HEADER TRANSFERASE 05-JUL-16 5KPR TITLE PANK3-AMPPNP-PANTOTHENATE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PANTOTHENATE KINASE 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 12-370; COMPND 5 SYNONYM: HPANK3,PANTOTHENIC ACID KINASE 3; COMPND 6 EC: 2.7.1.33; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PANK3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PANK, SUBSTRATE, COMPLEX, TRANSFERASE, PANTOTHENATE KINASE EXPDTA X-RAY DIFFRACTION AUTHOR S.W.WHITE,M.YUN REVDAT 4 04-OCT-23 5KPR 1 JRNL REMARK LINK REVDAT 3 26-OCT-16 5KPR 1 JRNL REVDAT 2 07-SEP-16 5KPR 1 JRNL REVDAT 1 31-AUG-16 5KPR 0 JRNL AUTH C.SUBRAMANIAN,M.K.YUN,J.YAO,L.K.SHARMA,R.E.LEE,S.W.WHITE, JRNL AUTH 2 S.JACKOWSKI,C.O.ROCK JRNL TITL ALLOSTERIC REGULATION OF MAMMALIAN PANTOTHENATE KINASE. JRNL REF J.BIOL.CHEM. V. 291 22302 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27555321 JRNL DOI 10.1074/JBC.M116.748061 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 34445 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1722 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.3789 - 4.1808 0.99 2880 152 0.1711 0.1874 REMARK 3 2 4.1808 - 3.3191 1.00 2789 141 0.1609 0.1757 REMARK 3 3 3.3191 - 2.8998 1.00 2757 149 0.1741 0.1702 REMARK 3 4 2.8998 - 2.6347 1.00 2751 146 0.1775 0.2071 REMARK 3 5 2.6347 - 2.4459 1.00 2758 143 0.1740 0.1982 REMARK 3 6 2.4459 - 2.3017 1.00 2723 144 0.1736 0.2130 REMARK 3 7 2.3017 - 2.1865 1.00 2750 145 0.1704 0.2176 REMARK 3 8 2.1865 - 2.0913 1.00 2720 145 0.1684 0.2027 REMARK 3 9 2.0913 - 2.0108 1.00 2694 140 0.1672 0.2025 REMARK 3 10 2.0108 - 1.9414 1.00 2708 143 0.1639 0.2108 REMARK 3 11 1.9414 - 1.8807 0.99 2688 141 0.1755 0.2097 REMARK 3 12 1.8807 - 1.8270 0.92 2505 133 0.2078 0.2288 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2848 REMARK 3 ANGLE : 0.962 3864 REMARK 3 CHIRALITY : 0.055 431 REMARK 3 PLANARITY : 0.005 487 REMARK 3 DIHEDRAL : 13.947 1647 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 7:369 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2153 -21.9975 -6.0986 REMARK 3 T TENSOR REMARK 3 T11: 0.1375 T22: 0.1571 REMARK 3 T33: 0.1209 T12: -0.0160 REMARK 3 T13: 0.0029 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.6283 L22: 0.8198 REMARK 3 L33: 1.3080 L12: 0.2275 REMARK 3 L13: 0.8020 L23: 0.0740 REMARK 3 S TENSOR REMARK 3 S11: 0.0672 S12: -0.3005 S13: -0.0182 REMARK 3 S21: 0.1070 S22: -0.0848 S23: -0.0960 REMARK 3 S31: 0.0924 S32: -0.0863 S33: 0.0145 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 402:402 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9163 -16.1657 -9.7582 REMARK 3 T TENSOR REMARK 3 T11: 0.1230 T22: 0.1660 REMARK 3 T33: 0.1158 T12: -0.0050 REMARK 3 T13: -0.0060 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 6.7469 L22: 2.7187 REMARK 3 L33: 2.1191 L12: 0.3851 REMARK 3 L13: 1.1990 L23: -1.4013 REMARK 3 S TENSOR REMARK 3 S11: 0.0526 S12: -0.2314 S13: 0.2281 REMARK 3 S21: 0.0266 S22: -0.0463 S23: -0.0541 REMARK 3 S31: -0.1467 S32: -0.1474 S33: -0.0017 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 404:404 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.1172 -21.6116 -18.6564 REMARK 3 T TENSOR REMARK 3 T11: 0.3369 T22: 0.3596 REMARK 3 T33: 0.4570 T12: -0.0156 REMARK 3 T13: -0.1198 T23: 0.1137 REMARK 3 L TENSOR REMARK 3 L11: 8.4006 L22: 8.6002 REMARK 3 L33: 6.4918 L12: 8.3696 REMARK 3 L13: 7.3285 L23: 7.4620 REMARK 3 S TENSOR REMARK 3 S11: 0.0967 S12: 0.0752 S13: -0.1115 REMARK 3 S21: -0.1474 S22: -0.0752 S23: -0.1501 REMARK 3 S31: 0.1975 S32: 0.0756 S33: -0.0215 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KPR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222037. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.971 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34465 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.827 REMARK 200 RESOLUTION RANGE LOW (A) : 36.372 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.46600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB 3SMS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, AMMONIUM ACETATE, CITRATE, REMARK 280 PH 5.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.92767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.85533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.85533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.92767 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -45.85533 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 GLY A -6 REMARK 465 SER A -5 REMARK 465 SER A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 GLY A 5 REMARK 465 LEU A 6 REMARK 465 ARG A 9 REMARK 465 THR A 106 REMARK 465 LEU A 107 REMARK 465 GLN A 108 REMARK 465 SER A 370 REMARK 465 ASP A 371 REMARK 465 ASP A 372 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 GLN A 39 CG CD OE1 NE2 REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 ASP A 101 CG OD1 OD2 REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 ASN A 103 CG OD1 ND2 REMARK 470 SER A 105 OG REMARK 470 ASN A 130 CB CG OD1 ND2 REMARK 470 HIS A 132 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 170 CG CD OE1 OE2 REMARK 470 LYS A 202 CG CD CE NZ REMARK 470 LYS A 347 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 103 3.94 -66.56 REMARK 500 SER A 153 165.31 70.94 REMARK 500 THR A 209 -166.88 -172.45 REMARK 500 GLU A 354 -104.01 59.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP A 402 O3G REMARK 620 2 ANP A 402 O2B 87.5 REMARK 620 3 HOH A 521 O 174.6 88.1 REMARK 620 4 HOH A 553 O 95.0 177.4 89.4 REMARK 620 5 HOH A 559 O 97.8 89.8 85.5 89.1 REMARK 620 6 HOH A 581 O 86.3 93.4 90.7 87.5 174.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PAU A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KPT RELATED DB: PDB REMARK 900 RELATED ID: 5KPZ RELATED DB: PDB REMARK 900 RELATED ID: 5KQ8 RELATED DB: PDB REMARK 900 RELATED ID: 5KQD RELATED DB: PDB DBREF 5KPR A 12 370 UNP Q9H999 PANK3_HUMAN 12 370 SEQADV 5KPR MET A -7 UNP Q9H999 INITIATING METHIONINE SEQADV 5KPR GLY A -6 UNP Q9H999 EXPRESSION TAG SEQADV 5KPR SER A -5 UNP Q9H999 EXPRESSION TAG SEQADV 5KPR SER A -4 UNP Q9H999 EXPRESSION TAG SEQADV 5KPR HIS A -3 UNP Q9H999 EXPRESSION TAG SEQADV 5KPR HIS A -2 UNP Q9H999 EXPRESSION TAG SEQADV 5KPR HIS A -1 UNP Q9H999 EXPRESSION TAG SEQADV 5KPR HIS A 0 UNP Q9H999 EXPRESSION TAG SEQADV 5KPR HIS A 1 UNP Q9H999 EXPRESSION TAG SEQADV 5KPR HIS A 2 UNP Q9H999 EXPRESSION TAG SEQADV 5KPR SER A 3 UNP Q9H999 EXPRESSION TAG SEQADV 5KPR SER A 4 UNP Q9H999 EXPRESSION TAG SEQADV 5KPR GLY A 5 UNP Q9H999 EXPRESSION TAG SEQADV 5KPR LEU A 6 UNP Q9H999 EXPRESSION TAG SEQADV 5KPR VAL A 7 UNP Q9H999 EXPRESSION TAG SEQADV 5KPR PRO A 8 UNP Q9H999 EXPRESSION TAG SEQADV 5KPR ARG A 9 UNP Q9H999 EXPRESSION TAG SEQADV 5KPR GLY A 10 UNP Q9H999 EXPRESSION TAG SEQADV 5KPR SER A 11 UNP Q9H999 EXPRESSION TAG SEQADV 5KPR ASP A 371 UNP Q9H999 EXPRESSION TAG SEQADV 5KPR ASP A 372 UNP Q9H999 EXPRESSION TAG SEQRES 1 A 380 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 380 LEU VAL PRO ARG GLY SER PRO TRP PHE GLY MET ASP ILE SEQRES 3 A 380 GLY GLY THR LEU VAL LYS LEU SER TYR PHE GLU PRO ILE SEQRES 4 A 380 ASP ILE THR ALA GLU GLU GLU GLN GLU GLU VAL GLU SER SEQRES 5 A 380 LEU LYS SER ILE ARG LYS TYR LEU THR SER ASN VAL ALA SEQRES 6 A 380 TYR GLY SER THR GLY ILE ARG ASP VAL HIS LEU GLU LEU SEQRES 7 A 380 LYS ASP LEU THR LEU PHE GLY ARG ARG GLY ASN LEU HIS SEQRES 8 A 380 PHE ILE ARG PHE PRO THR GLN ASP LEU PRO THR PHE ILE SEQRES 9 A 380 GLN MET GLY ARG ASP LYS ASN PHE SER THR LEU GLN THR SEQRES 10 A 380 VAL LEU CYS ALA THR GLY GLY GLY ALA TYR LYS PHE GLU SEQRES 11 A 380 LYS ASP PHE ARG THR ILE GLY ASN LEU HIS LEU HIS LYS SEQRES 12 A 380 LEU ASP GLU LEU ASP CYS LEU VAL LYS GLY LEU LEU TYR SEQRES 13 A 380 ILE ASP SER VAL SER PHE ASN GLY GLN ALA GLU CYS TYR SEQRES 14 A 380 TYR PHE ALA ASN ALA SER GLU PRO GLU ARG CYS GLN LYS SEQRES 15 A 380 MET PRO PHE ASN LEU ASP ASP PRO TYR PRO LEU LEU VAL SEQRES 16 A 380 VAL ASN ILE GLY SER GLY VAL SER ILE LEU ALA VAL HIS SEQRES 17 A 380 SER LYS ASP ASN TYR LYS ARG VAL THR GLY THR SER LEU SEQRES 18 A 380 GLY GLY GLY THR PHE LEU GLY LEU CYS SER LEU LEU THR SEQRES 19 A 380 GLY CYS GLU SER PHE GLU GLU ALA LEU GLU MET ALA SER SEQRES 20 A 380 LYS GLY ASP SER THR GLN ALA ASP LYS LEU VAL ARG ASP SEQRES 21 A 380 ILE TYR GLY GLY ASP TYR GLU ARG PHE GLY LEU PRO GLY SEQRES 22 A 380 TRP ALA VAL ALA SER SER PHE GLY ASN MET ILE TYR LYS SEQRES 23 A 380 GLU LYS ARG GLU SER VAL SER LYS GLU ASP LEU ALA ARG SEQRES 24 A 380 ALA THR LEU VAL THR ILE THR ASN ASN ILE GLY SER VAL SEQRES 25 A 380 ALA ARG MET CYS ALA VAL ASN GLU LYS ILE ASN ARG VAL SEQRES 26 A 380 VAL PHE VAL GLY ASN PHE LEU ARG VAL ASN THR LEU SER SEQRES 27 A 380 MET LYS LEU LEU ALA TYR ALA LEU ASP TYR TRP SER LYS SEQRES 28 A 380 GLY GLN LEU LYS ALA LEU PHE LEU GLU HIS GLU GLY TYR SEQRES 29 A 380 PHE GLY ALA VAL GLY ALA LEU LEU GLY LEU PRO ASN PHE SEQRES 30 A 380 SER ASP ASP HET MG A 401 1 HET ANP A 402 31 HET EDO A 403 4 HET PAU A 404 15 HETNAM MG MAGNESIUM ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM EDO 1,2-ETHANEDIOL HETNAM PAU PANTOTHENOIC ACID HETSYN EDO ETHYLENE GLYCOL HETSYN PAU N-[(2R)-2,4-DIHYDROXY-3,3-DIMETHYLBUTANOYL]-BETA- HETSYN 2 PAU ALANINE FORMUL 2 MG MG 2+ FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 EDO C2 H6 O2 FORMUL 5 PAU C9 H17 N O5 FORMUL 6 HOH *161(H2 O) HELIX 1 AA1 THR A 34 GLU A 41 1 8 HELIX 2 AA2 VAL A 42 ASN A 55 1 14 HELIX 3 AA3 VAL A 66 GLU A 69 5 4 HELIX 4 AA4 ASP A 91 ARG A 100 1 10 HELIX 5 AA5 ASP A 101 SER A 105 5 5 HELIX 6 AA6 GLY A 115 PHE A 121 1 7 HELIX 7 AA7 PHE A 121 ARG A 126 1 6 HELIX 8 AA8 ASP A 137 SER A 153 1 17 HELIX 9 AA9 GLY A 214 GLY A 227 1 14 HELIX 10 AB1 SER A 230 GLY A 241 1 12 HELIX 11 AB2 ASP A 242 ALA A 246 5 5 HELIX 12 AB3 VAL A 250 GLY A 255 1 6 HELIX 13 AB4 PHE A 272 ILE A 276 5 5 HELIX 14 AB5 TYR A 277 VAL A 284 1 8 HELIX 15 AB6 SER A 285 LYS A 313 1 29 HELIX 16 AB7 GLY A 321 ARG A 325 5 5 HELIX 17 AB8 ASN A 327 SER A 342 1 16 HELIX 18 AB9 TYR A 356 LEU A 364 1 9 HELIX 19 AC1 GLY A 365 PHE A 369 5 5 SHEET 1 AA1 4 ALA A 57 TYR A 58 0 SHEET 2 AA1 4 GLY A 62 ARG A 64 -1 O GLY A 62 N TYR A 58 SHEET 3 AA1 4 ARG A 78 PRO A 88 -1 O ARG A 86 N ILE A 63 SHEET 4 AA1 4 LEU A 70 LEU A 75 -1 N LEU A 75 O ARG A 78 SHEET 1 AA2 7 ALA A 57 TYR A 58 0 SHEET 2 AA2 7 GLY A 62 ARG A 64 -1 O GLY A 62 N TYR A 58 SHEET 3 AA2 7 ARG A 78 PRO A 88 -1 O ARG A 86 N ILE A 63 SHEET 4 AA2 7 LEU A 22 PRO A 30 -1 N VAL A 23 O PHE A 87 SHEET 5 AA2 7 TRP A 13 ILE A 18 -1 N GLY A 15 O SER A 26 SHEET 6 AA2 7 VAL A 110 THR A 114 1 O THR A 114 N MET A 16 SHEET 7 AA2 7 HIS A 132 LYS A 135 1 O HIS A 134 N LEU A 111 SHEET 1 AA3 7 GLN A 173 PRO A 176 0 SHEET 2 AA3 7 CYS A 160 ALA A 164 -1 N TYR A 162 O MET A 175 SHEET 3 AA3 7 LYS A 347 LEU A 351 -1 O PHE A 350 N TYR A 161 SHEET 4 AA3 7 ARG A 316 VAL A 320 1 N VAL A 317 O LEU A 349 SHEET 5 AA3 7 LEU A 185 ILE A 190 1 N VAL A 188 O VAL A 318 SHEET 6 AA3 7 VAL A 194 SER A 201 -1 O VAL A 199 N LEU A 185 SHEET 7 AA3 7 ASN A 204 THR A 211 -1 O ASN A 204 N HIS A 200 SHEET 1 AA4 2 LYS A 248 LEU A 249 0 SHEET 2 AA4 2 VAL A 268 SER A 270 -1 O SER A 270 N LYS A 248 LINK MG MG A 401 O3G ANP A 402 1555 1555 2.03 LINK MG MG A 401 O2B ANP A 402 1555 1555 2.01 LINK MG MG A 401 O HOH A 521 1555 1555 2.11 LINK MG MG A 401 O HOH A 553 1555 1555 2.09 LINK MG MG A 401 O HOH A 559 1555 1555 2.15 LINK MG MG A 401 O HOH A 581 1555 1555 2.14 CISPEP 1 TYR A 183 PRO A 184 0 -4.04 SITE 1 AC1 5 ANP A 402 HOH A 521 HOH A 553 HOH A 559 SITE 2 AC1 5 HOH A 581 SITE 1 AC2 29 GLY A 19 GLY A 20 THR A 21 LEU A 22 SITE 2 AC2 29 LYS A 24 GLU A 138 GLY A 191 SER A 192 SITE 3 AC2 29 GLY A 193 GLY A 215 GLY A 216 PHE A 231 SITE 4 AC2 29 GLU A 232 ILE A 253 ASN A 322 PHE A 323 SITE 5 AC2 29 ARG A 325 MG A 401 EDO A 403 PAU A 404 SITE 6 AC2 29 HOH A 521 HOH A 529 HOH A 543 HOH A 553 SITE 7 AC2 29 HOH A 559 HOH A 565 HOH A 581 HOH A 586 SITE 8 AC2 29 HOH A 588 SITE 1 AC3 7 LEU A 22 THR A 61 ILE A 63 ARG A 86 SITE 2 AC3 7 PHE A 87 PRO A 88 ANP A 402 SITE 1 AC4 13 GLU A 138 GLY A 193 VAL A 194 SER A 195 SITE 2 AC4 13 ARG A 207 GLY A 210 THR A 211 SER A 212 SITE 3 AC4 13 ALA A 269 ANP A 402 HOH A 526 HOH A 544 SITE 4 AC4 13 HOH A 605 CRYST1 98.965 98.965 68.783 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010105 0.005834 0.000000 0.00000 SCALE2 0.000000 0.011668 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014538 0.00000