HEADER RNA-BINDING PROTEIN/RNA 23-JUN-16 5KL8 TITLE CRYSTAL STRUCTURE OF THE PUMILIO-NOS-CYCLINB RNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATERNAL PROTEIN PUMILIO; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1091-1426; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN NANOS; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 289-401; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: RNA (5'-R(*UP*AP*UP*UP*UP*GP*UP*AP*AP*UP*U)-3'); COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: PUM, CG9755; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 10 ORGANISM_COMMON: FRUIT FLY; SOURCE 11 ORGANISM_TAXID: 7227; SOURCE 12 GENE: NOS, CG5637; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 18 ORGANISM_TAXID: 7227 KEYWDS RNA-BINDING PROTEINS, RNA-BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.QIU,T.M.T.HALL REVDAT 3 06-MAR-24 5KL8 1 REMARK REVDAT 2 24-AUG-16 5KL8 1 JRNL REVDAT 1 17-AUG-16 5KL8 0 JRNL AUTH C.A.WEIDMANN,C.QIU,R.M.ARVOLA,T.F.LOU,J.KILLINGSWORTH, JRNL AUTH 2 Z.T.CAMPBELL,T.M.TANAKA HALL,A.C.GOLDSTROHM JRNL TITL DROSOPHILA NANOS ACTS AS A MOLECULAR CLAMP THAT MODULATES JRNL TITL 2 THE RNA-BINDING AND REPRESSION ACTIVITIES OF PUMILIO. JRNL REF ELIFE V. 5 2016 JRNL REFN ESSN 2050-084X JRNL PMID 27482653 JRNL DOI 10.7554/ELIFE.17096 REMARK 2 REMARK 2 RESOLUTION. 4.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 10715 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.286 REMARK 3 R VALUE (WORKING SET) : 0.283 REMARK 3 FREE R VALUE : 0.312 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1073 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0024 - 7.9347 0.97 1289 145 0.2247 0.2615 REMARK 3 2 7.9347 - 6.3067 1.00 1231 137 0.3048 0.3561 REMARK 3 3 6.3067 - 5.5120 1.00 1218 135 0.3187 0.3314 REMARK 3 4 5.5120 - 5.0091 1.00 1190 132 0.3159 0.3416 REMARK 3 5 5.0091 - 4.6507 1.00 1193 133 0.3223 0.3491 REMARK 3 6 4.6507 - 4.3769 1.00 1181 131 0.3455 0.3372 REMARK 3 7 4.3769 - 4.1580 1.00 1177 130 0.3586 0.3950 REMARK 3 8 4.1580 - 3.9772 1.00 1163 130 0.3734 0.3663 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.530 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 182.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 206.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3323 REMARK 3 ANGLE : 0.508 4530 REMARK 3 CHIRALITY : 0.038 520 REMARK 3 PLANARITY : 0.003 549 REMARK 3 DIHEDRAL : 11.644 2011 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KL8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222344. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.992 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10740 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 0.77900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.9 M AMMONIUM SULFATE, 0.1 M MES, PH REMARK 280 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 146.93467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.46733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.20100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.73367 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 183.66833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 146.93467 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 73.46733 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 36.73367 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 110.20100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 183.66833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1090 REMARK 465 GLY A 1091 REMARK 465 ARG A 1103 REMARK 465 TYR A 1104 REMARK 465 PRO A 1105 REMARK 465 ASN A 1106 REMARK 465 LEU A 1107 REMARK 465 GLN A 1108 REMARK 465 LEU A 1109 REMARK 465 ARG A 1110 REMARK 465 ASP A 1111 REMARK 465 LEU A 1112 REMARK 465 ALA A 1113 REMARK 465 ASN A 1114 REMARK 465 HIS A 1115 REMARK 465 ILE A 1116 REMARK 465 VAL A 1117 REMARK 465 GLU A 1118 REMARK 465 PHE A 1119 REMARK 465 SER A 1120 REMARK 465 HIS A 1419 REMARK 465 ILE A 1420 REMARK 465 ASN A 1421 REMARK 465 ALA A 1422 REMARK 465 LYS A 1423 REMARK 465 LEU A 1424 REMARK 465 GLU A 1425 REMARK 465 LYS A 1426 REMARK 465 SER B 288 REMARK 465 ARG B 289 REMARK 465 GLY B 290 REMARK 465 ALA B 291 REMARK 465 SER B 292 REMARK 465 ASN B 293 REMARK 465 SER B 294 REMARK 465 SER B 295 REMARK 465 ASN B 296 REMARK 465 ASN B 297 REMARK 465 ASN B 298 REMARK 465 ASN B 299 REMARK 465 ASN B 300 REMARK 465 ASN B 301 REMARK 465 ASN B 302 REMARK 465 LYS B 303 REMARK 465 VAL B 304 REMARK 465 TYR B 305 REMARK 465 LYS B 306 REMARK 465 ARG B 307 REMARK 465 TYR B 308 REMARK 465 ASN B 309 REMARK 465 SER B 310 REMARK 465 LYS B 311 REMARK 465 ALA B 312 REMARK 465 LYS B 313 REMARK 465 GLU B 314 REMARK 465 ILE B 315 REMARK 465 GLU B 385 REMARK 465 SER B 386 REMARK 465 PHE B 387 REMARK 465 ARG B 388 REMARK 465 LEU B 389 REMARK 465 ALA B 390 REMARK 465 LYS B 391 REMARK 465 SER B 392 REMARK 465 SER B 393 REMARK 465 TYR B 394 REMARK 465 TYR B 395 REMARK 465 LYS B 396 REMARK 465 GLN B 397 REMARK 465 GLN B 398 REMARK 465 MET B 399 REMARK 465 LYS B 400 REMARK 465 VAL B 401 REMARK 465 VAL B 402 REMARK 465 U C 12 REMARK 465 A C 13 REMARK 465 U C 14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A1135 -153.98 -112.54 REMARK 500 ALA A1136 -172.51 61.86 REMARK 500 ALA A1150 -75.98 -55.06 REMARK 500 PHE A1169 14.49 -62.67 REMARK 500 GLU A1170 -49.57 -136.31 REMARK 500 GLN A1183 23.46 -79.62 REMARK 500 HIS A1187 33.95 -148.90 REMARK 500 CYS A1227 -60.19 -90.00 REMARK 500 LYS A1229 30.19 -78.56 REMARK 500 HIS A1295 34.19 -99.31 REMARK 500 HIS A1315 -47.14 -147.36 REMARK 500 VAL A1328 -31.31 -137.62 REMARK 500 ARG A1329 92.37 -53.83 REMARK 500 GLU A1346 -71.58 -52.69 REMARK 500 LYS A1347 6.01 -67.55 REMARK 500 ASP A1369 -66.12 51.62 REMARK 500 ASP A1390 38.45 -96.30 REMARK 500 VAL A1391 -23.83 -140.04 REMARK 500 ALA A1409 21.54 -65.02 REMARK 500 TYR A1414 -154.92 -79.84 REMARK 500 ILE B 356 -80.08 -91.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 319 SG REMARK 620 2 CYS B 322 SG 118.0 REMARK 620 3 HIS B 335 NE2 109.2 96.0 REMARK 620 4 CYS B 346 SG 122.0 101.8 106.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 354 SG REMARK 620 2 CYS B 357 SG 117.1 REMARK 620 3 HIS B 365 NE2 107.3 83.3 REMARK 620 4 CYS B 370 SG 113.3 118.4 113.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KL1 RELATED DB: PDB REMARK 900 RELATED ID: 5KLA RELATED DB: PDB DBREF 5KL8 A 1091 1426 UNP P25822 PUM_DROME 1091 1426 DBREF 5KL8 B 289 401 UNP P25724 NANOS_DROME 289 401 DBREF 5KL8 C 1 14 PDB 5KL8 5KL8 1 14 SEQADV 5KL8 SER A 1090 UNP P25822 EXPRESSION TAG SEQADV 5KL8 SER B 288 UNP P25724 EXPRESSION TAG SEQADV 5KL8 VAL B 402 UNP P25724 EXPRESSION TAG SEQRES 1 A 337 SER GLY ARG SER ARG LEU LEU GLU ASP PHE ARG ASN GLN SEQRES 2 A 337 ARG TYR PRO ASN LEU GLN LEU ARG ASP LEU ALA ASN HIS SEQRES 3 A 337 ILE VAL GLU PHE SER GLN ASP GLN HIS GLY SER ARG PHE SEQRES 4 A 337 ILE GLN GLN LYS LEU GLU ARG ALA THR ALA ALA GLU LYS SEQRES 5 A 337 GLN MET VAL PHE SER GLU ILE LEU ALA ALA ALA TYR SER SEQRES 6 A 337 LEU MET THR ASP VAL PHE GLY ASN TYR VAL ILE GLN LYS SEQRES 7 A 337 PHE PHE GLU PHE GLY THR PRO GLU GLN LYS ASN THR LEU SEQRES 8 A 337 GLY MET GLN VAL LYS GLY HIS VAL LEU GLN LEU ALA LEU SEQRES 9 A 337 GLN MET TYR GLY CYS ARG VAL ILE GLN LYS ALA LEU GLU SEQRES 10 A 337 SER ILE SER PRO GLU GLN GLN GLN GLU ILE VAL HIS GLU SEQRES 11 A 337 LEU ASP GLY HIS VAL LEU LYS CYS VAL LYS ASP GLN ASN SEQRES 12 A 337 GLY ASN HIS VAL VAL GLN LYS CYS ILE GLU CYS VAL ASP SEQRES 13 A 337 PRO VAL ALA LEU GLN PHE ILE ILE ASN ALA PHE LYS GLY SEQRES 14 A 337 GLN VAL TYR SER LEU SER THR HIS PRO TYR GLY CYS ARG SEQRES 15 A 337 VAL ILE GLN ARG ILE LEU GLU HIS CYS THR ALA GLU GLN SEQRES 16 A 337 THR THR PRO ILE LEU ASP GLU LEU HIS GLU HIS THR GLU SEQRES 17 A 337 GLN LEU ILE GLN ASP GLN TYR GLY ASN TYR VAL ILE GLN SEQRES 18 A 337 HIS VAL LEU GLU HIS GLY LYS GLN GLU ASP LYS SER ILE SEQRES 19 A 337 LEU ILE ASN SER VAL ARG GLY LYS VAL LEU VAL LEU SER SEQRES 20 A 337 GLN HIS LYS PHE ALA SER ASN VAL VAL GLU LYS CYS VAL SEQRES 21 A 337 THR HIS ALA THR ARG GLY GLU ARG THR GLY LEU ILE ASP SEQRES 22 A 337 GLU VAL CYS THR PHE ASN ASP ASN ALA LEU HIS VAL MET SEQRES 23 A 337 MET LYS ASP GLN TYR ALA ASN TYR VAL VAL GLN LYS MET SEQRES 24 A 337 ILE ASP VAL SER GLU PRO THR GLN LEU LYS LYS LEU MET SEQRES 25 A 337 THR LYS ILE ARG PRO HIS MET ALA ALA LEU ARG LYS TYR SEQRES 26 A 337 THR TYR GLY LYS HIS ILE ASN ALA LYS LEU GLU LYS SEQRES 1 B 115 SER ARG GLY ALA SER ASN SER SER ASN ASN ASN ASN ASN SEQRES 2 B 115 ASN ASN LYS VAL TYR LYS ARG TYR ASN SER LYS ALA LYS SEQRES 3 B 115 GLU ILE SER ARG HIS CYS VAL PHE CYS GLU ASN ASN ASN SEQRES 4 B 115 GLU PRO GLU ALA VAL ILE ASN SER HIS SER VAL ARG ASP SEQRES 5 B 115 ASN PHE ASN ARG VAL LEU CYS PRO LYS LEU ARG THR TYR SEQRES 6 B 115 VAL CYS PRO ILE CYS GLY ALA SER GLY ASP SER ALA HIS SEQRES 7 B 115 THR ILE LYS TYR CYS PRO LYS LYS PRO ILE ILE THR MET SEQRES 8 B 115 GLU ASP ALA ILE LYS ALA GLU SER PHE ARG LEU ALA LYS SEQRES 9 B 115 SER SER TYR TYR LYS GLN GLN MET LYS VAL VAL SEQRES 1 C 14 U A U U U G U A A U U U A SEQRES 2 C 14 U HET ZN B 601 1 HET ZN B 602 1 HETNAM ZN ZINC ION FORMUL 4 ZN 2(ZN 2+) HELIX 1 AA1 ARG A 1092 ARG A 1100 1 9 HELIX 2 AA2 ASP A 1122 LEU A 1133 1 12 HELIX 3 AA3 THR A 1137 LEU A 1149 1 13 HELIX 4 AA4 ALA A 1151 THR A 1157 1 7 HELIX 5 AA5 PHE A 1160 GLY A 1172 1 13 HELIX 6 AA6 THR A 1173 GLN A 1183 1 11 HELIX 7 AA7 HIS A 1187 ALA A 1192 1 6 HELIX 8 AA8 GLN A 1194 LYS A 1203 1 10 HELIX 9 AA9 SER A 1209 LEU A 1220 1 12 HELIX 10 AB1 HIS A 1223 LYS A 1229 1 7 HELIX 11 AB2 ASN A 1232 VAL A 1244 1 13 HELIX 12 AB3 ASP A 1245 ALA A 1248 5 4 HELIX 13 AB4 LEU A 1249 ALA A 1255 1 7 HELIX 14 AB5 GLN A 1259 THR A 1265 1 7 HELIX 15 AB6 HIS A 1266 HIS A 1279 1 14 HELIX 16 AB7 THR A 1281 HIS A 1295 1 15 HELIX 17 AB8 HIS A 1295 ASP A 1302 1 8 HELIX 18 AB9 TYR A 1304 GLU A 1314 1 11 HELIX 19 AC1 LYS A 1317 SER A 1327 1 11 HELIX 20 AC2 LYS A 1331 GLN A 1337 1 7 HELIX 21 AC3 PHE A 1340 THR A 1350 1 11 HELIX 22 AC4 THR A 1353 THR A 1366 1 14 HELIX 23 AC5 ASP A 1369 ASP A 1378 1 10 HELIX 24 AC6 TYR A 1380 ASP A 1390 1 11 HELIX 25 AC7 GLU A 1393 THR A 1402 1 10 HELIX 26 AC8 ILE A 1404 ALA A 1409 1 6 HELIX 27 AC9 VAL B 320 ASN B 325 1 6 HELIX 28 AD1 PRO B 328 HIS B 335 1 8 HELIX 29 AD2 CYS B 346 TYR B 352 1 7 HELIX 30 AD3 SER B 360 ALA B 364 5 5 HELIX 31 AD4 THR B 377 ALA B 384 1 8 LINK SG CYS B 319 ZN ZN B 601 1555 1555 2.68 LINK SG CYS B 322 ZN ZN B 601 1555 1555 2.35 LINK NE2 HIS B 335 ZN ZN B 601 1555 1555 2.15 LINK SG CYS B 346 ZN ZN B 601 1555 1555 2.26 LINK SG CYS B 354 ZN ZN B 602 1555 1555 2.21 LINK SG CYS B 357 ZN ZN B 602 1555 1555 2.40 LINK NE2 HIS B 365 ZN ZN B 602 1555 1555 2.15 LINK SG CYS B 370 ZN ZN B 602 1555 1555 2.29 SITE 1 AC1 4 CYS B 319 CYS B 322 HIS B 335 CYS B 346 SITE 1 AC2 4 CYS B 354 CYS B 357 HIS B 365 CYS B 370 CRYST1 135.102 135.102 220.402 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007402 0.004273 0.000000 0.00000 SCALE2 0.000000 0.008547 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004537 0.00000