HEADER TRANSFERASE 06-JUL-16 5KQJ TITLE SOLUTION STRUCTURE OF ANTIBIOTIC-RESISTANCE FACTOR ANT(2'')-IA REVEALS TITLE 2 SUBSTRATE-REGULATED CONFORMATION DYNAMICS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2''-AMINOGLYCOSIDE NUCLEOTIDYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AAD(2''),GENTAMICIN 2''-NUCLEOTIDYLTRANSFERASE,GENTAMICIN COMPND 5 RESISTANCE PROTEIN; COMPND 6 EC: 2.7.7.46; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: AADB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS ANTIBIOTIC RESISTANCE, AMINOGLYCOSIDE, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR V.R.BACOT-DAVIS,A.M.BERGHUIS REVDAT 8 15-MAY-24 5KQJ 1 REMARK REVDAT 7 14-JUN-23 5KQJ 1 REMARK REVDAT 6 08-JAN-20 5KQJ 1 REMARK REVDAT 5 08-AUG-18 5KQJ 1 SOURCE JRNL REVDAT 4 15-NOV-17 5KQJ 1 JRNL REVDAT 3 01-NOV-17 5KQJ 1 REMARK REVDAT 2 20-SEP-17 5KQJ 1 REMARK REVDAT 1 12-JUL-17 5KQJ 0 JRNL AUTH V.R.BACOT-DAVIS,A.V.BASSENDEN,T.SPRULES,A.M.BERGHUIS JRNL TITL EFFECT OF SOLVENT AND PROTEIN DYNAMICS IN LIGAND RECOGNITION JRNL TITL 2 AND INHIBITION OF AMINOGLYCOSIDE ADENYLTRANSFERASE JRNL TITL 3 2′′-IA. JRNL REF PROTEIN SCI. V. 26 1852 2017 JRNL REFN ESSN 1469-896X JRNL PMID 28734024 JRNL DOI 10.1002/PRO.3224 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KQJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222620. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 ANT(2'')-IA, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D HN(CO) REMARK 210 CA; 3D HCCH-TOCSY; 3D H(CCO)NH; REMARK 210 3D C(CO)NH; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; DRX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR, SPARKY, NMRPIPE, REMARK 210 PONDEROSA-C/S REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 15 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : BACK CALCULATED DATA AGREE WITH REMARK 210 EXPERIMENTAL NOESY SPECTRUM REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER AS DETERMINED BY KINETIC ASSAY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 111 87.42 -69.19 REMARK 500 3 ASN A 20 32.88 73.19 REMARK 500 3 ARG A 53 47.79 -88.79 REMARK 500 3 ALA A 111 89.49 -69.58 REMARK 500 4 ARG A 53 38.01 -83.35 REMARK 500 4 ALA A 111 82.45 -69.49 REMARK 500 5 ARG A 53 47.53 -87.91 REMARK 500 6 ARG A 53 41.13 -84.67 REMARK 500 7 ASN A 20 36.87 72.72 REMARK 500 7 ARG A 53 39.12 -83.60 REMARK 500 8 ARG A 53 38.00 -82.96 REMARK 500 9 ARG A 53 35.49 -81.64 REMARK 500 10 ARG A 53 36.47 -82.43 REMARK 500 12 ARG A 53 36.89 -83.42 REMARK 500 13 ARG A 53 35.31 -83.26 REMARK 500 14 ARG A 53 37.82 -82.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30133 RELATED DB: BMRB DBREF 5KQJ A 1 177 UNP P0AE05 AADB1_KLEPN 1 177 SEQADV 5KQJ LEU A 178 UNP P0AE05 EXPRESSION TAG SEQADV 5KQJ GLU A 179 UNP P0AE05 EXPRESSION TAG SEQADV 5KQJ HIS A 180 UNP P0AE05 EXPRESSION TAG SEQADV 5KQJ HIS A 181 UNP P0AE05 EXPRESSION TAG SEQADV 5KQJ HIS A 182 UNP P0AE05 EXPRESSION TAG SEQADV 5KQJ HIS A 183 UNP P0AE05 EXPRESSION TAG SEQADV 5KQJ HIS A 184 UNP P0AE05 EXPRESSION TAG SEQADV 5KQJ HIS A 185 UNP P0AE05 EXPRESSION TAG SEQRES 1 A 185 MET ASP THR THR GLN VAL THR LEU ILE HIS LYS ILE LEU SEQRES 2 A 185 ALA ALA ALA ASP GLU ARG ASN LEU PRO LEU TRP ILE GLY SEQRES 3 A 185 GLY GLY TRP ALA ILE ASP ALA ARG LEU GLY ARG VAL THR SEQRES 4 A 185 ARG LYS HIS ASP ASP ILE ASP LEU THR PHE PRO GLY GLU SEQRES 5 A 185 ARG ARG GLY GLU LEU GLU ALA ILE VAL GLU MET LEU GLY SEQRES 6 A 185 GLY ARG VAL MET GLU GLU LEU ASP TYR GLY PHE LEU ALA SEQRES 7 A 185 GLU ILE GLY ASP GLU LEU LEU ASP CYS GLU PRO ALA TRP SEQRES 8 A 185 TRP ALA ASP GLU ALA TYR GLU ILE ALA GLU ALA PRO GLN SEQRES 9 A 185 GLY SER CYS PRO GLU ALA ALA GLU GLY VAL ILE ALA GLY SEQRES 10 A 185 ARG PRO VAL ARG CYS ASN SER TRP GLU ALA ILE ILE TRP SEQRES 11 A 185 ASP TYR PHE TYR TYR ALA ASP GLU VAL PRO PRO VAL ASP SEQRES 12 A 185 TRP PRO THR LYS HIS ILE GLU SER TYR ARG LEU ALA CYS SEQRES 13 A 185 THR SER LEU GLY ALA GLU LYS VAL GLU VAL LEU ARG ALA SEQRES 14 A 185 ALA PHE ARG SER ARG TYR ALA ALA LEU GLU HIS HIS HIS SEQRES 15 A 185 HIS HIS HIS HELIX 1 AA1 MET A 1 ASN A 20 1 20 HELIX 2 AA2 GLY A 26 GLY A 36 1 11 HELIX 3 AA3 ARG A 53 GLY A 65 1 13 HELIX 4 AA4 SER A 124 VAL A 139 1 16 HELIX 5 AA5 PRO A 145 GLY A 160 1 16 HELIX 6 AA6 GLY A 160 HIS A 185 1 26 SHEET 1 AA1 5 TRP A 24 ILE A 25 0 SHEET 2 AA1 5 ASP A 44 PRO A 50 -1 O THR A 48 N TRP A 24 SHEET 3 AA1 5 GLU A 83 ALA A 93 1 O LEU A 84 N ILE A 45 SHEET 4 AA1 5 GLY A 75 ILE A 80 -1 N ALA A 78 O LEU A 85 SHEET 5 AA1 5 ARG A 67 LEU A 72 -1 N GLU A 70 O LEU A 77 SHEET 1 AA2 4 TRP A 24 ILE A 25 0 SHEET 2 AA2 4 ASP A 44 PRO A 50 -1 O THR A 48 N TRP A 24 SHEET 3 AA2 4 GLU A 83 ALA A 93 1 O LEU A 84 N ILE A 45 SHEET 4 AA2 4 ALA A 96 ILE A 99 -1 O ALA A 96 N ALA A 93 SHEET 1 AA3 2 GLY A 113 ILE A 115 0 SHEET 2 AA3 2 ARG A 118 VAL A 120 -1 O VAL A 120 N GLY A 113 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1