HEADER STRUCTURAL PROTEIN 02-JUL-16 5KP9 TITLE STRUCTURE OF NANOPARTICLE RELEASED FROM ENVELOPED PROTEIN NANOPARTICLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPN-01*; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: ENVELOPED PROTEIN NANOPARTICLE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA, HUMAN IMMUNODEFICIENCY SOURCE 3 VIRUS TYPE 1 GROUP M SUBTYPE B (ISOLATE BH10); SOURCE 4 ORGANISM_COMMON: HIV-1; SOURCE 5 ORGANISM_TAXID: 2336, 11678; SOURCE 6 STRAIN: ISOLATE BH10; SOURCE 7 GENE: TM_0066, GAG; SOURCE 8 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 9 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM_CELL_LINE: HEK293T KEYWDS PROTEIN DESIGN, ICOSAHEDRAL ASSEMBLIES, CELL TRANSDUCTION, ENVELOPED KEYWDS 2 VIRUSES, VIRUS ASSEMBLY, ENVELOPED PROTEIN, NANOPARTICLE, STRUCTURAL KEYWDS 3 PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR J.VOTTELER,C.OGOHARA,S.YI,Y.HSIA,U.NATTERMAN,D.M.BELNAP,N.P.KING, AUTHOR 2 W.I.SUNDQUIST REVDAT 7 11-DEC-19 5KP9 1 REMARK REVDAT 6 27-NOV-19 5KP9 1 REMARK REVDAT 5 18-JUL-18 5KP9 1 REMARK REVDAT 4 27-SEP-17 5KP9 1 REMARK REVDAT 3 13-SEP-17 5KP9 1 REMARK REVDAT 2 11-JAN-17 5KP9 1 JRNL REVDAT 1 07-DEC-16 5KP9 0 JRNL AUTH J.VOTTELER,C.OGOHARA,S.YI,Y.HSIA,U.NATTERMANN,D.M.BELNAP, JRNL AUTH 2 N.P.KING,W.I.SUNDQUIST JRNL TITL DESIGNED PROTEINS INDUCE THE FORMATION OF JRNL TITL 2 NANOCAGE-CONTAINING EXTRACELLULAR VESICLES. JRNL REF NATURE V. 540 292 2016 JRNL REFN ESSN 1476-4687 JRNL PMID 27919066 JRNL DOI 10.1038/NATURE20607 REMARK 2 REMARK 2 RESOLUTION. 5.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : SCIPION, XMIPP, SERIALEM, CTFFIND, REMARK 3 SCIPION, UCSF CHIMERA, RELION, SCIPION, REMARK 3 RELION, SCIPION, RELION, SCIPION, REMARK 3 RELION, SCIPION REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 5.700 REMARK 3 NUMBER OF PARTICLES : 8573 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 5KP9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222564. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : EPN-01* REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.20 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : 11 SECOND BLOT, 0 MM OFFSET REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TECNAI F20 REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.00 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : 41911 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 2 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 2 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 3 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 3 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 3 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 4 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 4 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 4 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 5 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 5 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 5 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 6 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 6 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 7 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 8 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 8 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 8 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 9 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 9 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 9 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 10 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 10 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 10 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 11 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 11 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 11 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 12 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 12 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 12 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 13 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 13 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 13 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 14 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 14 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 14 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 15 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 15 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 15 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 16 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 16 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 16 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 17 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 17 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 17 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 18 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 18 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 18 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 19 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 19 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 19 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 20 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 20 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 20 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 21 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 21 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 21 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 22 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 22 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 22 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 23 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 23 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 23 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 24 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 24 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 24 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 25 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 25 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 25 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 26 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 26 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 26 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 27 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 27 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 27 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 28 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 28 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 28 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 29 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 29 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 29 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 30 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 30 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 30 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 31 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 31 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 31 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 32 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 32 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 32 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 33 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 33 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 33 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 34 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 34 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 34 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 35 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 35 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 35 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 36 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 36 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 36 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 37 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 37 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 37 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 38 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 38 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 38 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 39 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 39 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 39 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 40 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 40 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 40 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 41 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 41 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 41 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 42 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 42 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 42 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 43 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 43 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 43 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 44 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 44 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 44 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 45 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 45 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 45 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 46 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 46 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 46 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 47 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 47 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 47 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 48 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 48 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 48 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 49 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 49 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 49 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 50 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 50 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 50 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 51 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 51 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 51 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 52 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 52 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 52 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 53 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 53 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 53 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 54 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 54 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 54 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 55 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 55 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 55 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 56 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 56 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 56 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 57 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 57 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 57 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 58 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 58 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 58 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 59 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 59 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 59 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 60 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 60 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 60 -0.809017 0.500000 -0.309017 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -18 REMARK 465 GLY B -17 REMARK 465 ALA B -16 REMARK 465 ARG B -15 REMARK 465 ALA B -14 REMARK 465 SER B -13 REMARK 465 GLY B -12 REMARK 465 SER B -11 REMARK 465 LYS B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 SER B -7 REMARK 465 GLY B -6 REMARK 465 SER B -5 REMARK 465 ASP B -4 REMARK 465 SER B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 THR B 202 REMARK 465 GLU B 203 REMARK 465 GLN B 204 REMARK 465 LYS B 205 REMARK 465 LEU B 206 REMARK 465 ILE B 207 REMARK 465 SER B 208 REMARK 465 GLU B 209 REMARK 465 GLU B 210 REMARK 465 ASP B 211 REMARK 465 LEU B 212 REMARK 465 GLN B 213 REMARK 465 SER B 214 REMARK 465 ARG B 215 REMARK 465 PRO B 216 REMARK 465 GLU B 217 REMARK 465 PRO B 218 REMARK 465 THR B 219 REMARK 465 ALA B 220 REMARK 465 PRO B 221 REMARK 465 PRO B 222 REMARK 465 GLU B 223 REMARK 465 GLU B 224 REMARK 465 SER B 225 REMARK 465 PHE B 226 REMARK 465 ARG B 227 REMARK 465 SER B 228 REMARK 465 GLY B 229 REMARK 465 VAL B 230 REMARK 465 GLU B 231 REMARK 465 THR B 232 REMARK 465 THR B 233 REMARK 465 THR B 234 REMARK 465 PRO B 235 REMARK 465 PRO B 236 REMARK 465 GLN B 237 REMARK 465 LYS B 238 REMARK 465 GLN B 239 REMARK 465 GLU B 240 REMARK 465 PRO B 241 REMARK 465 ILE B 242 REMARK 465 ASP B 243 REMARK 465 LYS B 244 REMARK 465 GLU B 245 REMARK 465 LEU B 246 REMARK 465 TYR B 247 REMARK 465 PRO B 248 REMARK 465 LEU B 249 REMARK 465 THR B 250 REMARK 465 SER B 251 REMARK 465 LEU B 252 REMARK 465 ARG B 253 REMARK 465 SER B 254 REMARK 465 LEU B 255 REMARK 465 PHE B 256 REMARK 465 GLY B 257 REMARK 465 ASN B 258 REMARK 465 ASP B 259 REMARK 465 PRO B 260 REMARK 465 SER B 261 REMARK 465 SER B 262 REMARK 465 GLN B 263 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 0 CB CG CD CE NZ REMARK 470 MET B 1 CB CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N LYS B 0 OE1 GLU B 3 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL B 109 CG1 - CB - CG2 ANGL. DEV. = 13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 9 -7.24 70.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-8278 RELATED DB: EMDB DBREF 5KP9 B -18 -1 PDB 5KP9 5KP9 -18 -1 DBREF 5KP9 B 0 203 UNP Q9WXS1 Q9WXS1_THEMA 2 205 DBREF 5KP9 B 212 263 UNP P03347 GAG_HV1B1 461 512 SEQADV 5KP9 LYS B 24 UNP Q9WXS1 GLU 26 CONFLICT SEQADV 5KP9 LEU B 31 UNP Q9WXS1 GLU 33 CONFLICT SEQADV 5KP9 MET B 59 UNP Q9WXS1 LYS 61 CONFLICT SEQADV 5KP9 VAL B 185 UNP Q9WXS1 ASP 187 CONFLICT SEQADV 5KP9 ALA B 188 UNP Q9WXS1 ARG 190 CONFLICT SEQADV 5KP9 GLN B 204 UNP Q9WXS1 LINKER SEQADV 5KP9 LYS B 205 UNP Q9WXS1 LINKER SEQADV 5KP9 LEU B 206 UNP Q9WXS1 LINKER SEQADV 5KP9 ILE B 207 UNP Q9WXS1 LINKER SEQADV 5KP9 SER B 208 UNP Q9WXS1 LINKER SEQADV 5KP9 GLU B 209 UNP Q9WXS1 LINKER SEQADV 5KP9 GLU B 210 UNP Q9WXS1 LINKER SEQADV 5KP9 ASP B 211 UNP Q9WXS1 LINKER SEQRES 1 B 282 MET GLY ALA ARG ALA SER GLY SER LYS SER GLY SER GLY SEQRES 2 B 282 SER ASP SER GLY SER LYS MET GLU GLU LEU PHE LYS LYS SEQRES 3 B 282 HIS LYS ILE VAL ALA VAL LEU ARG ALA ASN SER VAL GLU SEQRES 4 B 282 GLU ALA LYS LYS LYS ALA LEU ALA VAL PHE LEU GLY GLY SEQRES 5 B 282 VAL HIS LEU ILE GLU ILE THR PHE THR VAL PRO ASP ALA SEQRES 6 B 282 ASP THR VAL ILE LYS GLU LEU SER PHE LEU LYS GLU MET SEQRES 7 B 282 GLY ALA ILE ILE GLY ALA GLY THR VAL THR SER VAL GLU SEQRES 8 B 282 GLN CYS ARG LYS ALA VAL GLU SER GLY ALA GLU PHE ILE SEQRES 9 B 282 VAL SER PRO HIS LEU ASP GLU GLU ILE SER GLN PHE CYS SEQRES 10 B 282 LYS GLU LYS GLY VAL PHE TYR MET PRO GLY VAL MET THR SEQRES 11 B 282 PRO THR GLU LEU VAL LYS ALA MET LYS LEU GLY HIS THR SEQRES 12 B 282 ILE LEU LYS LEU PHE PRO GLY GLU VAL VAL GLY PRO GLN SEQRES 13 B 282 PHE VAL LYS ALA MET LYS GLY PRO PHE PRO ASN VAL LYS SEQRES 14 B 282 PHE VAL PRO THR GLY GLY VAL ASN LEU ASP ASN VAL CYS SEQRES 15 B 282 GLU TRP PHE LYS ALA GLY VAL LEU ALA VAL GLY VAL GLY SEQRES 16 B 282 SER ALA LEU VAL LYS GLY THR PRO VAL GLU VAL ALA GLU SEQRES 17 B 282 LYS ALA LYS ALA PHE VAL GLU LYS ILE ARG GLY CYS THR SEQRES 18 B 282 GLU GLN LYS LEU ILE SER GLU GLU ASP LEU GLN SER ARG SEQRES 19 B 282 PRO GLU PRO THR ALA PRO PRO GLU GLU SER PHE ARG SER SEQRES 20 B 282 GLY VAL GLU THR THR THR PRO PRO GLN LYS GLN GLU PRO SEQRES 21 B 282 ILE ASP LYS GLU LEU TYR PRO LEU THR SER LEU ARG SER SEQRES 22 B 282 LEU PHE GLY ASN ASP PRO SER SER GLN HELIX 1 AA1 LYS B 0 LYS B 9 1 10 HELIX 2 AA2 SER B 18 GLY B 32 1 15 HELIX 3 AA3 ASP B 45 SER B 54 1 10 HELIX 4 AA4 PHE B 55 GLY B 60 5 6 HELIX 5 AA5 SER B 70 SER B 80 1 11 HELIX 6 AA6 ASP B 91 GLY B 102 1 12 HELIX 7 AA7 THR B 111 LEU B 121 1 11 HELIX 8 AA8 PRO B 130 GLY B 144 1 15 HELIX 9 AA9 ASN B 161 GLY B 169 1 9 HELIX 10 AB1 GLY B 176 LYS B 181 1 6 HELIX 11 AB2 THR B 183 GLY B 200 1 18 SHEET 1 AA1 4 ILE B 62 GLY B 66 0 SHEET 2 AA1 4 LEU B 36 THR B 40 1 N ILE B 37 O ILE B 62 SHEET 3 AA1 4 ILE B 10 LEU B 14 1 N ALA B 12 O GLU B 38 SHEET 4 AA1 4 VAL B 173 VAL B 175 1 O VAL B 175 N VAL B 11 SHEET 1 AA2 2 PHE B 84 VAL B 86 0 SHEET 2 AA2 2 PHE B 104 MET B 106 1 O MET B 106 N ILE B 85 SHEET 1 AA3 3 GLY B 108 VAL B 109 0 SHEET 2 AA3 3 ILE B 125 LEU B 128 1 O LYS B 127 N VAL B 109 SHEET 3 AA3 3 LYS B 150 PRO B 153 1 O LYS B 150 N LEU B 126 SSBOND 1 CYS B 163 CYS B 201 1555 1555 2.06 CISPEP 1 PHE B 129 PRO B 130 0 1.25 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000