HEADER OXIDOREDUCTASE 27-JUN-16 5KMP TITLE THE STRUCTURE OF G164E VARIANT OF TYPE II NADH DEHYDROGENASE FROM TITLE 2 CALDALKALIBACILLUS THERMARUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAD-DEPENDENT PYRIDINE NUCLEOTIDE-DISULFIDE OXIDOREDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CALDALKALIBACILLUS THERMARUM TA2.A1; SOURCE 3 ORGANISM_TAXID: 986075; SOURCE 4 GENE: CATHTA2_0279; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C41 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTRC99A KEYWDS ROSSMANN FOLD, NADH DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.M.COOK,D.ARAGAO,Y.NAKATANI REVDAT 3 25-OCT-23 5KMP 1 REMARK REVDAT 2 29-MAR-23 5KMP 1 AUTHOR JRNL REMARK REVDAT 1 25-JAN-17 5KMP 0 JRNL AUTH J.N.BLAZA,H.R.BRIDGES,D.ARAGAO,E.A.DUNN,A.HEIKAL,G.M.COOK, JRNL AUTH 2 Y.NAKATANI,J.HIRST JRNL TITL THE MECHANISM OF CATALYSIS BY TYPE-II NADH:QUINONE JRNL TITL 2 OXIDOREDUCTASES. JRNL REF SCI REP V. 7 40165 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28067272 JRNL DOI 10.1038/SREP40165 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 18713 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7578 - 6.1175 0.98 2685 147 0.1745 0.2056 REMARK 3 2 6.1175 - 4.8574 0.99 2549 151 0.1983 0.2119 REMARK 3 3 4.8574 - 4.2439 0.99 2520 144 0.1810 0.1995 REMARK 3 4 4.2439 - 3.8561 1.00 2504 128 0.2068 0.2545 REMARK 3 5 3.8561 - 3.5798 1.00 2520 130 0.2324 0.2953 REMARK 3 6 3.5798 - 3.3688 1.00 2495 123 0.2467 0.3104 REMARK 3 7 3.3688 - 3.2001 1.00 2482 135 0.2801 0.3069 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5798 REMARK 3 ANGLE : 0.943 7956 REMARK 3 CHIRALITY : 0.033 944 REMARK 3 PLANARITY : 0.008 1023 REMARK 3 DIHEDRAL : 15.953 1903 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KMP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000215207. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18732 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 46.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : 0.12100 REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : 0.68400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4NWZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BICINE/TRIS BUFFER PH8.5 REMARK 280 INCLUDING 10% (V/V) PEG 4000, 25% (V/V) ETHYLENE GLYCOL AND 30 REMARK 280 MM D, L-LYSINE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 124.24150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.54900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.54900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.12075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.54900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.54900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 186.36225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.54900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.54900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 62.12075 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.54900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.54900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 186.36225 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 124.24150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 397 REMARK 465 ARG A 398 REMARK 465 PHE A 399 REMARK 465 HIS A 400 REMARK 465 HIS A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 465 HIS A 404 REMARK 465 HIS A 405 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ARG B 398 REMARK 465 PHE B 399 REMARK 465 HIS B 400 REMARK 465 HIS B 401 REMARK 465 HIS B 402 REMARK 465 HIS B 403 REMARK 465 HIS B 404 REMARK 465 HIS B 405 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 ARG A 25 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 27 CG OD1 ND2 REMARK 470 TYR A 28 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 29 CG OD1 ND2 REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 ASP A 40 CG OD1 OD2 REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 GLN A 60 CG CD OE1 NE2 REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 ASP A 70 CG OD1 OD2 REMARK 470 GLU A 71 CG CD OE1 OE2 REMARK 470 LYS A 72 CG CD CE NZ REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 ARG A 86 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 GLN A 88 CG CD OE1 NE2 REMARK 470 GLN A 89 CG CD OE1 NE2 REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 GLU A 97 CG CD OE1 OE2 REMARK 470 TYR A 102 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 110 CG CD OE1 OE2 REMARK 470 ARG A 120 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 GLU A 151 CG CD OE1 OE2 REMARK 470 GLU A 164 CG CD OE1 OE2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 VAL A 203 CG1 CG2 REMARK 470 LEU A 204 CG CD1 CD2 REMARK 470 PHE A 207 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 208 CG OD1 OD2 REMARK 470 LEU A 211 CG CD1 CD2 REMARK 470 VAL A 212 CG1 CG2 REMARK 470 ASN A 213 CG OD1 ND2 REMARK 470 ASP A 217 CG OD1 OD2 REMARK 470 LYS A 227 CG CD CE NZ REMARK 470 LYS A 233 CG CD CE NZ REMARK 470 GLU A 238 CG CD OE1 OE2 REMARK 470 GLU A 243 CG CD OE1 OE2 REMARK 470 ASP A 245 CG OD1 OD2 REMARK 470 GLU A 247 CG CD OE1 OE2 REMARK 470 GLU A 249 CG CD OE1 OE2 REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 LYS A 270 CG CD CE NZ REMARK 470 GLU A 274 CG CD OE1 OE2 REMARK 470 MET A 276 CG SD CE REMARK 470 LYS A 281 CG CD CE NZ REMARK 470 ASP A 283 CG OD1 OD2 REMARK 470 TYR A 285 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 286 CG CD1 CD2 REMARK 470 ARG A 287 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 292 CG CD OE1 OE2 REMARK 470 ASN A 305 CG OD1 ND2 REMARK 470 GLU A 306 CG CD OE1 OE2 REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 ASN A 308 CG OD1 ND2 REMARK 470 ASN A 309 CG OD1 ND2 REMARK 470 ARG A 310 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 324 CG CD OE1 OE2 REMARK 470 LEU A 333 CG CD1 CD2 REMARK 470 ILE A 334 CG1 CG2 CD1 REMARK 470 ARG A 335 CG CD NE CZ NH1 NH2 REMARK 470 SER A 338 OG REMARK 470 LYS A 343 CG CD CE NZ REMARK 470 ARG A 347 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 355 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 356 CG OD1 ND2 REMARK 470 ILE A 361 CG1 CG2 CD1 REMARK 470 VAL A 362 CG1 CG2 REMARK 470 ARG A 365 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 366 CG CD CE NZ REMARK 470 VAL A 367 CG1 CG2 REMARK 470 TYR A 368 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 375 CG CD1 CD2 REMARK 470 LYS A 377 CG CD CE NZ REMARK 470 LEU A 378 CG CD1 CD2 REMARK 470 ASP A 380 CG OD1 OD2 REMARK 470 MET A 381 CG SD CE REMARK 470 ARG A 382 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 386 CG CD1 CD2 REMARK 470 LEU A 390 CG CD1 CD2 REMARK 470 SER A 391 OG REMARK 470 LEU A 392 CG CD1 CD2 REMARK 470 LEU A 394 CG CD1 CD2 REMARK 470 LYS A 395 CG CD CE NZ REMARK 470 LYS A 396 CG CD CE NZ REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 LYS B 24 CG CD CE NZ REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 GLU B 67 CG CD OE1 OE2 REMARK 470 ASP B 70 CG OD1 OD2 REMARK 470 GLU B 71 CG CD OE1 OE2 REMARK 470 LYS B 72 CG CD CE NZ REMARK 470 LYS B 75 CG CD CE NZ REMARK 470 GLU B 87 CG CD OE1 OE2 REMARK 470 GLN B 88 CG CD OE1 NE2 REMARK 470 GLU B 117 CG CD OE1 OE2 REMARK 470 ARG B 120 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 121 CG CD OE1 OE2 REMARK 470 GLU B 151 CG CD OE1 OE2 REMARK 470 GLU B 180 CG CD OE1 OE2 REMARK 470 LYS B 190 CG CD CE NZ REMARK 470 LYS B 222 CD CE NZ REMARK 470 LYS B 233 CG CD CE NZ REMARK 470 GLU B 243 CG CD OE1 OE2 REMARK 470 ASP B 245 CG OD1 OD2 REMARK 470 GLU B 247 CG CD OE1 OE2 REMARK 470 GLU B 248 CG CD OE1 OE2 REMARK 470 GLU B 249 CG CD OE1 OE2 REMARK 470 GLU B 250 CG CD OE1 OE2 REMARK 470 LYS B 252 CG CD CE NZ REMARK 470 MET B 276 CG SD CE REMARK 470 ARG B 277 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 281 CG CD CE NZ REMARK 470 GLU B 292 CG CD OE1 OE2 REMARK 470 ASN B 305 CG OD1 ND2 REMARK 470 GLU B 306 CG CD OE1 OE2 REMARK 470 GLU B 307 CG CD OE1 OE2 REMARK 470 ASN B 309 CG OD1 ND2 REMARK 470 GLU B 324 CG CD OE1 OE2 REMARK 470 LYS B 343 CG CD CE NZ REMARK 470 ARG B 347 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 355 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 356 CG OD1 ND2 REMARK 470 ARG B 365 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 378 CG CD1 CD2 REMARK 470 LEU B 390 CG CD1 CD2 REMARK 470 LEU B 392 CG CD1 CD2 REMARK 470 LEU B 394 CG CD1 CD2 REMARK 470 LYS B 395 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 29 -0.68 74.31 REMARK 500 LYS A 72 -42.83 141.70 REMARK 500 GLU A 164 -169.79 -76.00 REMARK 500 ASN A 309 31.63 -72.23 REMARK 500 LYS A 366 75.60 44.72 REMARK 500 LYS A 395 5.43 -68.14 REMARK 500 ASN B 29 -3.81 75.84 REMARK 500 GLU B 164 -169.94 -76.12 REMARK 500 ASN B 309 33.99 -70.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KMQ RELATED DB: PDB REMARK 900 RELATED ID: 5KMR RELATED DB: PDB REMARK 900 RELATED ID: 5KMS RELATED DB: PDB DBREF 5KMP A 1 399 UNP F5L3B8 F5L3B8_9BACI 1 399 DBREF 5KMP B 1 399 UNP F5L3B8 F5L3B8_9BACI 1 399 SEQADV 5KMP GLU A 164 UNP F5L3B8 GLY 164 ENGINEERED MUTATION SEQADV 5KMP HIS A 400 UNP F5L3B8 EXPRESSION TAG SEQADV 5KMP HIS A 401 UNP F5L3B8 EXPRESSION TAG SEQADV 5KMP HIS A 402 UNP F5L3B8 EXPRESSION TAG SEQADV 5KMP HIS A 403 UNP F5L3B8 EXPRESSION TAG SEQADV 5KMP HIS A 404 UNP F5L3B8 EXPRESSION TAG SEQADV 5KMP HIS A 405 UNP F5L3B8 EXPRESSION TAG SEQADV 5KMP GLU B 164 UNP F5L3B8 GLY 164 ENGINEERED MUTATION SEQADV 5KMP HIS B 400 UNP F5L3B8 EXPRESSION TAG SEQADV 5KMP HIS B 401 UNP F5L3B8 EXPRESSION TAG SEQADV 5KMP HIS B 402 UNP F5L3B8 EXPRESSION TAG SEQADV 5KMP HIS B 403 UNP F5L3B8 EXPRESSION TAG SEQADV 5KMP HIS B 404 UNP F5L3B8 EXPRESSION TAG SEQADV 5KMP HIS B 405 UNP F5L3B8 EXPRESSION TAG SEQRES 1 A 405 MET SER LYS PRO SER ILE VAL ILE LEU GLY ALA GLY TYR SEQRES 2 A 405 GLY GLY ILE VAL ALA ALA LEU GLY LEU GLN LYS ARG LEU SEQRES 3 A 405 ASN TYR ASN GLU ALA ASP ILE THR LEU VAL ASN LYS ASN SEQRES 4 A 405 ASP TYR HIS TYR ILE THR THR GLU LEU HIS GLN PRO ALA SEQRES 5 A 405 ALA GLY THR MET HIS HIS ASP GLN ALA ARG VAL GLY ILE SEQRES 6 A 405 LYS GLU LEU ILE ASP GLU LYS LYS ILE LYS PHE VAL LYS SEQRES 7 A 405 ASP THR VAL VAL ALA ILE ASP ARG GLU GLN GLN LYS VAL SEQRES 8 A 405 THR LEU GLN ASN GLY GLU LEU HIS TYR ASP TYR LEU VAL SEQRES 9 A 405 VAL GLY LEU GLY SER GLU PRO GLU THR PHE GLY ILE GLU SEQRES 10 A 405 GLY LEU ARG GLU HIS ALA PHE SER ILE ASN SER ILE ASN SEQRES 11 A 405 SER VAL ARG ILE ILE ARG GLN HIS ILE GLU TYR GLN PHE SEQRES 12 A 405 ALA LYS PHE ALA ALA GLU PRO GLU ARG THR ASP TYR LEU SEQRES 13 A 405 THR ILE VAL VAL GLY GLY ALA GLU PHE THR GLY ILE GLU SEQRES 14 A 405 PHE VAL GLY GLU LEU ALA ASP ARG MET PRO GLU LEU CYS SEQRES 15 A 405 ALA GLU TYR ASP VAL ASP PRO LYS LEU VAL ARG ILE ILE SEQRES 16 A 405 ASN VAL GLU ALA ALA PRO THR VAL LEU PRO GLY PHE ASP SEQRES 17 A 405 PRO ALA LEU VAL ASN TYR ALA MET ASP VAL LEU GLY GLY SEQRES 18 A 405 LYS GLY VAL GLU PHE LYS ILE GLY THR PRO ILE LYS ARG SEQRES 19 A 405 CYS THR PRO GLU GLY VAL VAL ILE GLU VAL ASP GLY GLU SEQRES 20 A 405 GLU GLU GLU ILE LYS ALA ALA THR VAL VAL TRP THR GLY SEQRES 21 A 405 GLY VAL ARG GLY ASN SER ILE VAL GLU LYS SER GLY PHE SEQRES 22 A 405 GLU THR MET ARG GLY ARG ILE LYS VAL ASP PRO TYR LEU SEQRES 23 A 405 ARG ALA PRO GLY HIS GLU ASN ILE PHE ILE VAL GLY ASP SEQRES 24 A 405 CYS ALA LEU ILE ILE ASN GLU GLU ASN ASN ARG PRO TYR SEQRES 25 A 405 PRO PRO THR ALA GLN ILE ALA ILE GLN HIS GLY GLU ASN SEQRES 26 A 405 VAL ALA ALA ASN LEU ALA ALA LEU ILE ARG GLY GLY SER SEQRES 27 A 405 MET THR PRO PHE LYS PRO HIS ILE ARG GLY THR VAL ALA SEQRES 28 A 405 SER LEU GLY ARG ASN ASP ALA ILE GLY ILE VAL GLY GLY SEQRES 29 A 405 ARG LYS VAL TYR GLY HIS ALA ALA SER TRP LEU LYS LYS SEQRES 30 A 405 LEU ILE ASP MET ARG TYR LEU TYR LEU ILE GLY GLY LEU SEQRES 31 A 405 SER LEU VAL LEU LYS LYS GLY ARG PHE HIS HIS HIS HIS SEQRES 32 A 405 HIS HIS SEQRES 1 B 405 MET SER LYS PRO SER ILE VAL ILE LEU GLY ALA GLY TYR SEQRES 2 B 405 GLY GLY ILE VAL ALA ALA LEU GLY LEU GLN LYS ARG LEU SEQRES 3 B 405 ASN TYR ASN GLU ALA ASP ILE THR LEU VAL ASN LYS ASN SEQRES 4 B 405 ASP TYR HIS TYR ILE THR THR GLU LEU HIS GLN PRO ALA SEQRES 5 B 405 ALA GLY THR MET HIS HIS ASP GLN ALA ARG VAL GLY ILE SEQRES 6 B 405 LYS GLU LEU ILE ASP GLU LYS LYS ILE LYS PHE VAL LYS SEQRES 7 B 405 ASP THR VAL VAL ALA ILE ASP ARG GLU GLN GLN LYS VAL SEQRES 8 B 405 THR LEU GLN ASN GLY GLU LEU HIS TYR ASP TYR LEU VAL SEQRES 9 B 405 VAL GLY LEU GLY SER GLU PRO GLU THR PHE GLY ILE GLU SEQRES 10 B 405 GLY LEU ARG GLU HIS ALA PHE SER ILE ASN SER ILE ASN SEQRES 11 B 405 SER VAL ARG ILE ILE ARG GLN HIS ILE GLU TYR GLN PHE SEQRES 12 B 405 ALA LYS PHE ALA ALA GLU PRO GLU ARG THR ASP TYR LEU SEQRES 13 B 405 THR ILE VAL VAL GLY GLY ALA GLU PHE THR GLY ILE GLU SEQRES 14 B 405 PHE VAL GLY GLU LEU ALA ASP ARG MET PRO GLU LEU CYS SEQRES 15 B 405 ALA GLU TYR ASP VAL ASP PRO LYS LEU VAL ARG ILE ILE SEQRES 16 B 405 ASN VAL GLU ALA ALA PRO THR VAL LEU PRO GLY PHE ASP SEQRES 17 B 405 PRO ALA LEU VAL ASN TYR ALA MET ASP VAL LEU GLY GLY SEQRES 18 B 405 LYS GLY VAL GLU PHE LYS ILE GLY THR PRO ILE LYS ARG SEQRES 19 B 405 CYS THR PRO GLU GLY VAL VAL ILE GLU VAL ASP GLY GLU SEQRES 20 B 405 GLU GLU GLU ILE LYS ALA ALA THR VAL VAL TRP THR GLY SEQRES 21 B 405 GLY VAL ARG GLY ASN SER ILE VAL GLU LYS SER GLY PHE SEQRES 22 B 405 GLU THR MET ARG GLY ARG ILE LYS VAL ASP PRO TYR LEU SEQRES 23 B 405 ARG ALA PRO GLY HIS GLU ASN ILE PHE ILE VAL GLY ASP SEQRES 24 B 405 CYS ALA LEU ILE ILE ASN GLU GLU ASN ASN ARG PRO TYR SEQRES 25 B 405 PRO PRO THR ALA GLN ILE ALA ILE GLN HIS GLY GLU ASN SEQRES 26 B 405 VAL ALA ALA ASN LEU ALA ALA LEU ILE ARG GLY GLY SER SEQRES 27 B 405 MET THR PRO PHE LYS PRO HIS ILE ARG GLY THR VAL ALA SEQRES 28 B 405 SER LEU GLY ARG ASN ASP ALA ILE GLY ILE VAL GLY GLY SEQRES 29 B 405 ARG LYS VAL TYR GLY HIS ALA ALA SER TRP LEU LYS LYS SEQRES 30 B 405 LEU ILE ASP MET ARG TYR LEU TYR LEU ILE GLY GLY LEU SEQRES 31 B 405 SER LEU VAL LEU LYS LYS GLY ARG PHE HIS HIS HIS HIS SEQRES 32 B 405 HIS HIS HET FAD A 601 53 HET FAD B 601 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 HOH *4(H2 O) HELIX 1 AA1 GLY A 12 LEU A 26 1 15 HELIX 2 AA2 THR A 45 GLU A 47 5 3 HELIX 3 AA3 LEU A 48 GLY A 54 1 7 HELIX 4 AA4 HIS A 57 GLN A 60 5 4 HELIX 5 AA5 ILE A 65 ILE A 69 1 5 HELIX 6 AA6 GLY A 118 ALA A 123 1 6 HELIX 7 AA7 SER A 128 ALA A 147 1 20 HELIX 8 AA8 ARG A 152 TYR A 155 5 4 HELIX 9 AA9 GLU A 164 TYR A 185 1 22 HELIX 10 AB1 ASP A 188 VAL A 192 5 5 HELIX 11 AB2 ASP A 208 LYS A 222 1 15 HELIX 12 AB3 ASN A 265 SER A 271 1 7 HELIX 13 AB4 THR A 315 GLY A 336 1 22 HELIX 14 AB5 VAL A 362 ARG A 365 5 4 HELIX 15 AB6 GLY A 369 GLY A 389 1 21 HELIX 16 AB7 GLY A 389 LYS A 395 1 7 HELIX 17 AB8 GLY B 12 LEU B 26 1 15 HELIX 18 AB9 THR B 45 GLU B 47 5 3 HELIX 19 AC1 LEU B 48 GLY B 54 1 7 HELIX 20 AC2 HIS B 57 GLN B 60 5 4 HELIX 21 AC3 ILE B 65 ILE B 69 1 5 HELIX 22 AC4 GLY B 118 ALA B 123 1 6 HELIX 23 AC5 SER B 128 ALA B 147 1 20 HELIX 24 AC6 ARG B 152 TYR B 155 5 4 HELIX 25 AC7 GLU B 164 ASP B 186 1 23 HELIX 26 AC8 ASP B 188 VAL B 192 5 5 HELIX 27 AC9 ASP B 208 LYS B 222 1 15 HELIX 28 AD1 ASN B 265 SER B 271 1 7 HELIX 29 AD2 THR B 315 ARG B 335 1 21 HELIX 30 AD3 GLY B 369 GLY B 388 1 20 HELIX 31 AD4 GLY B 388 LYS B 395 1 8 SHEET 1 AA1 5 ILE A 74 LYS A 78 0 SHEET 2 AA1 5 ASP A 32 ASN A 37 1 N LEU A 35 O VAL A 77 SHEET 3 AA1 5 SER A 5 LEU A 9 1 N ILE A 6 O ASP A 32 SHEET 4 AA1 5 TYR A 102 VAL A 105 1 O VAL A 104 N VAL A 7 SHEET 5 AA1 5 ILE A 294 ILE A 296 1 O PHE A 295 N VAL A 105 SHEET 1 AA2 2 TYR A 41 TYR A 43 0 SHEET 2 AA2 2 ARG A 62 GLY A 64 -1 O VAL A 63 N HIS A 42 SHEET 1 AA3 3 VAL A 81 ASP A 85 0 SHEET 2 AA3 3 LYS A 90 LEU A 93 -1 O THR A 92 N VAL A 82 SHEET 3 AA3 3 GLU A 97 HIS A 99 -1 O LEU A 98 N VAL A 91 SHEET 1 AA4 2 SER A 109 PRO A 111 0 SHEET 2 AA4 2 VAL A 262 GLY A 264 -1 O ARG A 263 N GLU A 110 SHEET 1 AA5 4 VAL A 224 ILE A 228 0 SHEET 2 AA5 4 ARG A 193 GLU A 198 1 N ASN A 196 O GLU A 225 SHEET 3 AA5 4 THR A 157 GLY A 161 1 N VAL A 160 O ILE A 195 SHEET 4 AA5 4 THR A 255 TRP A 258 1 O VAL A 257 N VAL A 159 SHEET 1 AA6 3 ILE A 232 CYS A 235 0 SHEET 2 AA6 3 GLY A 239 VAL A 244 -1 O VAL A 241 N ARG A 234 SHEET 3 AA6 3 GLU A 247 LYS A 252 -1 O ILE A 251 N VAL A 240 SHEET 1 AA7 2 ILE A 280 LYS A 281 0 SHEET 2 AA7 2 ALA A 301 LEU A 302 1 O LEU A 302 N ILE A 280 SHEET 1 AA8 3 VAL A 350 SER A 352 0 SHEET 2 AA8 3 ALA A 358 GLY A 360 -1 O ILE A 359 N ALA A 351 SHEET 3 AA8 3 VAL A 367 TYR A 368 -1 O VAL A 367 N GLY A 360 SHEET 1 AA9 5 ILE B 74 LYS B 78 0 SHEET 2 AA9 5 ASP B 32 ASN B 37 1 N LEU B 35 O VAL B 77 SHEET 3 AA9 5 SER B 5 LEU B 9 1 N ILE B 6 O ASP B 32 SHEET 4 AA9 5 TYR B 102 VAL B 105 1 O VAL B 104 N LEU B 9 SHEET 5 AA9 5 ILE B 294 ILE B 296 1 O PHE B 295 N LEU B 103 SHEET 1 AB1 2 TYR B 41 TYR B 43 0 SHEET 2 AB1 2 ARG B 62 GLY B 64 -1 O VAL B 63 N HIS B 42 SHEET 1 AB2 3 VAL B 81 ASP B 85 0 SHEET 2 AB2 3 LYS B 90 LEU B 93 -1 O LYS B 90 N ASP B 85 SHEET 3 AB2 3 GLU B 97 HIS B 99 -1 O LEU B 98 N VAL B 91 SHEET 1 AB3 2 SER B 109 PRO B 111 0 SHEET 2 AB3 2 VAL B 262 GLY B 264 -1 O ARG B 263 N GLU B 110 SHEET 1 AB4 4 VAL B 224 ILE B 228 0 SHEET 2 AB4 4 ARG B 193 GLU B 198 1 N ASN B 196 O LYS B 227 SHEET 3 AB4 4 THR B 157 GLY B 161 1 N VAL B 160 O ILE B 195 SHEET 4 AB4 4 THR B 255 TRP B 258 1 O VAL B 257 N VAL B 159 SHEET 1 AB5 3 ILE B 232 CYS B 235 0 SHEET 2 AB5 3 VAL B 240 VAL B 244 -1 O VAL B 241 N LYS B 233 SHEET 3 AB5 3 GLU B 247 ILE B 251 -1 O ILE B 251 N VAL B 240 SHEET 1 AB6 2 ILE B 280 LYS B 281 0 SHEET 2 AB6 2 ALA B 301 LEU B 302 1 O LEU B 302 N ILE B 280 SHEET 1 AB7 3 VAL B 350 SER B 352 0 SHEET 2 AB7 3 ALA B 358 VAL B 362 -1 O ILE B 359 N ALA B 351 SHEET 3 AB7 3 ARG B 365 TYR B 368 -1 O VAL B 367 N GLY B 360 CISPEP 1 LYS A 3 PRO A 4 0 -10.34 SITE 1 AC1 24 GLY A 10 GLY A 12 TYR A 13 ASN A 37 SITE 2 AC1 24 LYS A 38 TYR A 43 THR A 45 THR A 46 SITE 3 AC1 24 ASP A 79 THR A 80 VAL A 81 LEU A 107 SITE 4 AC1 24 GLY A 108 ILE A 126 PHE A 165 THR A 166 SITE 5 AC1 24 ASN A 265 ILE A 267 GLY A 298 ASP A 299 SITE 6 AC1 24 THR A 315 ALA A 316 GLN A 317 LYS A 376 SITE 1 AC2 27 GLY B 10 GLY B 12 TYR B 13 GLY B 14 SITE 2 AC2 27 ASN B 37 LYS B 38 ASN B 39 TYR B 43 SITE 3 AC2 27 THR B 45 THR B 46 HIS B 49 VAL B 81 SITE 4 AC2 27 LEU B 107 GLY B 108 ILE B 126 PHE B 165 SITE 5 AC2 27 THR B 166 ASN B 265 ILE B 267 GLY B 298 SITE 6 AC2 27 ASP B 299 PRO B 314 THR B 315 ALA B 316 SITE 7 AC2 27 GLN B 317 THR B 349 LYS B 376 CRYST1 93.098 93.098 248.483 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010741 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004024 0.00000