0.4571 S33: 0.2317 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.6507-262.8058 -52.7566 REMARK 3 T TENSOR REMARK 3 T11: 0.1385 T22: 0.1943 REMARK 3 T33: 0.1323 T12: 0.0047 REMARK 3 T13: -0.0184 T23: 0.0442 REMARK 3 L TENSOR REMARK 3 L11: 2.1035 L22: 1.9570 REMARK 3 L33: 3.6191 L12: -0.1756 REMARK 3 L13: -0.3748 L23: 0.2537 REMARK 3 S TENSOR REMARK 3 S11: 0.0307 S12: -0.1420 S13: 0.0439 REMARK 3 S21: 0.1188 S22: 0.1821 S23: 0.0082 REMARK 3 S31: 0.0563 S32: -0.2539 S33: -0.1647 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.3791-263.5002 -55.3762 REMARK 3 T TENSOR REMARK 3 T11: 0.1246 T22: 0.1683 REMARK 3 T33: 0.1813 T12: -0.0025 REMARK 3 T13: 0.0249 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 3.5538 L22: 2.6440 REMARK 3 L33: 8.7002 L12: 0.6426 REMARK 3 L13: 1.8402 L23: 0.4877 REMARK 3 S TENSOR REMARK 3 S11: 0.2281 S12: -0.0891 S13: -0.1807 REMARK 3 S21: -0.0289 S22: 0.2022 S23: -0.0757 REMARK 3 S31: 0.0779 S32: -0.0971 S33: -0.3879 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KL2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222093. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17475 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.42400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4R2R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% (W/V) PEG 3350, 20 MM CITRIC ACID, REMARK 280 80 MM BIS-TRIS PROPANE, PH 8.8, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.05350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.54450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.05350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.54450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 345 REMARK 465 PRO A 346 REMARK 465 LEU A 347 REMARK 465 GLY A 348 REMARK 465 SER A 349 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 437 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 361 O HOH A 601 1.97 REMARK 500 O HOH B 116 O HOH B 130 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 635 O HOH A 654 2452 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG B 2 O3' DG B 2 C3' -0.037 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 3 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC C 11 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 417 -7.32 76.96 REMARK 500 GLN A 436 46.51 -89.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 355 SG REMARK 620 2 CYS A 360 SG 116.2 REMARK 620 3 HIS A 373 NE2 110.1 104.8 REMARK 620 4 HIS A 377 NE2 108.1 114.4 102.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 506 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 385 SG REMARK 620 2 CYS A 388 SG 115.3 REMARK 620 3 HIS A 401 NE2 108.1 105.6 REMARK 620 4 HIS A 405 NE2 109.4 112.4 105.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 102 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 395 OG REMARK 620 2 HOH A 637 O 74.8 REMARK 620 3 DC C 3 OP2 126.1 120.0 REMARK 620 4 DC C 3 O5' 104.3 171.0 53.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 507 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 413 SG REMARK 620 2 CYS A 418 SG 113.3 REMARK 620 3 HIS A 431 NE2 108.1 114.5 REMARK 620 4 HIS A 435 NE2 106.5 122.0 89.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KL3 RELATED DB: PDB REMARK 900 RELATED ID: 5KL4 RELATED DB: PDB REMARK 900 RELATED ID: 5KL5 RELATED DB: PDB REMARK 900 RELATED ID: 5KL6 RELATED DB: PDB REMARK 900 RELATED ID: 5KL7 RELATED DB: PDB DBREF 5KL2 A 350 437 UNP P19544 WT1_HUMAN 333 420 DBREF 5KL2 B 1 11 PDB 5KL2 5KL2 1 11 DBREF 5KL2 C 1 11 PDB 5KL2 5KL2 1 11 SEQADV 5KL2 GLY A 345 UNP P19544 EXPRESSION TAG SEQADV 5KL2 PRO A 346 UNP P19544 EXPRESSION TAG SEQADV 5KL2 LEU A 347 UNP P19544 EXPRESSION TAG SEQADV 5KL2 GLY A 348 UNP P19544 EXPRESSION TAG SEQADV 5KL2 SER A 349 UNP P19544 EXPRESSION TAG SEQRES 1 A 93 GLY PRO LEU GLY SER GLU LYS PRO TYR GLN CYS ASP PHE SEQRES 2 A 93 LYS ASP CYS GLU ARG ARG PHE SER ARG SER ASP GLN LEU SEQRES 3 A 93 LYS ARG HIS GLN ARG ARG HIS THR GLY VAL LYS PRO PHE SEQRES 4 A 93 GLN CYS LYS THR CYS GLN ARG LYS PHE SER ARG SER ASP SEQRES 5 A 93 HIS LEU LYS THR HIS THR ARG THR HIS THR GLY GLU LYS SEQRES 6 A 93 PRO PHE SER CYS ARG TRP PRO SER CYS GLN LYS LYS PHE SEQRES 7 A 93 ALA ARG SER ASP GLU LEU VAL ARG HIS HIS ASN MET HIS SEQRES 8 A 93 GLN ARG SEQRES 1 B 11 DA DG DC DG DT DG DG DG DA DG DT SEQRES 1 C 11 DT DA DC DT DC DC DC DA DC DG DC HET EDO A 501 10 HET EDO A 502 10 HET EDO A 503 10 HET EDO A 504 10 HET ZN A 505 1 HET ZN A 506 1 HET ZN A 507 1 HET EDO C 101 10 HET NA C 102 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 4 EDO 5(C2 H6 O2) FORMUL 8 ZN 3(ZN 2+) FORMUL 12 NA NA 1+ FORMUL 13 HOH *107(H2 O) HELIX 1 AA1 ARG A 366 GLY A 379 1 14 HELIX 2 AA2 ARG A 394 GLY A 407 1 14 HELIX 3 AA3 ARG A 424 GLN A 436 1 13 SHEET 1 AA1 2 TYR A 353 GLN A 354 0 SHEET 2 AA1 2 ARG A 363 PHE A 364 -1 O PHE A 364 N TYR A 353 SHEET 1 AA2 2 PHE A 383 GLN A 384 0 SHEET 2 AA2 2 LYS A 391 PHE A 392 -1 O PHE A 392 N PHE A 383 SHEET 1 AA3 2 PHE A 411 SER A 412 0 SHEET 2 AA3 2 LYS A 421 PHE A 422 -1 O PHE A 422 N PHE A 411 LINK SG CYS A 355 ZN ZN A 505 1555 1555 2.26 LINK SG CYS A 360 ZN ZN A 505 1555 1555 2.27 LINK NE2 HIS A 373 ZN ZN A 505 1555 1555 2.09 LINK NE2 HIS A 377 ZN ZN A 505 1555 1555 2.03 LINK SG CYS A 385 ZN ZN A 506 1555 1555 2.30 LINK SG CYS A 388 ZN ZN A 506 1555 1555 2.28 LINK OG SER A 395 NA NA C 102 1555 1555 2.80 LINK NE2 HIS A 401 ZN ZN A 506 1555 1555 2.09 LINK NE2 HIS A 405 ZN ZN A 506 1555 1555 2.09 LINK SG CYS A 413 ZN ZN A 507 1555 1555 2.29 LINK SG CYS A 418 ZN ZN A 507 1555 1555 2.32 LINK NE2 HIS A 431 ZN ZN A 507 1555 1555 2.02 LINK NE2 HIS A 435 ZN ZN A 507 1555 1555 1.97 LINK O HOH A 637 NA NA C 102 1555 1555 2.72 LINK OP2 DC C 3 NA NA C 102 1555 1555 2.06 LINK O5' DC C 3 NA NA C 102 1555 1555 3.10 SITE 1 AC1 6 ASP A 368 GLN A 369 ARG A 372 DA B 9 SITE 2 AC1 6 DA C 2 DC C 3 SITE 1 AC2 6 LYS A 381 PHE A 392 SER A 393 ARG A 394 SITE 2 AC2 6 HIS A 397 DT B 5 SITE 1 AC3 7 ASP A 426 GLU A 427 ARG A 430 DC B 3 SITE 2 AC3 7 DA C 8 DC C 9 DG C 10 SITE 1 AC4 3 PRO A 410 SER A 412 ARG A 414 SITE 1 AC5 4 CYS A 355 CYS A 360 HIS A 373 HIS A 377 SITE 1 AC6 4 CYS A 385 CYS A 388 HIS A 401 HIS A 405 SITE 1 AC7 4 CYS A 413 CYS A 418 HIS A 431 HIS A 435 SITE 1 AC8 1 HOH C 206 SITE 1 AC9 3 SER A 395 HOH A 637 DC C 3 CRYST1 70.107 65.089 35.702 90.00 93.42 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014264 0.000000 0.000853 0.00000 SCALE2 0.000000 0.015364 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028060 0.00000