HEADER RNA 06-JUL-16 5KQE TITLE SOLUTION STRUCTURE OF P2A-J2A/B-P2B OF MEDAKA TELOMERASE RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TELOMERASE RNA P2AB; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ORYZIAS LATIPES; SOURCE 4 ORGANISM_TAXID: 8090 KEYWDS TELOMERASE RNA TR MEDAKA P2AB, RNA EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.WANG,J.FEIGON REVDAT 7 15-MAY-24 5KQE 1 REMARK REVDAT 6 14-JUN-23 5KQE 1 REMARK REVDAT 5 27-NOV-19 5KQE 1 REMARK REVDAT 4 27-SEP-17 5KQE 1 COMPND JRNL REVDAT 3 14-SEP-16 5KQE 1 JRNL REVDAT 2 31-AUG-16 5KQE 1 JRNL REVDAT 1 24-AUG-16 5KQE 0 JRNL AUTH Y.WANG,J.D.YESSELMAN,Q.ZHANG,M.KANG,J.FEIGON JRNL TITL STRUCTURAL CONSERVATION IN THE TEMPLATE/PSEUDOKNOT DOMAIN OF JRNL TITL 2 VERTEBRATE TELOMERASE RNA FROM TELEOST FISH TO HUMAN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 E5125 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 27531956 JRNL DOI 10.1073/PNAS.1607411113 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KQE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000220773. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283; 298 REMARK 210 PH : 6.4; 6.4 REMARK 210 IONIC STRENGTH : 100; 100 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 10 MM SODIUM PHOSPHATE, 100 MM REMARK 210 POTASSIUM CHLORIDE, 1.0 MM [U- REMARK 210 13C; U-15N] TELOMERASE RNA P2AB, REMARK 210 90% H2O/10% D2O; 10 MM SODIUM REMARK 210 PHOSPHATE, 100 MM POTASSIUM REMARK 210 CHLORIDE, 1.0 MM [U-13C; U-15N] REMARK 210 TELOMERASE RNA P2AB, 100% D2O; REMARK 210 10 MM SODIUM PHOSPHATE, 100 MM REMARK 210 POTASSIUM CHLORIDE, 1.0 MM REMARK 210 TELOMERASE RNA P2AB, 90% H2O/10% REMARK 210 D2O; 10 MM SODIUM PHOSPHATE, 100 REMARK 210 MM POTASSIUM CHLORIDE, 1.0 MM REMARK 210 TELOMERASE RNA P2AB, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HCCH-TOCSY; 2D FILTERED/ REMARK 210 EDITED NOESY; 2D DQF-COSY; JNN- REMARK 210 COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DRX; DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, X-PLOR NIH 2.42 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 C A 13 0.06 SIDE CHAIN REMARK 500 3 C A 13 0.06 SIDE CHAIN REMARK 500 9 C A 13 0.06 SIDE CHAIN REMARK 500 10 C A 13 0.07 SIDE CHAIN REMARK 500 13 C A 13 0.06 SIDE CHAIN REMARK 500 19 C A 13 0.06 SIDE CHAIN REMARK 500 20 C A 13 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30132 RELATED DB: BMRB DBREF 5KQE A 1 36 PDB 5KQE 5KQE 1 36 SEQRES 1 A 36 G G G U G U A C U U A A C SEQRES 2 A 36 G U U U G C U U C G G C A SEQRES 3 A 36 A A C U A C A U C C CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1