HEADER RNA-BINDING PROTEIN/RNA 23-JUN-16 5KLA TITLE CRYSTAL STRUCTURE OF THE DROSOPHILA PUMILIO RNA-BINDING DOMAIN IN TITLE 2 COMPLEX WITH HUNCHBACK RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATERNAL PROTEIN PUMILIO; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1091-1426; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'-R(*UP*GP*UP*AP*CP*AP*UP*A)-3'); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: PUM, CG9755; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 11 ORGANISM_TAXID: 7227 KEYWDS RNA-BINDING PROTEIN, RNA-BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.QIU,T.M.T.HALL REVDAT 3 27-SEP-23 5KLA 1 REMARK REVDAT 2 24-AUG-16 5KLA 1 JRNL REVDAT 1 17-AUG-16 5KLA 0 JRNL AUTH C.A.WEIDMANN,C.QIU,R.M.ARVOLA,T.F.LOU,J.KILLINGSWORTH, JRNL AUTH 2 Z.T.CAMPBELL,T.M.TANAKA HALL,A.C.GOLDSTROHM JRNL TITL DROSOPHILA NANOS ACTS AS A MOLECULAR CLAMP THAT MODULATES JRNL TITL 2 THE RNA-BINDING AND REPRESSION ACTIVITIES OF PUMILIO. JRNL REF ELIFE V. 5 2016 JRNL REFN ESSN 2050-084X JRNL PMID 27482653 JRNL DOI 10.7554/ELIFE.17096 REMARK 2 REMARK 2 RESOLUTION. 1.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 127062 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 12698 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.4734 - 3.5368 1.00 4050 449 0.1455 0.1590 REMARK 3 2 3.5368 - 2.8077 1.00 3932 438 0.1590 0.1759 REMARK 3 3 2.8077 - 2.4529 1.00 3840 430 0.1558 0.1746 REMARK 3 4 2.4529 - 2.2286 0.99 3879 430 0.1545 0.1627 REMARK 3 5 2.2286 - 2.0689 0.99 3830 422 0.1565 0.1677 REMARK 3 6 2.0689 - 1.9470 0.99 3825 426 0.1568 0.1613 REMARK 3 7 1.9470 - 1.8495 1.00 3840 426 0.1637 0.1771 REMARK 3 8 1.8495 - 1.7690 0.99 3850 425 0.1583 0.1874 REMARK 3 9 1.7690 - 1.7009 1.00 3825 421 0.1609 0.1753 REMARK 3 10 1.7009 - 1.6422 1.00 3775 420 0.1551 0.1625 REMARK 3 11 1.6422 - 1.5908 1.00 3859 430 0.1570 0.1643 REMARK 3 12 1.5908 - 1.5453 1.00 3791 422 0.1547 0.1734 REMARK 3 13 1.5453 - 1.5047 1.00 3852 429 0.1627 0.1762 REMARK 3 14 1.5047 - 1.4680 1.00 3781 421 0.1655 0.1811 REMARK 3 15 1.4680 - 1.4346 1.00 3829 427 0.1716 0.1852 REMARK 3 16 1.4346 - 1.4041 1.00 3734 415 0.1777 0.1930 REMARK 3 17 1.4041 - 1.3760 1.00 3859 428 0.1815 0.2047 REMARK 3 18 1.3760 - 1.3500 1.00 3771 418 0.1870 0.2050 REMARK 3 19 1.3500 - 1.3259 1.00 3819 425 0.1870 0.2094 REMARK 3 20 1.3259 - 1.3034 1.00 3808 423 0.1927 0.2108 REMARK 3 21 1.3034 - 1.2824 1.00 3750 415 0.1940 0.2117 REMARK 3 22 1.2824 - 1.2627 1.00 3826 426 0.1950 0.2028 REMARK 3 23 1.2627 - 1.2441 1.00 3781 420 0.1987 0.2147 REMARK 3 24 1.2441 - 1.2266 1.00 3766 419 0.1993 0.2119 REMARK 3 25 1.2266 - 1.2100 0.99 3838 427 0.2029 0.2157 REMARK 3 26 1.2100 - 1.1943 1.00 3776 418 0.2138 0.2189 REMARK 3 27 1.1943 - 1.1793 1.00 3763 419 0.2224 0.2342 REMARK 3 28 1.1793 - 1.1651 1.00 3802 424 0.2242 0.2228 REMARK 3 29 1.1651 - 1.1516 1.00 3754 417 0.2378 0.2393 REMARK 3 30 1.1516 - 1.1386 0.93 3559 388 0.2565 0.2691 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3029 REMARK 3 ANGLE : 0.950 4125 REMARK 3 CHIRALITY : 0.068 467 REMARK 3 PLANARITY : 0.006 511 REMARK 3 DIHEDRAL : 21.031 1180 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1090 THROUGH 1137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -56.6292 -0.7804 -16.3377 REMARK 3 T TENSOR REMARK 3 T11: 0.1586 T22: 0.2099 REMARK 3 T33: 0.1892 T12: -0.0092 REMARK 3 T13: -0.0104 T23: 0.0304 REMARK 3 L TENSOR REMARK 3 L11: 2.1748 L22: 1.7709 REMARK 3 L33: 1.2576 L12: 0.5989 REMARK 3 L13: 0.1420 L23: -0.3919 REMARK 3 S TENSOR REMARK 3 S11: -0.0441 S12: 0.0812 S13: -0.0676 REMARK 3 S21: 0.0521 S22: -0.0715 S23: -0.0552 REMARK 3 S31: -0.0040 S32: 0.2294 S33: 0.1027 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1138 THROUGH 1232 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.9523 4.3594 -14.9912 REMARK 3 T TENSOR REMARK 3 T11: 0.1768 T22: 0.4532 REMARK 3 T33: 0.1607 T12: -0.0462 REMARK 3 T13: 0.0019 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 1.2669 L22: 0.5587 REMARK 3 L33: 1.0255 L12: 0.9623 REMARK 3 L13: 0.2857 L23: -0.2295 REMARK 3 S TENSOR REMARK 3 S11: -0.2402 S12: 0.8555 S13: 0.0417 REMARK 3 S21: -0.1798 S22: 0.2160 S23: -0.0639 REMARK 3 S31: -0.0254 S32: 0.2985 S33: -0.0122 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1233 THROUGH 1315 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8471 2.7144 3.9217 REMARK 3 T TENSOR REMARK 3 T11: 0.1520 T22: 0.2292 REMARK 3 T33: 0.1524 T12: -0.0072 REMARK 3 T13: 0.0045 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.5067 L22: 0.5657 REMARK 3 L33: 1.5513 L12: -0.0947 REMARK 3 L13: 0.5640 L23: -0.2472 REMARK 3 S TENSOR REMARK 3 S11: -0.0221 S12: 0.3746 S13: 0.0494 REMARK 3 S21: -0.0515 S22: -0.0117 S23: -0.0600 REMARK 3 S31: 0.0045 S32: 0.3179 S33: 0.0198 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1316 THROUGH 1426 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7565 -10.4917 28.6338 REMARK 3 T TENSOR REMARK 3 T11: 0.1479 T22: 0.1152 REMARK 3 T33: 0.1486 T12: 0.0031 REMARK 3 T13: -0.0070 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.8682 L22: 1.0207 REMARK 3 L33: 0.9302 L12: -0.4925 REMARK 3 L13: 0.0270 L23: 0.1904 REMARK 3 S TENSOR REMARK 3 S11: -0.0173 S12: -0.1603 S13: -0.1694 REMARK 3 S21: 0.1232 S22: 0.0227 S23: 0.0274 REMARK 3 S31: 0.0495 S32: 0.0429 S33: 0.0004 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.6178 -0.8494 10.3179 REMARK 3 T TENSOR REMARK 3 T11: 0.1641 T22: 0.2354 REMARK 3 T33: 0.1690 T12: -0.0161 REMARK 3 T13: -0.0081 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 0.0720 L22: 0.1525 REMARK 3 L33: 0.9781 L12: -0.0547 REMARK 3 L13: -0.2191 L23: -0.3875 REMARK 3 S TENSOR REMARK 3 S11: -0.0368 S12: 0.1327 S13: -0.0308 REMARK 3 S21: -0.0371 S22: 0.1790 S23: 0.0910 REMARK 3 S31: -0.0360 S32: -0.5160 S33: -0.1119 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KLA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222345. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 127177 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.140 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.38700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3H3D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (W/V) PEG 3350, 0.1 M BIS-TRIS, PH REMARK 280 6.5 AND 0.2 M NH4OAC, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 97.45200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 14.76850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 97.45200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 14.76850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1612 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1856 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET A 1408 HD21 ASN A 1421 1.55 REMARK 500 HZ3 LYS A 1331 O HOH A 1605 1.58 REMARK 500 OE1 GLN A 1318 O HOH A 1601 2.01 REMARK 500 ND2 ASN A 1368 O HOH A 1602 2.05 REMARK 500 O HOH A 1831 O HOH A 1870 2.09 REMARK 500 O HOH A 1602 O HOH A 1704 2.13 REMARK 500 OE2 GLU A 1140 O HOH A 1603 2.13 REMARK 500 OE2 GLU A 1206 NZ LYS A 1239 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HG1 THR A 1353 O HOH A 1602 2556 1.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A1135 -10.60 82.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 1503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 1504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 1505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KL1 RELATED DB: PDB REMARK 900 RELATED ID: 5KL8 RELATED DB: PDB DBREF 5KLA A 1091 1426 UNP P25822 PUM_DROME 1091 1426 DBREF 5KLA B 1 8 PDB 5KLA 5KLA 1 8 SEQADV 5KLA SER A 1090 UNP P25822 EXPRESSION TAG SEQRES 1 A 337 SER GLY ARG SER ARG LEU LEU GLU ASP PHE ARG ASN GLN SEQRES 2 A 337 ARG TYR PRO ASN LEU GLN LEU ARG ASP LEU ALA ASN HIS SEQRES 3 A 337 ILE VAL GLU PHE SER GLN ASP GLN HIS GLY SER ARG PHE SEQRES 4 A 337 ILE GLN GLN LYS LEU GLU ARG ALA THR ALA ALA GLU LYS SEQRES 5 A 337 GLN MET VAL PHE SER GLU ILE LEU ALA ALA ALA TYR SER SEQRES 6 A 337 LEU MET THR ASP VAL PHE GLY ASN TYR VAL ILE GLN LYS SEQRES 7 A 337 PHE PHE GLU PHE GLY THR PRO GLU GLN LYS ASN THR LEU SEQRES 8 A 337 GLY MET GLN VAL LYS GLY HIS VAL LEU GLN LEU ALA LEU SEQRES 9 A 337 GLN MET TYR GLY CYS ARG VAL ILE GLN LYS ALA LEU GLU SEQRES 10 A 337 SER ILE SER PRO GLU GLN GLN GLN GLU ILE VAL HIS GLU SEQRES 11 A 337 LEU ASP GLY HIS VAL LEU LYS CYS VAL LYS ASP GLN ASN SEQRES 12 A 337 GLY ASN HIS VAL VAL GLN LYS CYS ILE GLU CYS VAL ASP SEQRES 13 A 337 PRO VAL ALA LEU GLN PHE ILE ILE ASN ALA PHE LYS GLY SEQRES 14 A 337 GLN VAL TYR SER LEU SER THR HIS PRO TYR GLY CYS ARG SEQRES 15 A 337 VAL ILE GLN ARG ILE LEU GLU HIS CYS THR ALA GLU GLN SEQRES 16 A 337 THR THR PRO ILE LEU ASP GLU LEU HIS GLU HIS THR GLU SEQRES 17 A 337 GLN LEU ILE GLN ASP GLN TYR GLY ASN TYR VAL ILE GLN SEQRES 18 A 337 HIS VAL LEU GLU HIS GLY LYS GLN GLU ASP LYS SER ILE SEQRES 19 A 337 LEU ILE ASN SER VAL ARG GLY LYS VAL LEU VAL LEU SER SEQRES 20 A 337 GLN HIS LYS PHE ALA SER ASN VAL VAL GLU LYS CYS VAL SEQRES 21 A 337 THR HIS ALA THR ARG GLY GLU ARG THR GLY LEU ILE ASP SEQRES 22 A 337 GLU VAL CYS THR PHE ASN ASP ASN ALA LEU HIS VAL MET SEQRES 23 A 337 MET LYS ASP GLN TYR ALA ASN TYR VAL VAL GLN LYS MET SEQRES 24 A 337 ILE ASP VAL SER GLU PRO THR GLN LEU LYS LYS LEU MET SEQRES 25 A 337 THR LYS ILE ARG PRO HIS MET ALA ALA LEU ARG LYS TYR SEQRES 26 A 337 THR TYR GLY LYS HIS ILE ASN ALA LYS LEU GLU LYS SEQRES 1 B 8 U G U A C A U A HET EDO A1501 10 HET EDO A1502 10 HET ACT A1503 7 HET ACT A1504 7 HET ACT A1505 7 HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 ACT 3(C2 H3 O2 1-) FORMUL 8 HOH *360(H2 O) HELIX 1 AA1 SER A 1093 ASN A 1101 1 9 HELIX 2 AA2 GLN A 1108 ALA A 1113 5 6 HELIX 3 AA3 HIS A 1115 GLN A 1121 1 7 HELIX 4 AA4 ASP A 1122 GLU A 1134 1 13 HELIX 5 AA5 THR A 1137 ALA A 1151 1 15 HELIX 6 AA6 ALA A 1151 THR A 1157 1 7 HELIX 7 AA7 GLY A 1161 GLY A 1172 1 12 HELIX 8 AA8 THR A 1173 LYS A 1185 1 13 HELIX 9 AA9 HIS A 1187 LEU A 1193 1 7 HELIX 10 AB1 TYR A 1196 ILE A 1208 1 13 HELIX 11 AB2 SER A 1209 GLU A 1219 1 11 HELIX 12 AB3 HIS A 1223 LYS A 1229 1 7 HELIX 13 AB4 ASN A 1232 VAL A 1244 1 13 HELIX 14 AB5 ASP A 1245 ALA A 1248 5 4 HELIX 15 AB6 LEU A 1249 LYS A 1257 1 9 HELIX 16 AB7 GLN A 1259 THR A 1265 1 7 HELIX 17 AB8 TYR A 1268 CYS A 1280 1 13 HELIX 18 AB9 THR A 1281 HIS A 1293 1 13 HELIX 19 AC1 HIS A 1295 GLN A 1301 1 7 HELIX 20 AC2 TYR A 1304 GLY A 1316 1 13 HELIX 21 AC3 LYS A 1317 SER A 1327 1 11 HELIX 22 AC4 LYS A 1331 GLN A 1337 1 7 HELIX 23 AC5 PHE A 1340 ALA A 1352 1 13 HELIX 24 AC6 THR A 1353 THR A 1366 1 14 HELIX 25 AC7 ASN A 1370 ASP A 1378 1 9 HELIX 26 AC8 TYR A 1380 SER A 1392 1 13 HELIX 27 AC9 GLU A 1393 ARG A 1405 1 13 HELIX 28 AD1 HIS A 1407 ARG A 1412 1 6 HELIX 29 AD2 GLY A 1417 LYS A 1426 1 10 SITE 1 AC1 6 GLY A1222 HIS A1223 VAL A1224 LEU A1225 SITE 2 AC1 6 HOH A1653 HOH A1779 SITE 1 AC2 7 GLY A1091 ASN A1106 HOH A1610 HOH A1628 SITE 2 AC2 7 HOH A1685 U B 3 A B 4 SITE 1 AC3 3 ARG A1354 THR A1358 LYS A1399 SITE 1 AC4 3 ARG A1199 A B 6 U B 7 SITE 1 AC5 2 HOH A1749 HOH A1765 CRYST1 194.904 29.537 62.034 90.00 101.25 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005131 0.000000 0.001021 0.00000 SCALE2 0.000000 0.033856 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016436 0.00000