HEADER TRANSFERASE 30-JUN-16 5KOC TITLE PAVINE N-METHYLTRANSFERASE IN COMPLEX WITH S-ADENOSYLMETHIONINE PH 7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAVINE N-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PFPAVNMT; COMPND 5 EC: 2.1.1.300; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THALICTRUM FLAVUM SUBSP. GLAUCUM; SOURCE 3 ORGANISM_COMMON: YELLOW MEADOW RUE; SOURCE 4 ORGANISM_TAXID: 150095; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) KEYWDS BENZYLISOQUINOLINE ALKALOID BIOSYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.TORRES,E.HOFFARTH,J.SAVTCHOUK,X.CHEN,J.MORRIS,P.J.FACCHINI, AUTHOR 2 K.K.S.NG REVDAT 6 06-MAR-24 5KOC 1 REMARK REVDAT 5 08-JAN-20 5KOC 1 REMARK REVDAT 4 27-SEP-17 5KOC 1 JRNL REMARK REVDAT 3 16-NOV-16 5KOC 1 JRNL REVDAT 2 14-SEP-16 5KOC 1 JRNL REVDAT 1 07-SEP-16 5KOC 0 JRNL AUTH M.A.TORRES,E.HOFFARTH,L.EUGENIO,J.SAVTCHOUK,X.CHEN, JRNL AUTH 2 J.S.MORRIS,P.J.FACCHINI,K.K.NG JRNL TITL STRUCTURAL AND FUNCTIONAL STUDIES OF PAVINE JRNL TITL 2 N-METHYLTRANSFERASE FROM THALICTRUM FLAVUM REVEAL NOVEL JRNL TITL 3 INSIGHTS INTO SUBSTRATE RECOGNITION AND CATALYTIC MECHANISM. JRNL REF J.BIOL.CHEM. V. 291 23403 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27573242 JRNL DOI 10.1074/JBC.M116.747261 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 32206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1638 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.7829 - 5.2464 0.98 2648 151 0.1767 0.2229 REMARK 3 2 5.2464 - 4.1658 0.97 2561 154 0.1490 0.1978 REMARK 3 3 4.1658 - 3.6397 0.99 2584 139 0.1645 0.2184 REMARK 3 4 3.6397 - 3.3071 0.99 2653 119 0.1795 0.2494 REMARK 3 5 3.3071 - 3.0701 0.96 2493 136 0.1973 0.2772 REMARK 3 6 3.0701 - 2.8892 0.99 2598 127 0.1976 0.2654 REMARK 3 7 2.8892 - 2.7445 0.99 2586 145 0.2035 0.2971 REMARK 3 8 2.7445 - 2.6251 1.00 2591 150 0.2171 0.2832 REMARK 3 9 2.6251 - 2.5241 0.99 2620 128 0.2247 0.3316 REMARK 3 10 2.5241 - 2.4370 0.95 2502 124 0.2300 0.2841 REMARK 3 11 2.4370 - 2.3608 0.98 2534 126 0.2456 0.3466 REMARK 3 12 2.3608 - 2.2933 0.86 2198 139 0.2773 0.3391 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5726 REMARK 3 ANGLE : 1.156 7716 REMARK 3 CHIRALITY : 0.063 836 REMARK 3 PLANARITY : 0.006 957 REMARK 3 DIHEDRAL : 15.844 3378 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KOC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222485. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL, NON FIXED EXIT SLIT REMARK 200 OPTICS : RH COATED COLLIMATING MIRRORS, K REMARK 200 -B FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32206 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 38.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : 0.08700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.81900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX 1.10.1_2155 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: PLATE-LIKE, 0.1X0.1 MM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 340 G/L PENTAERYTHRITOL ETHOXYLATE REMARK 280 (15/4 EO/OH), 50 MM BIS-TRIS-CL PH 7.0, 30 MM AMMONIUM SULFATE, REMARK 280 160 G/L GLYCEROL, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.00250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -40 REMARK 465 ARG A -39 REMARK 465 GLY A -38 REMARK 465 SER A -37 REMARK 465 HIS A -36 REMARK 465 HIS A -35 REMARK 465 HIS A -34 REMARK 465 HIS A -33 REMARK 465 HIS A -32 REMARK 465 HIS A -31 REMARK 465 GLY A -30 REMARK 465 MET A -29 REMARK 465 ALA A -28 REMARK 465 SER A -27 REMARK 465 MET A -26 REMARK 465 THR A -25 REMARK 465 GLY A -24 REMARK 465 GLY A -23 REMARK 465 GLN A -22 REMARK 465 GLN A -21 REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 ARG A -18 REMARK 465 ASP A -17 REMARK 465 LEU A -16 REMARK 465 TYR A -15 REMARK 465 ASP A -14 REMARK 465 ASP A -13 REMARK 465 ASP A -12 REMARK 465 ASP A -11 REMARK 465 LYS A -10 REMARK 465 ASP A -9 REMARK 465 ARG A -8 REMARK 465 TRP A -7 REMARK 465 ILE A -6 REMARK 465 ARG A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 ASP A -2 REMARK 465 LEU A -1 REMARK 465 GLN A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 5 REMARK 465 THR A 6 REMARK 465 LYS A 7 REMARK 465 LYS A 8 REMARK 465 GLU A 9 REMARK 465 ALA A 10 REMARK 465 VAL A 11 REMARK 465 ASP A 72 REMARK 465 THR A 73 REMARK 465 LEU A 74 REMARK 465 ASP A 75 REMARK 465 ALA A 76 REMARK 465 GLU A 77 REMARK 465 SER A 257 REMARK 465 MET B -40 REMARK 465 ARG B -39 REMARK 465 GLY B -38 REMARK 465 SER B -37 REMARK 465 HIS B -36 REMARK 465 HIS B -35 REMARK 465 HIS B -34 REMARK 465 HIS B -33 REMARK 465 HIS B -32 REMARK 465 HIS B -31 REMARK 465 GLY B -30 REMARK 465 MET B -29 REMARK 465 ALA B -28 REMARK 465 SER B -27 REMARK 465 MET B -26 REMARK 465 THR B -25 REMARK 465 GLY B -24 REMARK 465 GLY B -23 REMARK 465 GLN B -22 REMARK 465 GLN B -21 REMARK 465 MET B -20 REMARK 465 GLY B -19 REMARK 465 ARG B -18 REMARK 465 ASP B -17 REMARK 465 LEU B -16 REMARK 465 TYR B -15 REMARK 465 ASP B -14 REMARK 465 ASP B -13 REMARK 465 ASP B -12 REMARK 465 ASP B -11 REMARK 465 LYS B -10 REMARK 465 ASP B -9 REMARK 465 ARG B -8 REMARK 465 TRP B -7 REMARK 465 ILE B -6 REMARK 465 ARG B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 ASP B -2 REMARK 465 LEU B -1 REMARK 465 GLN B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 THR B 3 REMARK 465 LYS B 4 REMARK 465 GLN B 5 REMARK 465 THR B 6 REMARK 465 LYS B 7 REMARK 465 LYS B 8 REMARK 465 GLU B 9 REMARK 465 ALA B 10 REMARK 465 VAL B 11 REMARK 465 ASP B 72 REMARK 465 THR B 73 REMARK 465 LEU B 74 REMARK 465 ASP B 75 REMARK 465 ALA B 76 REMARK 465 GLU B 77 REMARK 465 LEU B 78 REMARK 465 TYR B 79 REMARK 465 SER B 257 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 153 O HOH B 501 1.83 REMARK 500 OE2 GLU B 19 CD LYS B 322 1.98 REMARK 500 O ALA B 12 NZ LYS B 16 2.00 REMARK 500 OD2 ASP A 103 N SER A 105 2.03 REMARK 500 NH1 ARG B 17 OE1 GLU B 22 2.04 REMARK 500 OD2 ASP B 175 O HOH B 502 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 116 CG - SD - CE ANGL. DEV. = -10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 96 61.38 -100.72 REMARK 500 SER A 97 163.21 179.37 REMARK 500 ASP A 103 176.77 175.09 REMARK 500 PHE A 271 55.55 -119.69 REMARK 500 GLU A 345 -74.02 -108.53 REMARK 500 MET A 347 -168.09 -165.63 REMARK 500 LYS B 92 -76.13 -48.67 REMARK 500 THR B 93 125.13 -36.61 REMARK 500 LEU B 94 56.94 -91.08 REMARK 500 SER B 97 163.95 166.63 REMARK 500 ASP B 175 64.68 60.80 REMARK 500 LYS B 208 -61.11 -124.06 REMARK 500 VAL B 236 -51.65 -121.77 REMARK 500 LEU B 244 -78.27 -69.06 REMARK 500 GLU B 345 -73.76 -108.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 92 THR B 93 149.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KN4 RELATED DB: PDB REMARK 900 RELATED ID: 5KOK RELATED DB: PDB REMARK 900 RELATED ID: 5KPC RELATED DB: PDB REMARK 900 RELATED ID: 5KPG RELATED DB: PDB DBREF 5KOC A 1 356 UNP C3SBW0 PNMT_THLFG 1 356 DBREF 5KOC B 1 356 UNP C3SBW0 PNMT_THLFG 1 356 SEQADV 5KOC MET A -40 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ARG A -39 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC GLY A -38 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC SER A -37 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC HIS A -36 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC HIS A -35 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC HIS A -34 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC HIS A -33 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC HIS A -32 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC HIS A -31 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC GLY A -30 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC MET A -29 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ALA A -28 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC SER A -27 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC MET A -26 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC THR A -25 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC GLY A -24 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC GLY A -23 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC GLN A -22 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC GLN A -21 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC MET A -20 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC GLY A -19 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ARG A -18 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ASP A -17 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC LEU A -16 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC TYR A -15 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ASP A -14 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ASP A -13 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ASP A -12 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ASP A -11 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC LYS A -10 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ASP A -9 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ARG A -8 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC TRP A -7 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ILE A -6 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ARG A -5 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC PRO A -4 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ARG A -3 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ASP A -2 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC LEU A -1 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC GLN A 0 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ASP A 224 UNP C3SBW0 TYR 224 CONFLICT SEQADV 5KOC MET B -40 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ARG B -39 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC GLY B -38 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC SER B -37 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC HIS B -36 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC HIS B -35 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC HIS B -34 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC HIS B -33 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC HIS B -32 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC HIS B -31 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC GLY B -30 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC MET B -29 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ALA B -28 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC SER B -27 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC MET B -26 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC THR B -25 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC GLY B -24 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC GLY B -23 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC GLN B -22 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC GLN B -21 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC MET B -20 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC GLY B -19 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ARG B -18 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ASP B -17 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC LEU B -16 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC TYR B -15 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ASP B -14 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ASP B -13 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ASP B -12 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ASP B -11 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC LYS B -10 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ASP B -9 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ARG B -8 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC TRP B -7 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ILE B -6 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ARG B -5 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC PRO B -4 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ARG B -3 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ASP B -2 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC LEU B -1 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC GLN B 0 UNP C3SBW0 EXPRESSION TAG SEQADV 5KOC ASP B 224 UNP C3SBW0 TYR 224 CONFLICT SEQRES 1 A 397 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 A 397 SER MET THR GLY GLY GLN GLN MET GLY ARG ASP LEU TYR SEQRES 3 A 397 ASP ASP ASP ASP LYS ASP ARG TRP ILE ARG PRO ARG ASP SEQRES 4 A 397 LEU GLN MET GLU THR LYS GLN THR LYS LYS GLU ALA VAL SEQRES 5 A 397 ALA ASN LEU ILE LYS ARG ILE GLU HIS GLY GLU VAL SER SEQRES 6 A 397 ASP GLU GLU ILE ARG GLY MET MET LYS ILE GLN VAL GLN SEQRES 7 A 397 LYS ARG LEU LYS TRP GLY TYR LYS PRO THR HIS GLU GLN SEQRES 8 A 397 GLN LEU ALA GLN LEU VAL THR PHE ALA GLN SER LEU LYS SEQRES 9 A 397 GLY MET GLU MET ALA GLU GLU VAL ASP THR LEU ASP ALA SEQRES 10 A 397 GLU LEU TYR GLU ILE PRO LEU PRO PHE LEU HIS ILE MET SEQRES 11 A 397 CYS GLY LYS THR LEU LYS PHE SER PRO GLY TYR PHE LYS SEQRES 12 A 397 ASP GLU SER THR THR LEU ASP GLU SER GLU VAL TYR MET SEQRES 13 A 397 MET ASP LEU TYR CYS GLU ARG ALA GLN ILE LYS ASP GLY SEQRES 14 A 397 GLN SER ILE LEU ASP LEU GLY CYS GLY HIS GLY SER LEU SEQRES 15 A 397 THR LEU HIS VAL ALA GLN LYS TYR ARG GLY CYS LYS VAL SEQRES 16 A 397 THR GLY ILE THR ASN SER VAL SER GLN LYS GLU PHE ILE SEQRES 17 A 397 MET ASP GLN CYS LYS LYS LEU ASP LEU SER ASN VAL GLU SEQRES 18 A 397 ILE ILE LEU GLU ASP VAL THR LYS PHE GLU THR GLU ILE SEQRES 19 A 397 THR TYR ASP ARG ILE PHE ALA VAL ALA LEU ILE GLU HIS SEQRES 20 A 397 MET LYS ASN TYR GLU LEU PHE LEU LYS LYS VAL SER THR SEQRES 21 A 397 TRP ILE ALA GLN ASP GLY LEU LEU PHE VAL GLU HIS HIS SEQRES 22 A 397 CYS HIS LYS VAL PHE ALA TYR GLN TYR GLU PRO LEU ASP SEQRES 23 A 397 GLU ASP ASP TRP TYR THR GLU TYR ILE PHE PRO SER GLY SEQRES 24 A 397 THR LEU VAL MET SER SER SER SER ILE LEU LEU TYR PHE SEQRES 25 A 397 GLN GLU ASP VAL SER VAL VAL ASN HIS TRP THR LEU SER SEQRES 26 A 397 GLY LYS HIS PRO SER LEU GLY PHE LYS GLN TRP LEU LYS SEQRES 27 A 397 ARG LEU ASP ASP ASN ILE ASP GLU VAL LYS GLU ILE PHE SEQRES 28 A 397 GLU SER PHE TYR GLY SER LYS GLU LYS ALA MET LYS PHE SEQRES 29 A 397 ILE THR TYR TRP ARG VAL PHE CYS ILE ALA HIS SER GLN SEQRES 30 A 397 MET TYR SER THR ASN ASN GLY GLU GLU TRP MET LEU SER SEQRES 31 A 397 GLN VAL LEU PHE LYS LYS LYS SEQRES 1 B 397 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 B 397 SER MET THR GLY GLY GLN GLN MET GLY ARG ASP LEU TYR SEQRES 3 B 397 ASP ASP ASP ASP LYS ASP ARG TRP ILE ARG PRO ARG ASP SEQRES 4 B 397 LEU GLN MET GLU THR LYS GLN THR LYS LYS GLU ALA VAL SEQRES 5 B 397 ALA ASN LEU ILE LYS ARG ILE GLU HIS GLY GLU VAL SER SEQRES 6 B 397 ASP GLU GLU ILE ARG GLY MET MET LYS ILE GLN VAL GLN SEQRES 7 B 397 LYS ARG LEU LYS TRP GLY TYR LYS PRO THR HIS GLU GLN SEQRES 8 B 397 GLN LEU ALA GLN LEU VAL THR PHE ALA GLN SER LEU LYS SEQRES 9 B 397 GLY MET GLU MET ALA GLU GLU VAL ASP THR LEU ASP ALA SEQRES 10 B 397 GLU LEU TYR GLU ILE PRO LEU PRO PHE LEU HIS ILE MET SEQRES 11 B 397 CYS GLY LYS THR LEU LYS PHE SER PRO GLY TYR PHE LYS SEQRES 12 B 397 ASP GLU SER THR THR LEU ASP GLU SER GLU VAL TYR MET SEQRES 13 B 397 MET ASP LEU TYR CYS GLU ARG ALA GLN ILE LYS ASP GLY SEQRES 14 B 397 GLN SER ILE LEU ASP LEU GLY CYS GLY HIS GLY SER LEU SEQRES 15 B 397 THR LEU HIS VAL ALA GLN LYS TYR ARG GLY CYS LYS VAL SEQRES 16 B 397 THR GLY ILE THR ASN SER VAL SER GLN LYS GLU PHE ILE SEQRES 17 B 397 MET ASP GLN CYS LYS LYS LEU ASP LEU SER ASN VAL GLU SEQRES 18 B 397 ILE ILE LEU GLU ASP VAL THR LYS PHE GLU THR GLU ILE SEQRES 19 B 397 THR TYR ASP ARG ILE PHE ALA VAL ALA LEU ILE GLU HIS SEQRES 20 B 397 MET LYS ASN TYR GLU LEU PHE LEU LYS LYS VAL SER THR SEQRES 21 B 397 TRP ILE ALA GLN ASP GLY LEU LEU PHE VAL GLU HIS HIS SEQRES 22 B 397 CYS HIS LYS VAL PHE ALA TYR GLN TYR GLU PRO LEU ASP SEQRES 23 B 397 GLU ASP ASP TRP TYR THR GLU TYR ILE PHE PRO SER GLY SEQRES 24 B 397 THR LEU VAL MET SER SER SER SER ILE LEU LEU TYR PHE SEQRES 25 B 397 GLN GLU ASP VAL SER VAL VAL ASN HIS TRP THR LEU SER SEQRES 26 B 397 GLY LYS HIS PRO SER LEU GLY PHE LYS GLN TRP LEU LYS SEQRES 27 B 397 ARG LEU ASP ASP ASN ILE ASP GLU VAL LYS GLU ILE PHE SEQRES 28 B 397 GLU SER PHE TYR GLY SER LYS GLU LYS ALA MET LYS PHE SEQRES 29 B 397 ILE THR TYR TRP ARG VAL PHE CYS ILE ALA HIS SER GLN SEQRES 30 B 397 MET TYR SER THR ASN ASN GLY GLU GLU TRP MET LEU SER SEQRES 31 B 397 GLN VAL LEU PHE LYS LYS LYS HET SAM A 401 27 HET SAM B 401 27 HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 3 SAM 2(C15 H22 N6 O5 S) FORMUL 5 HOH *87(H2 O) HELIX 1 AA1 ALA A 12 HIS A 20 1 9 HELIX 2 AA2 SER A 24 TYR A 44 1 21 HELIX 3 AA3 THR A 47 LYS A 63 1 17 HELIX 4 AA4 PRO A 82 CYS A 90 1 9 HELIX 5 AA5 THR A 107 ALA A 123 1 17 HELIX 6 AA6 GLY A 139 TYR A 149 1 11 HELIX 7 AA7 SER A 160 ASP A 175 1 16 HELIX 8 AA8 LEU A 203 MET A 207 5 5 HELIX 9 AA9 ASN A 209 THR A 219 1 11 HELIX 10 AB1 TRP A 249 PHE A 255 1 7 HELIX 11 AB2 SER A 266 PHE A 271 5 6 HELIX 12 AB3 GLY A 285 ASN A 302 1 18 HELIX 13 AB4 ASN A 302 GLY A 315 1 14 HELIX 14 AB5 SER A 316 GLU A 344 1 29 HELIX 15 AB6 ILE B 15 HIS B 20 1 6 HELIX 16 AB7 SER B 24 TYR B 44 1 21 HELIX 17 AB8 THR B 47 LYS B 63 1 17 HELIX 18 AB9 PRO B 82 CYS B 90 1 9 HELIX 19 AC1 THR B 107 ALA B 123 1 17 HELIX 20 AC2 GLY B 139 TYR B 149 1 11 HELIX 21 AC3 SER B 160 ASP B 175 1 16 HELIX 22 AC4 ASP B 185 PHE B 189 5 5 HELIX 23 AC5 LEU B 203 MET B 207 5 5 HELIX 24 AC6 ASN B 209 THR B 219 1 11 HELIX 25 AC7 ASP B 248 PHE B 255 1 8 HELIX 26 AC8 SER B 266 PHE B 271 5 6 HELIX 27 AC9 GLY B 285 ASN B 302 1 18 HELIX 28 AD1 ASN B 302 GLY B 315 1 14 HELIX 29 AD2 SER B 316 THR B 340 1 25 HELIX 30 AD3 ASN B 341 GLU B 344 5 4 SHEET 1 AA1 7 VAL A 179 LEU A 183 0 SHEET 2 AA1 7 LYS A 153 THR A 158 1 N GLY A 156 O ILE A 182 SHEET 3 AA1 7 SER A 130 LEU A 134 1 N ILE A 131 O THR A 155 SHEET 4 AA1 7 TYR A 195 VAL A 201 1 O PHE A 199 N LEU A 132 SHEET 5 AA1 7 ILE A 221 HIS A 234 1 O PHE A 228 N ILE A 198 SHEET 6 AA1 7 TRP A 346 LYS A 355 -1 O MET A 347 N CYS A 233 SHEET 7 AA1 7 VAL A 275 LEU A 283 -1 N VAL A 278 O LEU A 352 SHEET 1 AA2 2 TYR A 239 GLN A 240 0 SHEET 2 AA2 2 VAL A 261 MET A 262 -1 O MET A 262 N TYR A 239 SHEET 1 AA3 7 VAL B 179 LEU B 183 0 SHEET 2 AA3 7 LYS B 153 THR B 158 1 N GLY B 156 O GLU B 180 SHEET 3 AA3 7 SER B 130 LEU B 134 1 N ILE B 131 O THR B 155 SHEET 4 AA3 7 TYR B 195 VAL B 201 1 O PHE B 199 N LEU B 132 SHEET 5 AA3 7 ILE B 221 HIS B 234 1 O PHE B 228 N ILE B 198 SHEET 6 AA3 7 TRP B 346 LYS B 355 -1 O PHE B 353 N LEU B 227 SHEET 7 AA3 7 VAL B 275 LEU B 283 -1 N VAL B 278 O LEU B 352 SHEET 1 AA4 2 TYR B 239 GLN B 240 0 SHEET 2 AA4 2 VAL B 261 MET B 262 -1 O MET B 262 N TYR B 239 SITE 1 AC1 16 PHE A 96 SER A 97 GLY A 135 GLY A 137 SITE 2 AC1 16 SER A 140 ASN A 159 GLN A 163 GLU A 184 SITE 3 AC1 16 ASP A 185 VAL A 186 VAL A 201 ALA A 202 SITE 4 AC1 16 HIS A 206 HOH A 524 HOH A 537 HOH A 543 SITE 1 AC2 14 PHE B 96 SER B 97 GLY B 135 GLY B 137 SITE 2 AC2 14 ASN B 159 GLN B 163 GLU B 184 ASP B 185 SITE 3 AC2 14 VAL B 186 VAL B 201 ALA B 202 HIS B 206 SITE 4 AC2 14 HOH B 507 HOH B 508 CRYST1 54.572 72.005 96.247 90.00 98.97 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018324 0.000000 0.002892 0.00000 SCALE2 0.000000 0.013888 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010519 0.00000