data_5KM7 # _entry.id 5KM7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5KM7 WWPDB D_1000200528 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2017-10-18 _pdbx_database_PDB_obs_spr.pdb_id 6B42 _pdbx_database_PDB_obs_spr.replace_pdb_id 5KM7 _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 3TW2 unspecified PDB . 5IPB unspecified PDB . 5IPC unspecified PDB . 5IPD unspecified PDB . 5IPE unspecified PDB . 5KLY unspecified PDB . 5KLZ unspecified PDB . 5KM0 unspecified PDB . 5KM1 unspecified PDB . 5KM2 unspecified PDB . 5KM3 unspecified PDB . 5KM4 unspecified PDB . 5KM5 unspecified PDB . 5KM6 unspecified PDB . 5KM8 unspecified PDB . 5KM9 unspecified PDB . 5KMA unspecified PDB . 5KMB unspecified PDB . 5KMC unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5KM7 _pdbx_database_status.recvd_initial_deposition_date 2016-06-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Maize, K.M.' 1 'Finzel, B.C.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'THESIS, University of Minnesota Digital Conservancy' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structural Biology for Drug Design: Applications in Two Systems' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # _citation_author.citation_id primary _citation_author.name 'Maize, K.' _citation_author.ordinal 1 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5KM7 _cell.details ? _cell.formula_units_Z ? _cell.length_a 39.738 _cell.length_a_esd ? _cell.length_b 39.738 _cell.length_b_esd ? _cell.length_c 141.133 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KM7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Histidine triad nucleotide-binding protein 1' 14096.188 1 3.-.-.- ? ? ? 2 non-polymer syn "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" 331.222 1 ? ? ? ? 3 water nat water 18.015 136 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Adenosine 5'-monophosphoramidase ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SNAMADEIAKAQVARPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHL MIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMADEIAKAQVARPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHL MIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MET n 1 5 ALA n 1 6 ASP n 1 7 GLU n 1 8 ILE n 1 9 ALA n 1 10 LYS n 1 11 ALA n 1 12 GLN n 1 13 VAL n 1 14 ALA n 1 15 ARG n 1 16 PRO n 1 17 GLY n 1 18 GLY n 1 19 ASP n 1 20 THR n 1 21 ILE n 1 22 PHE n 1 23 GLY n 1 24 LYS n 1 25 ILE n 1 26 ILE n 1 27 ARG n 1 28 LYS n 1 29 GLU n 1 30 ILE n 1 31 PRO n 1 32 ALA n 1 33 LYS n 1 34 ILE n 1 35 ILE n 1 36 PHE n 1 37 GLU n 1 38 ASP n 1 39 ASP n 1 40 ARG n 1 41 CYS n 1 42 LEU n 1 43 ALA n 1 44 PHE n 1 45 HIS n 1 46 ASP n 1 47 ILE n 1 48 SER n 1 49 PRO n 1 50 GLN n 1 51 ALA n 1 52 PRO n 1 53 THR n 1 54 HIS n 1 55 PHE n 1 56 LEU n 1 57 VAL n 1 58 ILE n 1 59 PRO n 1 60 LYS n 1 61 LYS n 1 62 HIS n 1 63 ILE n 1 64 SER n 1 65 GLN n 1 66 ILE n 1 67 SER n 1 68 VAL n 1 69 ALA n 1 70 GLU n 1 71 ASP n 1 72 ASP n 1 73 ASP n 1 74 GLU n 1 75 SER n 1 76 LEU n 1 77 LEU n 1 78 GLY n 1 79 HIS n 1 80 LEU n 1 81 MET n 1 82 ILE n 1 83 VAL n 1 84 GLY n 1 85 LYS n 1 86 LYS n 1 87 CYS n 1 88 ALA n 1 89 ALA n 1 90 ASP n 1 91 LEU n 1 92 GLY n 1 93 LEU n 1 94 ASN n 1 95 LYS n 1 96 GLY n 1 97 TYR n 1 98 ARG n 1 99 MET n 1 100 VAL n 1 101 VAL n 1 102 ASN n 1 103 GLU n 1 104 GLY n 1 105 SER n 1 106 ASP n 1 107 GLY n 1 108 GLY n 1 109 GLN n 1 110 SER n 1 111 VAL n 1 112 TYR n 1 113 HIS n 1 114 VAL n 1 115 HIS n 1 116 LEU n 1 117 HIS n 1 118 VAL n 1 119 LEU n 1 120 GLY n 1 121 GLY n 1 122 ARG n 1 123 GLN n 1 124 MET n 1 125 HIS n 1 126 TRP n 1 127 PRO n 1 128 PRO n 1 129 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 129 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'HINT1, HINT' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta 2 pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code HINT1_HUMAN _struct_ref.pdbx_db_accession P49773 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MADEIAKAQVARPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIV GKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5KM7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 129 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P49773 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 126 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 126 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5KM7 SER A 1 ? UNP P49773 ? ? 'expression tag' -2 1 1 5KM7 ASN A 2 ? UNP P49773 ? ? 'expression tag' -1 2 1 5KM7 ALA A 3 ? UNP P49773 ? ? 'expression tag' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 D5M non-polymer . "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5KM7 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.98 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 37.76 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.7 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '100 mM MES, 33% PEG 8000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-12-15 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 17-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 9.760 _reflns.entry_id 5KM7 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.250 _reflns.d_resolution_low 70.566 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 32500 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 11.900 _reflns.pdbx_Rmerge_I_obs 0.069 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 21.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 387291 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.250 1.254 ? ? 3287 ? ? 296 ? 100.000 ? ? ? ? 0.362 ? ? ? ? ? ? ? ? 11.100 ? ? ? ? ? ? 0 1 1 ? ? 5.801 70.566 ? ? 4072 ? ? 426 ? 100.000 ? ? ? ? 0.047 ? ? ? ? ? ? ? ? 9.600 ? ? ? ? ? ? 0 2 1 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 40.210 _refine.B_iso_mean 12.3824 _refine.B_iso_min 5.530 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5KM7 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.2500 _refine.ls_d_res_low 35.2830 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 32400 _refine.ls_number_reflns_R_free 1644 _refine.ls_number_reflns_R_work 30756 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.9600 _refine.ls_percent_reflns_R_free 5.0700 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1602 _refine.ls_R_factor_R_free 0.1684 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1597 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1KPF _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 14.9800 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.0800 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.2500 _refine_hist.d_res_low 35.2830 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 136 _refine_hist.number_atoms_total 1032 _refine_hist.pdbx_number_residues_total 113 _refine_hist.pdbx_B_iso_mean_ligand 8.47 _refine_hist.pdbx_B_iso_mean_solvent 22.16 _refine_hist.pdbx_number_atoms_protein 874 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? 939 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.325 ? 1278 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.052 ? 138 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 164 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 12.899 ? 353 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.2500 1.2868 2631 . 115 2516 100.0000 . . . 0.2174 . 0.1803 . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.2868 1.3283 2636 . 130 2506 100.0000 . . . 0.1917 . 0.1707 . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.3283 1.3758 2639 . 139 2500 100.0000 . . . 0.1694 . 0.1629 . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.3758 1.4309 2645 . 153 2492 100.0000 . . . 0.1834 . 0.1621 . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.4309 1.4960 2643 . 136 2507 100.0000 . . . 0.1661 . 0.1584 . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.4960 1.5749 2676 . 132 2544 100.0000 . . . 0.1599 . 0.1518 . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.5749 1.6736 2679 . 125 2554 100.0000 . . . 0.1440 . 0.1503 . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.6736 1.8028 2695 . 124 2571 100.0000 . . . 0.1659 . 0.1510 . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.8028 1.9842 2702 . 144 2558 100.0000 . . . 0.1496 . 0.1580 . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.9842 2.2713 2716 . 140 2576 100.0000 . . . 0.1700 . 0.1543 . . . . . . 12 . . . 'X-RAY DIFFRACTION' 2.2713 2.8614 2786 . 168 2618 100.0000 . . . 0.1645 . 0.1701 . . . . . . 12 . . . 'X-RAY DIFFRACTION' 2.8614 35.2973 2952 . 138 2814 100.0000 . . . 0.1752 . 0.1583 . . . . . . 12 . . . # _struct.entry_id 5KM7 _struct.title ;Human Histidine Triad Nucleotide Binding Protein 1 (hHint1) 2'-deoxy-AMP complex ; _struct.pdbx_descriptor 'histidine triad nucleotide-binding protein 1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5KM7 _struct_keywords.text 'HINT, histidine triad, HIT, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 20 ? ARG A 27 ? THR A 17 ARG A 24 1 ? 8 HELX_P HELX_P2 AA2 GLN A 65 ? ALA A 69 ? GLN A 62 ALA A 66 5 ? 5 HELX_P HELX_P3 AA3 GLU A 70 ? ASP A 72 ? GLU A 67 ASP A 69 5 ? 3 HELX_P HELX_P4 AA4 ASP A 73 ? LEU A 91 ? ASP A 70 LEU A 88 1 ? 19 HELX_P HELX_P5 AA5 GLU A 103 ? GLY A 108 ? GLU A 100 GLY A 105 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TRP _struct_mon_prot_cis.label_seq_id 126 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TRP _struct_mon_prot_cis.auth_seq_id 123 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 127 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 124 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.67 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 34 ? GLU A 37 ? ILE A 31 GLU A 34 AA1 2 CYS A 41 ? HIS A 45 ? CYS A 38 HIS A 42 AA1 3 THR A 53 ? PRO A 59 ? THR A 50 PRO A 56 AA1 4 LEU A 116 ? GLY A 120 ? LEU A 113 GLY A 117 AA1 5 TYR A 97 ? VAL A 100 ? TYR A 94 VAL A 97 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N PHE A 36 ? N PHE A 33 O ALA A 43 ? O ALA A 40 AA1 2 3 N LEU A 42 ? N LEU A 39 O ILE A 58 ? O ILE A 55 AA1 3 4 N PHE A 55 ? N PHE A 52 O VAL A 118 ? O VAL A 115 AA1 4 5 O HIS A 117 ? O HIS A 114 N VAL A 100 ? N VAL A 97 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id D5M _struct_site.pdbx_auth_seq_id 201 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 18 _struct_site.details 'binding site for residue D5M A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 PHE A 22 ? PHE A 19 . ? 1_555 ? 2 AC1 18 LYS A 28 ? LYS A 25 . ? 6_555 ? 3 AC1 18 GLU A 37 ? GLU A 34 . ? 6_555 ? 4 AC1 18 HIS A 45 ? HIS A 42 . ? 1_555 ? 5 AC1 18 ASP A 46 ? ASP A 43 . ? 1_555 ? 6 AC1 18 ILE A 47 ? ILE A 44 . ? 1_555 ? 7 AC1 18 LEU A 56 ? LEU A 53 . ? 1_555 ? 8 AC1 18 ASN A 102 ? ASN A 99 . ? 1_555 ? 9 AC1 18 GLY A 108 ? GLY A 105 . ? 1_555 ? 10 AC1 18 GLN A 109 ? GLN A 106 . ? 1_555 ? 11 AC1 18 SER A 110 ? SER A 107 . ? 1_555 ? 12 AC1 18 VAL A 111 ? VAL A 108 . ? 1_555 ? 13 AC1 18 HIS A 115 ? HIS A 112 . ? 1_555 ? 14 AC1 18 HIS A 117 ? HIS A 114 . ? 1_555 ? 15 AC1 18 HOH C . ? HOH A 325 . ? 1_555 ? 16 AC1 18 HOH C . ? HOH A 339 . ? 1_555 ? 17 AC1 18 HOH C . ? HOH A 363 . ? 1_555 ? 18 AC1 18 HOH C . ? HOH A 367 . ? 1_555 ? # _atom_sites.entry_id 5KM7 _atom_sites.fract_transf_matrix[1][1] 0.025165 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025165 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007086 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MET 4 1 ? ? ? A . n A 1 5 ALA 5 2 ? ? ? A . n A 1 6 ASP 6 3 ? ? ? A . n A 1 7 GLU 7 4 ? ? ? A . n A 1 8 ILE 8 5 ? ? ? A . n A 1 9 ALA 9 6 ? ? ? A . n A 1 10 LYS 10 7 ? ? ? A . n A 1 11 ALA 11 8 ? ? ? A . n A 1 12 GLN 12 9 ? ? ? A . n A 1 13 VAL 13 10 ? ? ? A . n A 1 14 ALA 14 11 ? ? ? A . n A 1 15 ARG 15 12 ? ? ? A . n A 1 16 PRO 16 13 ? ? ? A . n A 1 17 GLY 17 14 14 GLY GLY A . n A 1 18 GLY 18 15 15 GLY GLY A . n A 1 19 ASP 19 16 16 ASP ASP A . n A 1 20 THR 20 17 17 THR THR A . n A 1 21 ILE 21 18 18 ILE ILE A . n A 1 22 PHE 22 19 19 PHE PHE A . n A 1 23 GLY 23 20 20 GLY GLY A . n A 1 24 LYS 24 21 21 LYS LYS A . n A 1 25 ILE 25 22 22 ILE ILE A . n A 1 26 ILE 26 23 23 ILE ILE A . n A 1 27 ARG 27 24 24 ARG ARG A . n A 1 28 LYS 28 25 25 LYS LYS A . n A 1 29 GLU 29 26 26 GLU GLU A . n A 1 30 ILE 30 27 27 ILE ILE A . n A 1 31 PRO 31 28 28 PRO PRO A . n A 1 32 ALA 32 29 29 ALA ALA A . n A 1 33 LYS 33 30 30 LYS LYS A . n A 1 34 ILE 34 31 31 ILE ILE A . n A 1 35 ILE 35 32 32 ILE ILE A . n A 1 36 PHE 36 33 33 PHE PHE A . n A 1 37 GLU 37 34 34 GLU GLU A . n A 1 38 ASP 38 35 35 ASP ASP A . n A 1 39 ASP 39 36 36 ASP ASP A . n A 1 40 ARG 40 37 37 ARG ARG A . n A 1 41 CYS 41 38 38 CYS CYS A . n A 1 42 LEU 42 39 39 LEU LEU A . n A 1 43 ALA 43 40 40 ALA ALA A . n A 1 44 PHE 44 41 41 PHE PHE A . n A 1 45 HIS 45 42 42 HIS HIS A . n A 1 46 ASP 46 43 43 ASP ASP A . n A 1 47 ILE 47 44 44 ILE ILE A . n A 1 48 SER 48 45 45 SER SER A . n A 1 49 PRO 49 46 46 PRO PRO A . n A 1 50 GLN 50 47 47 GLN GLN A . n A 1 51 ALA 51 48 48 ALA ALA A . n A 1 52 PRO 52 49 49 PRO PRO A . n A 1 53 THR 53 50 50 THR THR A . n A 1 54 HIS 54 51 51 HIS HIS A . n A 1 55 PHE 55 52 52 PHE PHE A . n A 1 56 LEU 56 53 53 LEU LEU A . n A 1 57 VAL 57 54 54 VAL VAL A . n A 1 58 ILE 58 55 55 ILE ILE A . n A 1 59 PRO 59 56 56 PRO PRO A . n A 1 60 LYS 60 57 57 LYS LYS A . n A 1 61 LYS 61 58 58 LYS LYS A . n A 1 62 HIS 62 59 59 HIS HIS A . n A 1 63 ILE 63 60 60 ILE ILE A . n A 1 64 SER 64 61 61 SER SER A . n A 1 65 GLN 65 62 62 GLN GLN A . n A 1 66 ILE 66 63 63 ILE ILE A . n A 1 67 SER 67 64 64 SER SER A . n A 1 68 VAL 68 65 65 VAL VAL A . n A 1 69 ALA 69 66 66 ALA ALA A . n A 1 70 GLU 70 67 67 GLU GLU A . n A 1 71 ASP 71 68 68 ASP ASP A . n A 1 72 ASP 72 69 69 ASP ASP A . n A 1 73 ASP 73 70 70 ASP ASP A . n A 1 74 GLU 74 71 71 GLU GLU A . n A 1 75 SER 75 72 72 SER SER A . n A 1 76 LEU 76 73 73 LEU LEU A . n A 1 77 LEU 77 74 74 LEU LEU A . n A 1 78 GLY 78 75 75 GLY GLY A . n A 1 79 HIS 79 76 76 HIS HIS A . n A 1 80 LEU 80 77 77 LEU LEU A . n A 1 81 MET 81 78 78 MET MET A . n A 1 82 ILE 82 79 79 ILE ILE A . n A 1 83 VAL 83 80 80 VAL VAL A . n A 1 84 GLY 84 81 81 GLY GLY A . n A 1 85 LYS 85 82 82 LYS LYS A . n A 1 86 LYS 86 83 83 LYS LYS A . n A 1 87 CYS 87 84 84 CYS CYS A . n A 1 88 ALA 88 85 85 ALA ALA A . n A 1 89 ALA 89 86 86 ALA ALA A . n A 1 90 ASP 90 87 87 ASP ASP A . n A 1 91 LEU 91 88 88 LEU LEU A . n A 1 92 GLY 92 89 89 GLY GLY A . n A 1 93 LEU 93 90 90 LEU LEU A . n A 1 94 ASN 94 91 91 ASN ASN A . n A 1 95 LYS 95 92 92 LYS LYS A . n A 1 96 GLY 96 93 93 GLY GLY A . n A 1 97 TYR 97 94 94 TYR TYR A . n A 1 98 ARG 98 95 95 ARG ARG A . n A 1 99 MET 99 96 96 MET MET A . n A 1 100 VAL 100 97 97 VAL VAL A . n A 1 101 VAL 101 98 98 VAL VAL A . n A 1 102 ASN 102 99 99 ASN ASN A . n A 1 103 GLU 103 100 100 GLU GLU A . n A 1 104 GLY 104 101 101 GLY GLY A . n A 1 105 SER 105 102 102 SER SER A . n A 1 106 ASP 106 103 103 ASP ASP A . n A 1 107 GLY 107 104 104 GLY GLY A . n A 1 108 GLY 108 105 105 GLY GLY A . n A 1 109 GLN 109 106 106 GLN GLN A . n A 1 110 SER 110 107 107 SER SER A . n A 1 111 VAL 111 108 108 VAL VAL A . n A 1 112 TYR 112 109 109 TYR TYR A . n A 1 113 HIS 113 110 110 HIS HIS A . n A 1 114 VAL 114 111 111 VAL VAL A . n A 1 115 HIS 115 112 112 HIS HIS A . n A 1 116 LEU 116 113 113 LEU LEU A . n A 1 117 HIS 117 114 114 HIS HIS A . n A 1 118 VAL 118 115 115 VAL VAL A . n A 1 119 LEU 119 116 116 LEU LEU A . n A 1 120 GLY 120 117 117 GLY GLY A . n A 1 121 GLY 121 118 118 GLY GLY A . n A 1 122 ARG 122 119 119 ARG ARG A . n A 1 123 GLN 123 120 120 GLN GLN A . n A 1 124 MET 124 121 121 MET MET A . n A 1 125 HIS 125 122 122 HIS HIS A . n A 1 126 TRP 126 123 123 TRP TRP A . n A 1 127 PRO 127 124 124 PRO PRO A . n A 1 128 PRO 128 125 125 PRO PRO A . n A 1 129 GLY 129 126 126 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D5M 1 201 1 D5M D5M A . C 3 HOH 1 301 136 HOH HOH A . C 3 HOH 2 302 84 HOH HOH A . C 3 HOH 3 303 27 HOH HOH A . C 3 HOH 4 304 105 HOH HOH A . C 3 HOH 5 305 82 HOH HOH A . C 3 HOH 6 306 4 HOH HOH A . C 3 HOH 7 307 74 HOH HOH A . C 3 HOH 8 308 83 HOH HOH A . C 3 HOH 9 309 137 HOH HOH A . C 3 HOH 10 310 13 HOH HOH A . C 3 HOH 11 311 39 HOH HOH A . C 3 HOH 12 312 58 HOH HOH A . C 3 HOH 13 313 14 HOH HOH A . C 3 HOH 14 314 69 HOH HOH A . C 3 HOH 15 315 47 HOH HOH A . C 3 HOH 16 316 8 HOH HOH A . C 3 HOH 17 317 36 HOH HOH A . C 3 HOH 18 318 71 HOH HOH A . C 3 HOH 19 319 5 HOH HOH A . C 3 HOH 20 320 28 HOH HOH A . C 3 HOH 21 321 60 HOH HOH A . C 3 HOH 22 322 89 HOH HOH A . C 3 HOH 23 323 40 HOH HOH A . C 3 HOH 24 324 70 HOH HOH A . C 3 HOH 25 325 17 HOH HOH A . C 3 HOH 26 326 48 HOH HOH A . C 3 HOH 27 327 9 HOH HOH A . C 3 HOH 28 328 110 HOH HOH A . C 3 HOH 29 329 45 HOH HOH A . C 3 HOH 30 330 57 HOH HOH A . C 3 HOH 31 331 49 HOH HOH A . C 3 HOH 32 332 121 HOH HOH A . C 3 HOH 33 333 129 HOH HOH A . C 3 HOH 34 334 15 HOH HOH A . C 3 HOH 35 335 20 HOH HOH A . C 3 HOH 36 336 5 HOH HOH A . C 3 HOH 37 337 24 HOH HOH A . C 3 HOH 38 338 43 HOH HOH A . C 3 HOH 39 339 22 HOH HOH A . C 3 HOH 40 340 102 HOH HOH A . C 3 HOH 41 341 35 HOH HOH A . C 3 HOH 42 342 37 HOH HOH A . C 3 HOH 43 343 10 HOH HOH A . C 3 HOH 44 344 30 HOH HOH A . C 3 HOH 45 345 53 HOH HOH A . C 3 HOH 46 346 33 HOH HOH A . C 3 HOH 47 347 55 HOH HOH A . C 3 HOH 48 348 6 HOH HOH A . C 3 HOH 49 349 68 HOH HOH A . C 3 HOH 50 350 46 HOH HOH A . C 3 HOH 51 351 34 HOH HOH A . C 3 HOH 52 352 50 HOH HOH A . C 3 HOH 53 353 73 HOH HOH A . C 3 HOH 54 354 127 HOH HOH A . C 3 HOH 55 355 11 HOH HOH A . C 3 HOH 56 356 113 HOH HOH A . C 3 HOH 57 357 3 HOH HOH A . C 3 HOH 58 358 97 HOH HOH A . C 3 HOH 59 359 106 HOH HOH A . C 3 HOH 60 360 44 HOH HOH A . C 3 HOH 61 361 56 HOH HOH A . C 3 HOH 62 362 72 HOH HOH A . C 3 HOH 63 363 1 HOH HOH A . C 3 HOH 64 364 18 HOH HOH A . C 3 HOH 65 365 54 HOH HOH A . C 3 HOH 66 366 21 HOH HOH A . C 3 HOH 67 367 12 HOH HOH A . C 3 HOH 68 368 32 HOH HOH A . C 3 HOH 69 369 93 HOH HOH A . C 3 HOH 70 370 51 HOH HOH A . C 3 HOH 71 371 108 HOH HOH A . C 3 HOH 72 372 94 HOH HOH A . C 3 HOH 73 373 111 HOH HOH A . C 3 HOH 74 374 75 HOH HOH A . C 3 HOH 75 375 19 HOH HOH A . C 3 HOH 76 376 11 HOH HOH A . C 3 HOH 77 377 112 HOH HOH A . C 3 HOH 78 378 126 HOH HOH A . C 3 HOH 79 379 61 HOH HOH A . C 3 HOH 80 380 88 HOH HOH A . C 3 HOH 81 381 23 HOH HOH A . C 3 HOH 82 382 131 HOH HOH A . C 3 HOH 83 383 59 HOH HOH A . C 3 HOH 84 384 16 HOH HOH A . C 3 HOH 85 385 66 HOH HOH A . C 3 HOH 86 386 2 HOH HOH A . C 3 HOH 87 387 26 HOH HOH A . C 3 HOH 88 388 41 HOH HOH A . C 3 HOH 89 389 67 HOH HOH A . C 3 HOH 90 390 80 HOH HOH A . C 3 HOH 91 391 25 HOH HOH A . C 3 HOH 92 392 64 HOH HOH A . C 3 HOH 93 393 123 HOH HOH A . C 3 HOH 94 394 78 HOH HOH A . C 3 HOH 95 395 38 HOH HOH A . C 3 HOH 96 396 31 HOH HOH A . C 3 HOH 97 397 90 HOH HOH A . C 3 HOH 98 398 100 HOH HOH A . C 3 HOH 99 399 29 HOH HOH A . C 3 HOH 100 400 116 HOH HOH A . C 3 HOH 101 401 133 HOH HOH A . C 3 HOH 102 402 7 HOH HOH A . C 3 HOH 103 403 65 HOH HOH A . C 3 HOH 104 404 52 HOH HOH A . C 3 HOH 105 405 122 HOH HOH A . C 3 HOH 106 406 4 HOH HOH A . C 3 HOH 107 407 120 HOH HOH A . C 3 HOH 108 408 79 HOH HOH A . C 3 HOH 109 409 76 HOH HOH A . C 3 HOH 110 410 62 HOH HOH A . C 3 HOH 111 411 119 HOH HOH A . C 3 HOH 112 412 103 HOH HOH A . C 3 HOH 113 413 77 HOH HOH A . C 3 HOH 114 414 8 HOH HOH A . C 3 HOH 115 415 3 HOH HOH A . C 3 HOH 116 416 12 HOH HOH A . C 3 HOH 117 417 135 HOH HOH A . C 3 HOH 118 418 87 HOH HOH A . C 3 HOH 119 419 125 HOH HOH A . C 3 HOH 120 420 6 HOH HOH A . C 3 HOH 121 421 86 HOH HOH A . C 3 HOH 122 422 101 HOH HOH A . C 3 HOH 123 423 118 HOH HOH A . C 3 HOH 124 424 132 HOH HOH A . C 3 HOH 125 425 96 HOH HOH A . C 3 HOH 126 426 81 HOH HOH A . C 3 HOH 127 427 109 HOH HOH A . C 3 HOH 128 428 114 HOH HOH A . C 3 HOH 129 429 115 HOH HOH A . C 3 HOH 130 430 42 HOH HOH A . C 3 HOH 131 431 128 HOH HOH A . C 3 HOH 132 432 98 HOH HOH A . C 3 HOH 133 433 95 HOH HOH A . C 3 HOH 134 434 63 HOH HOH A . C 3 HOH 135 435 117 HOH HOH A . C 3 HOH 136 436 85 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5060 ? 1 MORE -28 ? 1 'SSA (A^2)' 9800 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-06-28 2 'Structure model' 1 1 2017-07-26 3 'Structure model' 1 2 2017-10-18 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 3 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Database references' 3 3 'Structure model' Advisory 4 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation_author 2 2 'Structure model' pdbx_audit_support 3 3 'Structure model' pdbx_database_PDB_obs_spr 4 3 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_pdbx_database_status.status_code' 3 3 'Structure model' '_pdbx_database_status.status_code_sf' # _pdbx_phasing_MR.entry_id 5KM7 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 4.650 _pdbx_phasing_MR.d_res_low_rotation 38.250 _pdbx_phasing_MR.d_res_high_translation 4.650 _pdbx_phasing_MR.d_res_low_translation 38.250 # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.14 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(phenix.refine: 1.8.4_1496)' 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 5 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? 2.5.1 6 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A MET 1 ? A MET 4 5 1 Y 1 A ALA 2 ? A ALA 5 6 1 Y 1 A ASP 3 ? A ASP 6 7 1 Y 1 A GLU 4 ? A GLU 7 8 1 Y 1 A ILE 5 ? A ILE 8 9 1 Y 1 A ALA 6 ? A ALA 9 10 1 Y 1 A LYS 7 ? A LYS 10 11 1 Y 1 A ALA 8 ? A ALA 11 12 1 Y 1 A GLN 9 ? A GLN 12 13 1 Y 1 A VAL 10 ? A VAL 13 14 1 Y 1 A ALA 11 ? A ALA 14 15 1 Y 1 A ARG 12 ? A ARG 15 16 1 Y 1 A PRO 13 ? A PRO 16 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Minnesota Dept. of Employment and Economic Development' 'United States' SPAP-06-0014-P-FY07 1 'National Institutes of Health/National Institute of General Medical Sciences' 'United States' GM08700 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" D5M 3 water HOH #