data_5KMZ # _entry.id 5KMZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5KMZ pdb_00005kmz 10.2210/pdb5kmz/pdb WWPDB D_1000222474 ? ? BMRB 25777 ? 10.13018/BMR25777 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-10-12 2 'Structure model' 1 1 2017-09-20 3 'Structure model' 1 2 2019-11-27 4 'Structure model' 1 3 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Structure summary' 4 3 'Structure model' 'Author supporting evidence' 5 3 'Structure model' 'Data collection' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' entity 3 2 'Structure model' pdbx_audit_support 4 3 'Structure model' pdbx_audit_support 5 3 'Structure model' pdbx_nmr_software 6 3 'Structure model' pdbx_nmr_spectrometer 7 4 'Structure model' chem_comp_atom 8 4 'Structure model' chem_comp_bond 9 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_id_CSD' 2 2 'Structure model' '_entity.pdbx_number_of_molecules' 3 2 'Structure model' '_pdbx_audit_support.funding_organization' 4 3 'Structure model' '_pdbx_audit_support.funding_organization' 5 3 'Structure model' '_pdbx_nmr_software.name' 6 3 'Structure model' '_pdbx_nmr_spectrometer.model' 7 4 'Structure model' '_database_2.pdbx_DOI' 8 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2016-10-12 _pdbx_database_PDB_obs_spr.pdb_id 5KMZ _pdbx_database_PDB_obs_spr.replace_pdb_id 2N6Q _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5KMZ _pdbx_database_status.recvd_initial_deposition_date 2016-06-27 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details . _pdbx_database_related.db_id 25777 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cash, D.D.' 1 'Feigon, J.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Science _citation.journal_id_ASTM SCIEAS _citation.journal_id_CSD 0038 _citation.journal_id_ISSN 1095-9203 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 350 _citation.language ? _citation.page_first aab4070 _citation.page_last aab4070 _citation.title 'Structure of Tetrahymena telomerase reveals previously unknown subunits, functions, and interactions.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/science.aab4070 _citation.pdbx_database_id_PubMed 26472759 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jiang, J.' 1 ? primary 'Chan, H.' 2 ? primary 'Cash, D.D.' 3 ? primary 'Miracco, E.J.' 4 ? primary 'Ogorzalek Loo, R.R.' 5 ? primary 'Upton, H.E.' 6 ? primary 'Cascio, D.' 7 ? primary ;O'Brien Johnson, R. ; 8 ? primary 'Collins, K.' 9 ? primary 'Loo, J.A.' 10 ? primary 'Zhou, Z.H.' 11 ? primary 'Feigon, J.' 12 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Telomerase RNA pseudoknot' _entity.formula_weight 9888.918 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code AACCUUCACCAAUUAGGUUCAAAUAAGUGGU _entity_poly.pdbx_seq_one_letter_code_can AACCUUCACCAAUUAGGUUCAAAUAAGUGGU _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 A n 1 2 A n 1 3 C n 1 4 C n 1 5 U n 1 6 U n 1 7 C n 1 8 A n 1 9 C n 1 10 C n 1 11 A n 1 12 A n 1 13 U n 1 14 U n 1 15 A n 1 16 G n 1 17 G n 1 18 U n 1 19 U n 1 20 C n 1 21 A n 1 22 A n 1 23 A n 1 24 U n 1 25 A n 1 26 A n 1 27 G n 1 28 U n 1 29 G n 1 30 G n 1 31 U n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 31 _pdbx_entity_src_syn.organism_scientific 'Tetrahymena thermophila' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 5911 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 A 1 2 2 A A A . n A 1 2 A 2 3 3 A A A . n A 1 3 C 3 4 4 C C A . n A 1 4 C 4 5 5 C C A . n A 1 5 U 5 6 6 U U A . n A 1 6 U 6 7 7 U U A . n A 1 7 C 7 8 8 C C A . n A 1 8 A 8 9 9 A A A . n A 1 9 C 9 10 10 C C A . n A 1 10 C 10 11 11 C C A . n A 1 11 A 11 12 12 A A A . n A 1 12 A 12 13 13 A A A . n A 1 13 U 13 14 14 U U A . n A 1 14 U 14 15 15 U U A . n A 1 15 A 15 16 16 A A A . n A 1 16 G 16 17 17 G G A . n A 1 17 G 17 18 18 G G A . n A 1 18 U 18 19 19 U U A . n A 1 19 U 19 20 20 U U A . n A 1 20 C 20 21 21 C C A . n A 1 21 A 21 22 22 A A A . n A 1 22 A 22 23 23 A A A . n A 1 23 A 23 24 24 A A A . n A 1 24 U 24 25 25 U U A . n A 1 25 A 25 26 26 A A A . n A 1 26 A 26 27 27 A A A . n A 1 27 G 27 28 28 G G A . n A 1 28 U 28 29 29 U U A . n A 1 29 G 29 30 30 G G A . n A 1 30 G 30 31 31 G G A . n A 1 31 U 31 32 32 U U A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5KMZ _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5KMZ _struct.title 'Solution NMR structure of Tetrahymena telomerase RNA pseudoknot' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5KMZ _struct_keywords.text 'telomerase, RNA, pseudoknot, triplex' _struct_keywords.pdbx_keywords RNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5KMZ _struct_ref.pdbx_db_accession 5KMZ _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5KMZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 31 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5KMZ _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 32 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 32 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 5110 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A A 1 N1 ? ? ? 1_555 A U 19 N3 ? ? A A 2 A U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A A 1 N6 ? ? ? 1_555 A U 19 O4 ? ? A A 2 A U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A A 2 N1 ? ? ? 1_555 A U 18 N3 ? ? A A 3 A U 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 2 N6 ? ? ? 1_555 A U 18 O4 ? ? A A 3 A U 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 17 N1 ? ? A C 4 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 17 O6 ? ? A C 4 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 17 N2 ? ? A C 4 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 O2 ? ? ? 1_555 A A 22 N6 ? ? A C 4 A A 23 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 16 N1 ? ? A C 5 A G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 16 O6 ? ? A C 5 A G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 16 N2 ? ? A C 5 A G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 4 O2 ? ? ? 1_555 A A 23 N6 ? ? A C 5 A A 24 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog13 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 26 N7 ? ? A U 7 A A 27 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog14 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 26 N6 ? ? A U 7 A A 27 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog15 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 27 N1 ? ? A C 8 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 27 O6 ? ? A C 8 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 27 N2 ? ? A C 8 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 8 N1 ? ? ? 1_555 A U 31 N3 ? ? A A 9 A U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 8 N6 ? ? ? 1_555 A U 31 O4 ? ? A A 9 A U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 9 N3 ? ? ? 1_555 A G 30 N1 ? ? A C 10 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 30 O6 ? ? A C 10 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 9 O2 ? ? ? 1_555 A G 30 N2 ? ? A C 10 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 11 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 11 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 11 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A A 11 N1 ? ? ? 1_555 A U 28 N3 ? ? A A 12 A U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A A 11 N6 ? ? ? 1_555 A U 28 O4 ? ? A A 12 A U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A A 12 N6 ? ? ? 1_555 A G 27 O6 ? ? A A 13 A G 28 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog29 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 26 N1 ? ? A U 14 A A 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 13 O4 ? ? ? 1_555 A A 26 N6 ? ? A U 14 A A 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 14 N3 ? ? ? 1_555 A A 25 N1 ? ? A U 15 A A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 14 O4 ? ? ? 1_555 A A 25 N6 ? ? A U 15 A A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A A 15 N1 ? ? ? 1_555 A U 24 N3 ? ? A A 16 A U 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A A 15 N6 ? ? ? 1_555 A U 24 O4 ? ? A A 16 A U 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 16 N2 ? ? ? 1_555 A U 24 O2 ? ? A G 17 A U 25 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog36 hydrog ? ? A U 18 O2 ? ? ? 1_555 A C 20 N4 ? ? A U 19 A C 21 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 6 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 U _pdbx_validate_rmsd_angle.auth_seq_id_1 7 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 U _pdbx_validate_rmsd_angle.auth_seq_id_2 7 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "C4'" _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 U _pdbx_validate_rmsd_angle.auth_seq_id_3 7 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 105.24 _pdbx_validate_rmsd_angle.angle_target_value 109.70 _pdbx_validate_rmsd_angle.angle_deviation -4.46 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.70 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 C A 8 ? ? 0.068 'SIDE CHAIN' 2 1 A A 23 ? ? 0.061 'SIDE CHAIN' 3 1 A A 24 ? ? 0.080 'SIDE CHAIN' 4 2 C A 8 ? ? 0.065 'SIDE CHAIN' 5 2 A A 12 ? ? 0.050 'SIDE CHAIN' 6 2 A A 23 ? ? 0.050 'SIDE CHAIN' 7 2 A A 24 ? ? 0.088 'SIDE CHAIN' 8 3 C A 8 ? ? 0.066 'SIDE CHAIN' 9 3 A A 23 ? ? 0.052 'SIDE CHAIN' 10 3 A A 24 ? ? 0.089 'SIDE CHAIN' 11 4 C A 8 ? ? 0.066 'SIDE CHAIN' 12 4 A A 12 ? ? 0.050 'SIDE CHAIN' 13 4 A A 23 ? ? 0.049 'SIDE CHAIN' 14 4 A A 24 ? ? 0.082 'SIDE CHAIN' 15 5 C A 8 ? ? 0.067 'SIDE CHAIN' 16 5 A A 23 ? ? 0.052 'SIDE CHAIN' 17 5 A A 24 ? ? 0.095 'SIDE CHAIN' 18 6 C A 8 ? ? 0.062 'SIDE CHAIN' 19 6 A A 12 ? ? 0.049 'SIDE CHAIN' 20 6 A A 24 ? ? 0.083 'SIDE CHAIN' 21 7 C A 8 ? ? 0.067 'SIDE CHAIN' 22 7 A A 12 ? ? 0.048 'SIDE CHAIN' 23 7 A A 23 ? ? 0.064 'SIDE CHAIN' 24 7 A A 24 ? ? 0.092 'SIDE CHAIN' 25 8 C A 8 ? ? 0.060 'SIDE CHAIN' 26 8 A A 24 ? ? 0.094 'SIDE CHAIN' 27 9 C A 8 ? ? 0.069 'SIDE CHAIN' 28 9 A A 12 ? ? 0.049 'SIDE CHAIN' 29 9 A A 23 ? ? 0.050 'SIDE CHAIN' 30 9 A A 24 ? ? 0.088 'SIDE CHAIN' 31 10 C A 8 ? ? 0.059 'SIDE CHAIN' 32 10 A A 23 ? ? 0.057 'SIDE CHAIN' 33 10 A A 24 ? ? 0.087 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 5KMZ _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 5KMZ _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '10 mM sodium phosphate, 50 mM potassium chloride, 1 mM RNA (31-MER), 90% H2O/10% D2O' '90% H2O/10% D2O' Unlabel_H2O solution ? 2 '10 mM sodium phosphate, 50 mM potassium chloride, 1 mM RNA (31-MER), 100% D2O' '100% D2O' Unlabel_D2O solution ? 3 '10 mM sodium phosphate, 50 mM potassium chloride, 1 mM [U-13C; U-15N]-Ade,Ura RNA (31-MER), 90% H2O/10% D2O' '90% H2O/10% D2O' AU_label solution ? 4 '10 mM sodium phosphate, 50 mM potassium chloride, 1 mM [U-13C; U-15N]-Gua, Cyt RNA (31-MER), 90% H2O/10% D2O' '90% H2O/10% D2O' GC_label solution ? 5 '10 mM sodium phosphate, 50 mM potassium chloride, 1 mM [U-13C; U-15N]-Ade, Ura, Cyt, Gua RNA (31-MER), 90% H2O/10% D2O' '90% H2O/10% D2O' AUGC_label solution ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'sodium phosphate' 10 ? mM 'natural abundance' 1 'potassium chloride' 50 ? mM 'natural abundance' 1 'RNA (31-MER)' 1 ? mM 'natural abundance' 2 'sodium phosphate' 10 ? mM 'natural abundance' 2 'potassium chloride' 50 ? mM 'natural abundance' 2 'RNA (31-MER)' 1 ? mM 'natural abundance' 3 'sodium phosphate' 10 ? mM 'natural abundance' 3 'potassium chloride' 50 ? mM 'natural abundance' 3 'RNA (31-MER)' 1 ? mM '[U-13C; U-15N]-Ade,Ura' 4 'sodium phosphate' 10 ? mM 'natural abundance' 4 'potassium chloride' 50 ? mM 'natural abundance' 4 'RNA (31-MER)' 1 ? mM '[U-13C; U-15N]-Gua, Cyt' 5 'sodium phosphate' 10 ? mM 'natural abundance' 5 'potassium chloride' 50 ? mM 'natural abundance' 5 'RNA (31-MER)' 1 ? mM '[U-13C; U-15N]-Ade, Ura, Cyt, Gua' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 283 _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.3 _pdbx_nmr_exptl_sample_conditions.ionic_strength 50 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label condition_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D imino NOESY' 1 isotropic 2 1 2 '2D D2O NOESY' 1 isotropic 3 1 2 '2D TOCSY' 1 isotropic 4 1 4 '2D HCCH-COSY, 3D HCCH-TOCSY, 2D filtered/edited NOESY, 2D 1H-13C HSQC, 2D 1H-15N HSQC, jNN-COSY' 1 isotropic 5 1 3 '2D HCCH-COSY, 3D HCCH-TOCSY, 2D filtered/edited NOESY, 2D 1H-13C HSQC, 2D 1H-15N HSQC, jNN-COSY' 1 isotropic 6 1 5 2D-HSQC-TROSY 1 isotropic # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement 'X-PLOR NIH' 2.42 'Schwieters, Kuszewski, Tjandra and Clore' 2 'structure calculation' 'X-PLOR NIH' 2.42 'Schwieters, Kuszewski, Tjandra and Clore' 3 'chemical shift assignment' Sparky ? Goddard 4 'peak picking' Sparky ? Goddard # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5KMZ 'double helix' 5KMZ 'a-form double helix' 5KMZ 'bulge loop' 5KMZ 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 1 1_555 A U 19 1_555 0.664 -0.036 0.098 -5.026 1.408 2.679 1 A_A2:U20_A A 2 ? A 20 ? 20 1 1 A A 2 1_555 A U 18 1_555 0.743 -0.042 -0.249 -6.362 -0.932 2.538 2 A_A3:U19_A A 3 ? A 19 ? 20 1 1 A C 3 1_555 A G 17 1_555 -0.312 0.028 0.235 -4.090 -7.024 3.792 3 A_C4:G18_A A 4 ? A 18 ? 19 1 1 A C 4 1_555 A G 16 1_555 0.756 -0.049 -0.129 3.565 -4.652 2.921 4 A_C5:G17_A A 5 ? A 17 ? 19 1 1 A U 24 1_555 A A 15 1_555 0.721 -0.159 -0.634 10.076 -3.477 2.665 5 A_U25:A16_A A 25 ? A 16 ? 20 1 1 A A 25 1_555 A U 14 1_555 0.778 -0.153 0.292 2.205 -10.625 0.933 6 A_A26:U15_A A 26 ? A 15 ? 20 1 1 A A 26 1_555 A U 13 1_555 -0.462 -0.072 -0.297 -2.266 -7.250 5.931 7 A_A27:U14_A A 27 ? A 14 ? 20 1 1 A G 27 1_555 A C 7 1_555 -1.109 -0.432 -0.332 11.692 -4.741 6.859 8 A_G28:C8_A A 28 ? A 8 ? 19 1 1 A U 28 1_555 A A 11 1_555 0.562 -0.161 -0.365 1.583 -10.383 -9.906 9 A_U29:A12_A A 29 ? A 12 ? 20 1 1 A G 29 1_555 A C 10 1_555 -0.659 0.012 -0.150 -5.393 -13.903 -0.804 10 A_G30:C11_A A 30 ? A 11 ? 19 1 1 A G 30 1_555 A C 9 1_555 0.564 0.166 -0.151 -6.254 -7.508 -3.166 11 A_G31:C10_A A 31 ? A 10 ? 19 1 1 A U 31 1_555 A A 8 1_555 -1.196 -0.114 0.060 1.194 -2.107 -5.113 12 A_U32:A9_A A 32 ? A 9 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 1 1_555 A U 19 1_555 A A 2 1_555 A U 18 1_555 0.135 -0.868 4.144 2.607 0.343 28.421 -1.860 0.478 4.129 0.697 -5.296 28.540 1 AA_A2A3:U19U20_AA A 2 ? A 20 ? A 3 ? A 19 ? 1 A A 2 1_555 A U 18 1_555 A C 3 1_555 A G 17 1_555 -0.146 -1.597 3.445 -3.343 14.393 23.255 -6.627 -0.452 2.115 31.906 7.410 27.498 2 AA_A3C4:G18U19_AA A 3 ? A 19 ? A 4 ? A 18 ? 1 A C 3 1_555 A G 17 1_555 A C 4 1_555 A G 16 1_555 0.202 -0.896 3.352 2.714 4.250 29.162 -2.661 0.183 3.197 8.362 -5.339 29.586 3 AA_C4C5:G17G18_AA A 4 ? A 18 ? A 5 ? A 17 ? 1 A C 4 1_555 A G 16 1_555 A U 24 1_555 A A 15 1_555 -0.864 -1.049 2.798 2.225 14.224 36.607 -2.908 1.497 2.202 21.645 -3.386 39.246 4 AA_C5U25:A16G17_AA A 5 ? A 17 ? A 25 ? A 16 ? 1 A U 24 1_555 A A 15 1_555 A A 25 1_555 A U 14 1_555 -0.339 -1.324 3.529 -1.236 15.496 33.422 -4.209 0.369 2.686 25.313 2.019 36.767 5 AA_U25A26:U15A16_AA A 25 ? A 16 ? A 26 ? A 15 ? 1 A A 25 1_555 A U 14 1_555 A A 26 1_555 A U 13 1_555 0.284 -1.840 3.233 0.974 5.615 26.353 -5.287 -0.378 2.796 12.136 -2.106 26.951 6 AA_A26A27:U14U15_AA A 26 ? A 15 ? A 27 ? A 14 ? 1 A A 26 1_555 A U 13 1_555 A G 27 1_555 A C 7 1_555 -1.907 -3.200 2.622 -162.589 61.116 12.782 -2.165 -0.541 0.947 31.543 83.916 173.735 7 AA_A27G28:C8U14_AA A 27 ? A 14 ? A 28 ? A 8 ? 1 A G 27 1_555 A C 7 1_555 A U 28 1_555 A A 11 1_555 -0.271 -4.660 -3.111 93.147 -139.323 112.167 -2.793 -0.171 -0.517 -70.534 -47.157 173.086 8 AA_G28U29:A12C8_AA A 28 ? A 8 ? A 29 ? A 12 ? 1 A U 28 1_555 A A 11 1_555 A G 29 1_555 A C 10 1_555 0.676 -1.033 3.375 1.966 30.435 32.711 -4.005 -0.723 1.854 43.980 -2.840 44.437 9 AA_U29G30:C11A12_AA A 29 ? A 12 ? A 30 ? A 11 ? 1 A G 29 1_555 A C 10 1_555 A G 30 1_555 A C 9 1_555 -0.188 -0.927 3.039 -1.160 15.112 38.665 -2.736 0.156 2.525 21.830 1.676 41.424 10 AA_G30G31:C10C11_AA A 30 ? A 11 ? A 31 ? A 10 ? 1 A G 30 1_555 A C 9 1_555 A U 31 1_555 A A 8 1_555 -0.365 -1.076 3.176 -4.781 17.765 23.700 -5.322 -0.165 1.955 36.945 9.943 29.921 11 AA_G31U32:A9C10_AA A 31 ? A 10 ? A 32 ? A 9 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM048123 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM007185 2 'National Science Foundation (NSF, United States)' 'United States' MCB1022379 3 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AVANCE ? Bruker 800 ? 2 DRX ? Bruker 600 ? 3 DRX ? Bruker 500 ? # _atom_sites.entry_id 5KMZ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_