HEADER DE NOVO PROTEIN 28-JUN-16 5KNG TITLE CRYSTAL STRUCTURE OF ANTI-IL-13 DARPIN 6G9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DARPIN 6G9; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALTERNATIVE SCAFFOLD, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.TEPLYAKOV,T.MALIA,G.OBMOLOVA,G.GILLILAND REVDAT 3 27-SEP-23 5KNG 1 REMARK REVDAT 2 11-JAN-17 5KNG 1 JRNL REVDAT 1 14-DEC-16 5KNG 0 JRNL AUTH A.TEPLYAKOV,T.J.MALIA,G.OBMOLOVA,S.A.JACOBS,K.T.O'NEIL, JRNL AUTH 2 G.L.GILLILAND JRNL TITL CONFORMATIONAL FLEXIBILITY OF AN ANTI-IL-13 DARPIN. JRNL REF PROTEIN ENG. DES. SEL. V. 30 31 2017 JRNL REFN ESSN 1741-0134 JRNL PMID 27881684 JRNL DOI 10.1093/PROTEIN/GZW059 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 152821 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3121 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 11208 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 211 REMARK 3 BIN FREE R VALUE : 0.2440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4665 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 699 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.048 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.050 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.800 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4712 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6411 ; 1.088 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 621 ; 4.879 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 211 ;26.280 ;25.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 734 ;11.142 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;17.294 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 760 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3579 ; 0.001 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3093 ; 1.862 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4892 ; 2.958 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1619 ;24.778 ;88.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1519 ;22.861 ;88.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KNG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222477. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 156050 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.46900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2J8S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4 M NH4H2PO4, PH 4.60, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.04000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.73591 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 68.81000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 48.04000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 27.73591 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.81000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 48.04000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 27.73591 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.81000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.47181 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 137.62000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 55.47181 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 137.62000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 55.47181 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 137.62000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 377 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 409 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 GLY A 11 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 MET C 1 REMARK 465 ARG C 2 REMARK 465 GLY C 3 REMARK 465 SER C 4 REMARK 465 HIS C 5 REMARK 465 HIS C 6 REMARK 465 HIS C 7 REMARK 465 HIS C 8 REMARK 465 HIS C 9 REMARK 465 HIS C 10 REMARK 465 GLY C 11 REMARK 465 MET D 1 REMARK 465 ARG D 2 REMARK 465 GLY D 3 REMARK 465 SER D 4 REMARK 465 HIS D 5 REMARK 465 HIS D 6 REMARK 465 HIS D 7 REMARK 465 HIS D 8 REMARK 465 HIS D 9 REMARK 465 HIS D 10 REMARK 465 GLY D 11 REMARK 465 SER D 12 REMARK 465 ASP D 13 REMARK 465 LEU D 14 REMARK 465 ASP D 15 REMARK 465 ALA D 35 REMARK 465 ASN D 36 REMARK 465 GLY D 37 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER C 12 OG REMARK 470 LYS C 16 CD CE NZ REMARK 470 LYS C 144 CD CE NZ REMARK 470 GLU C 159 CD OE1 OE2 REMARK 470 GLU C 163 CD OE1 OE2 REMARK 470 LYS C 167 CD CE NZ REMARK 470 LYS D 16 CG CD CE NZ REMARK 470 LYS D 17 CG CD CE NZ REMARK 470 GLU D 20 CG CD OE1 OE2 REMARK 470 ASP D 28 CG OD1 OD2 REMARK 470 ARG D 31 CG CD NE CZ NH1 NH2 REMARK 470 ILE D 32 CG1 CG2 CD1 REMARK 470 ASN D 41 CG OD1 ND2 REMARK 470 LYS D 101 CD CE NZ REMARK 470 LYS D 144 CD CE NZ REMARK 470 GLU D 163 CG CD OE1 OE2 REMARK 470 GLN D 166 CG CD OE1 NE2 REMARK 470 LYS D 167 CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 13 CG OD1 OD2 REMARK 480 LYS A 101 CD CE NZ REMARK 480 GLU A 159 CD OE1 OE2 REMARK 480 GLU A 163 CD OE1 OE2 REMARK 480 GLN A 166 CG CD OE1 NE2 REMARK 480 LYS B 16 CD CE NZ REMARK 480 GLU B 159 CD OE1 OE2 REMARK 480 GLU B 163 CD OE1 OE2 REMARK 480 GLN B 166 CG CD OE1 NE2 REMARK 480 GLN D 26 CD OE1 NE2 REMARK 480 GLU D 29 CD OE1 OE2 REMARK 480 GLU D 159 CD OE1 OE2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 C 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KNH RELATED DB: PDB DBREF 5KNG A 1 169 PDB 5KNG 5KNG 1 169 DBREF 5KNG B 1 169 PDB 5KNG 5KNG 1 169 DBREF 5KNG C 1 169 PDB 5KNG 5KNG 1 169 DBREF 5KNG D 1 169 PDB 5KNG 5KNG 1 169 SEQRES 1 A 169 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ASP SEQRES 2 A 169 LEU ASP LYS LYS LEU LEU GLU ALA ALA ARG ALA GLY GLN SEQRES 3 A 169 ASP ASP GLU VAL ARG ILE LEU MET ALA ASN GLY ALA ASP SEQRES 4 A 169 VAL ASN ALA ARG ASP SER TYR GLY SER THR PRO LEU HIS SEQRES 5 A 169 LEU ALA ALA ARG GLU GLY HIS LEU GLU ILE VAL GLU VAL SEQRES 6 A 169 LEU LEU LYS TYR GLY ALA ASP VAL ASN ALA ALA ASP PHE SEQRES 7 A 169 ILE GLY ASP THR PRO LEU HIS LEU ALA ALA TYR ARG GLY SEQRES 8 A 169 HIS LEU GLU ILE VAL GLU VAL LEU LEU LYS TYR GLY ALA SEQRES 9 A 169 ASP VAL ASN ALA SER ASP ILE THR GLY GLU THR PRO LEU SEQRES 10 A 169 HIS LEU ALA ALA GLN ILE GLY HIS LEU GLU ILE VAL GLU SEQRES 11 A 169 VAL LEU LEU LYS HIS GLY ALA ASP VAL ASN ALA GLN ASP SEQRES 12 A 169 LYS PHE GLY LYS THR PRO ALA ASP ILE ALA ALA ASP ASN SEQRES 13 A 169 GLY HIS GLU ASP ILE ALA GLU VAL LEU GLN LYS LEU ASN SEQRES 1 B 169 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ASP SEQRES 2 B 169 LEU ASP LYS LYS LEU LEU GLU ALA ALA ARG ALA GLY GLN SEQRES 3 B 169 ASP ASP GLU VAL ARG ILE LEU MET ALA ASN GLY ALA ASP SEQRES 4 B 169 VAL ASN ALA ARG ASP SER TYR GLY SER THR PRO LEU HIS SEQRES 5 B 169 LEU ALA ALA ARG GLU GLY HIS LEU GLU ILE VAL GLU VAL SEQRES 6 B 169 LEU LEU LYS TYR GLY ALA ASP VAL ASN ALA ALA ASP PHE SEQRES 7 B 169 ILE GLY ASP THR PRO LEU HIS LEU ALA ALA TYR ARG GLY SEQRES 8 B 169 HIS LEU GLU ILE VAL GLU VAL LEU LEU LYS TYR GLY ALA SEQRES 9 B 169 ASP VAL ASN ALA SER ASP ILE THR GLY GLU THR PRO LEU SEQRES 10 B 169 HIS LEU ALA ALA GLN ILE GLY HIS LEU GLU ILE VAL GLU SEQRES 11 B 169 VAL LEU LEU LYS HIS GLY ALA ASP VAL ASN ALA GLN ASP SEQRES 12 B 169 LYS PHE GLY LYS THR PRO ALA ASP ILE ALA ALA ASP ASN SEQRES 13 B 169 GLY HIS GLU ASP ILE ALA GLU VAL LEU GLN LYS LEU ASN SEQRES 1 C 169 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ASP SEQRES 2 C 169 LEU ASP LYS LYS LEU LEU GLU ALA ALA ARG ALA GLY GLN SEQRES 3 C 169 ASP ASP GLU VAL ARG ILE LEU MET ALA ASN GLY ALA ASP SEQRES 4 C 169 VAL ASN ALA ARG ASP SER TYR GLY SER THR PRO LEU HIS SEQRES 5 C 169 LEU ALA ALA ARG GLU GLY HIS LEU GLU ILE VAL GLU VAL SEQRES 6 C 169 LEU LEU LYS TYR GLY ALA ASP VAL ASN ALA ALA ASP PHE SEQRES 7 C 169 ILE GLY ASP THR PRO LEU HIS LEU ALA ALA TYR ARG GLY SEQRES 8 C 169 HIS LEU GLU ILE VAL GLU VAL LEU LEU LYS TYR GLY ALA SEQRES 9 C 169 ASP VAL ASN ALA SER ASP ILE THR GLY GLU THR PRO LEU SEQRES 10 C 169 HIS LEU ALA ALA GLN ILE GLY HIS LEU GLU ILE VAL GLU SEQRES 11 C 169 VAL LEU LEU LYS HIS GLY ALA ASP VAL ASN ALA GLN ASP SEQRES 12 C 169 LYS PHE GLY LYS THR PRO ALA ASP ILE ALA ALA ASP ASN SEQRES 13 C 169 GLY HIS GLU ASP ILE ALA GLU VAL LEU GLN LYS LEU ASN SEQRES 1 D 169 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ASP SEQRES 2 D 169 LEU ASP LYS LYS LEU LEU GLU ALA ALA ARG ALA GLY GLN SEQRES 3 D 169 ASP ASP GLU VAL ARG ILE LEU MET ALA ASN GLY ALA ASP SEQRES 4 D 169 VAL ASN ALA ARG ASP SER TYR GLY SER THR PRO LEU HIS SEQRES 5 D 169 LEU ALA ALA ARG GLU GLY HIS LEU GLU ILE VAL GLU VAL SEQRES 6 D 169 LEU LEU LYS TYR GLY ALA ASP VAL ASN ALA ALA ASP PHE SEQRES 7 D 169 ILE GLY ASP THR PRO LEU HIS LEU ALA ALA TYR ARG GLY SEQRES 8 D 169 HIS LEU GLU ILE VAL GLU VAL LEU LEU LYS TYR GLY ALA SEQRES 9 D 169 ASP VAL ASN ALA SER ASP ILE THR GLY GLU THR PRO LEU SEQRES 10 D 169 HIS LEU ALA ALA GLN ILE GLY HIS LEU GLU ILE VAL GLU SEQRES 11 D 169 VAL LEU LEU LYS HIS GLY ALA ASP VAL ASN ALA GLN ASP SEQRES 12 D 169 LYS PHE GLY LYS THR PRO ALA ASP ILE ALA ALA ASP ASN SEQRES 13 D 169 GLY HIS GLU ASP ILE ALA GLU VAL LEU GLN LYS LEU ASN HET PO4 A 201 5 HET GOL B 201 6 HET GOL B 202 6 HET PO4 C1001 5 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 PO4 2(O4 P 3-) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 9 HOH *699(H2 O) HELIX 1 AA1 SER A 12 GLY A 25 1 14 HELIX 2 AA2 GLN A 26 ASN A 36 1 11 HELIX 3 AA3 THR A 49 GLY A 58 1 10 HELIX 4 AA4 HIS A 59 TYR A 69 1 11 HELIX 5 AA5 THR A 82 GLY A 91 1 10 HELIX 6 AA6 HIS A 92 TYR A 102 1 11 HELIX 7 AA7 THR A 115 GLY A 124 1 10 HELIX 8 AA8 HIS A 125 HIS A 135 1 11 HELIX 9 AA9 THR A 148 ASN A 156 1 9 HELIX 10 AB1 HIS A 158 LYS A 167 1 10 HELIX 11 AB2 SER B 12 GLY B 25 1 14 HELIX 12 AB3 GLN B 26 ASN B 36 1 11 HELIX 13 AB4 THR B 49 GLY B 58 1 10 HELIX 14 AB5 HIS B 59 TYR B 69 1 11 HELIX 15 AB6 THR B 82 GLY B 91 1 10 HELIX 16 AB7 HIS B 92 TYR B 102 1 11 HELIX 17 AB8 THR B 115 GLY B 124 1 10 HELIX 18 AB9 HIS B 125 HIS B 135 1 11 HELIX 19 AC1 THR B 148 ASN B 156 1 9 HELIX 20 AC2 HIS B 158 LYS B 167 1 10 HELIX 21 AC3 ASP C 13 GLY C 25 1 13 HELIX 22 AC4 GLN C 26 ASN C 36 1 11 HELIX 23 AC5 THR C 49 GLY C 58 1 10 HELIX 24 AC6 HIS C 59 TYR C 69 1 11 HELIX 25 AC7 THR C 82 GLY C 91 1 10 HELIX 26 AC8 HIS C 92 TYR C 102 1 11 HELIX 27 AC9 THR C 115 GLY C 124 1 10 HELIX 28 AD1 HIS C 125 HIS C 135 1 11 HELIX 29 AD2 THR C 148 ASN C 156 1 9 HELIX 30 AD3 HIS C 158 LYS C 167 1 10 HELIX 31 AD4 LYS D 17 GLY D 25 1 9 HELIX 32 AD5 GLN D 26 MET D 34 1 9 HELIX 33 AD6 THR D 49 GLY D 58 1 10 HELIX 34 AD7 HIS D 59 TYR D 69 1 11 HELIX 35 AD8 THR D 82 GLY D 91 1 10 HELIX 36 AD9 HIS D 92 TYR D 102 1 11 HELIX 37 AE1 THR D 115 GLY D 124 1 10 HELIX 38 AE2 HIS D 125 HIS D 135 1 11 HELIX 39 AE3 THR D 148 ASN D 156 1 9 HELIX 40 AE4 HIS D 158 LYS D 167 1 10 SITE 1 AC1 10 ASP A 27 ARG A 31 GLU A 61 ASP A 138 SITE 2 AC1 10 ASN A 140 HOH A 303 HOH A 322 HOH A 339 SITE 3 AC1 10 HOH A 447 LYS B 144 SITE 1 AC2 8 ASP B 81 LEU B 86 TYR B 89 ASP B 110 SITE 2 AC2 8 GOL B 202 HOH B 307 HOH B 374 HOH B 408 SITE 1 AC3 6 ALA A 35 ASP B 110 THR B 112 GLU B 114 SITE 2 AC3 6 GOL B 201 HOH B 379 SITE 1 AC4 10 LYS A 144 ASP B 138 ASN B 140 ASP C 27 SITE 2 AC4 10 ARG C 31 GLU C 61 HOH C1107 HOH C1125 SITE 3 AC4 10 HOH C1138 HOH C1160 CRYST1 96.080 96.080 206.430 90.00 90.00 120.00 H 3 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010408 0.006009 0.000000 0.00000 SCALE2 0.000000 0.012018 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004844 0.00000