HEADER TRANSFERASE 06-JUL-16 5KQT TITLE DIRECTED EVOLUTION OF TRANSAMINASES BY ANCESTRAL RECONSTRUCTION. USING TITLE 2 OLD PROTEINS FOR NEW CHEMISTRIES COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-AMINOBURYRATE TRANSAMINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.6.1.18; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP. AAC; SOURCE 3 ORGANISM_TAXID: 1502784; SOURCE 4 GENE: FG99_14885; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS PHYLOGENETICS, DIRECTED EVOLUTION, TRANSAMINASE, PROTEIN ENGINEERING, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.WILDING,J.NEWMAN,T.S.PEAT,C.SCOTT REVDAT 3 04-OCT-23 5KQT 1 REMARK REVDAT 2 30-JAN-19 5KQT 1 JRNL REVDAT 1 12-JUL-17 5KQT 0 JRNL AUTH M.WILDING,T.S.PEAT,S.KALYAANAMOORTHY,J.NEWMAN,C.SCOTT, JRNL AUTH 2 L.S.JERMIIN JRNL TITL REVERSE ENGINEERING: TRANSAMINASE BIOCATALYST DEVELOPMENT JRNL TITL 2 USING ANCESTRAL SEQUENCE RECONSTRUCTION JRNL REF GREEN CHEMISTRY V. 19 5375 2017 JRNL DOI 10.1039/C7GC02343J REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30450 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1625 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2134 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3447 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 182 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.28000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 0.89000 REMARK 3 B12 (A**2) : -0.14000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.192 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.621 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3578 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3412 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4855 ; 1.389 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7823 ; 0.955 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 462 ; 6.702 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;33.578 ;23.203 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 562 ;13.530 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;17.272 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 532 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4116 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 827 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1842 ; 1.057 ; 2.317 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1841 ; 1.057 ; 2.316 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2306 ; 1.641 ; 3.469 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2307 ; 1.641 ; 3.470 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1735 ; 1.243 ; 2.457 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1735 ; 1.243 ; 2.457 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2549 ; 2.016 ; 3.629 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 15314 ; 3.661 ;43.977 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 15314 ; 3.661 ;43.977 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5KQT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222594. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32214 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 47.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.70 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 20.70 REMARK 200 R MERGE FOR SHELL (I) : 0.72000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3GJU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150 NL PLUS 150 NL DROPS OF PROTEIN AT REMARK 280 5 MG/ML AND RESERVOIR WHICH CONSISTED OF 1.6 M AMMONIUM SULFATE, REMARK 280 1% DIOXANE, 50 MM MES PH 6.8, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 228.87600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 114.43800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 171.65700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.21900 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 286.09500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 228.87600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 114.43800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 57.21900 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 171.65700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 286.09500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 33.17300 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 57.45732 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 57.21900 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 607 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 767 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 782 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 3 CG OD1 OD2 REMARK 470 TYR A 4 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 202 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 345 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 19 65.77 38.42 REMARK 500 HIS A 21 106.17 -50.21 REMARK 500 CYS A 60 -31.65 -131.38 REMARK 500 LEU A 81 93.18 -161.16 REMARK 500 LYS A 112 -56.56 -125.93 REMARK 500 SER A 148 -163.62 -117.45 REMARK 500 PHE A 265 48.89 70.35 REMARK 500 ALA A 287 -139.65 -174.48 REMARK 500 LYS A 288 -99.41 40.17 REMARK 500 MET A 381 36.07 -91.20 REMARK 500 MET A 381 34.97 -91.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 3 TYR A 4 -134.61 REMARK 500 TYR A 83 TYR A 84 146.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KQU RELATED DB: PDB REMARK 900 RELATED ID: 5KQW RELATED DB: PDB REMARK 900 RELATED ID: 5KR3 RELATED DB: PDB REMARK 900 RELATED ID: 5KR4 RELATED DB: PDB REMARK 900 RELATED ID: 5KR5 RELATED DB: PDB REMARK 900 RELATED ID: 5KR6 RELATED DB: PDB DBREF1 5KQT A 1 459 UNP A0A081YAN7_9PSED DBREF2 5KQT A A0A081YAN7 1 459 SEQADV 5KQT MET A -19 UNP A0A081YAN INITIATING METHIONINE SEQADV 5KQT GLY A -18 UNP A0A081YAN EXPRESSION TAG SEQADV 5KQT SER A -17 UNP A0A081YAN EXPRESSION TAG SEQADV 5KQT SER A -16 UNP A0A081YAN EXPRESSION TAG SEQADV 5KQT HIS A -15 UNP A0A081YAN EXPRESSION TAG SEQADV 5KQT HIS A -14 UNP A0A081YAN EXPRESSION TAG SEQADV 5KQT HIS A -13 UNP A0A081YAN EXPRESSION TAG SEQADV 5KQT HIS A -12 UNP A0A081YAN EXPRESSION TAG SEQADV 5KQT HIS A -11 UNP A0A081YAN EXPRESSION TAG SEQADV 5KQT HIS A -10 UNP A0A081YAN EXPRESSION TAG SEQADV 5KQT SER A -9 UNP A0A081YAN EXPRESSION TAG SEQADV 5KQT SER A -8 UNP A0A081YAN EXPRESSION TAG SEQADV 5KQT GLY A -7 UNP A0A081YAN EXPRESSION TAG SEQADV 5KQT LEU A -6 UNP A0A081YAN EXPRESSION TAG SEQADV 5KQT VAL A -5 UNP A0A081YAN EXPRESSION TAG SEQADV 5KQT PRO A -4 UNP A0A081YAN EXPRESSION TAG SEQADV 5KQT ARG A -3 UNP A0A081YAN EXPRESSION TAG SEQADV 5KQT GLY A -2 UNP A0A081YAN EXPRESSION TAG SEQADV 5KQT SER A -1 UNP A0A081YAN EXPRESSION TAG SEQADV 5KQT HIS A 0 UNP A0A081YAN EXPRESSION TAG SEQRES 1 A 479 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 479 LEU VAL PRO ARG GLY SER HIS MET THR ASP TYR ALA LYS SEQRES 3 A 479 LEU PHE GLU GLN ASP ARG ALA HIS PHE MET HIS PRO SER SEQRES 4 A 479 THR HIS ALA HIS ASP HIS ALA SER GLY ALA LEU PRO GLY SEQRES 5 A 479 ARG ILE ILE THR GLY ALA SER GLY VAL ARG ILE ARG ASP SEQRES 6 A 479 HIS GLN GLY ARG GLU LEU LEU ASP ALA PHE ALA GLY LEU SEQRES 7 A 479 TYR CYS VAL ASN ILE GLY TYR GLY ARG LEU GLU VAL ALA SEQRES 8 A 479 ASP ALA ILE HIS GLU GLN ALA LYS GLN LEU ALA TYR TYR SEQRES 9 A 479 HIS THR TYR VAL GLY HIS ALA SER GLU ALA ILE ILE GLU SEQRES 10 A 479 LEU SER ALA ARG ILE ILE ARG ASP TRP ALA PRO ALA GLY SEQRES 11 A 479 MET LYS LYS VAL TYR TYR GLY LEU SER GLY SER ASP ALA SEQRES 12 A 479 ASN GLU THR GLN VAL LYS LEU VAL ARG TYR TYR ASN ASN SEQRES 13 A 479 VAL LEU GLY ARG PRO GLN LYS LYS LYS ILE ILE SER ARG SEQRES 14 A 479 GLN ARG GLY TYR HIS GLY SER GLY ILE VAL THR GLY SER SEQRES 15 A 479 LEU THR GLY LEU ALA SER PHE HIS GLN HIS PHE ASP LEU SEQRES 16 A 479 PRO VAL GLU GLY VAL LYS HIS THR LEU CYS PRO HIS PHE SEQRES 17 A 479 TYR LYS ALA PRO ALA GLY MET ASP GLU ALA ALA PHE VAL SEQRES 18 A 479 ARG HIS CYS ALA GLN GLU LEU GLU ASN LEU ILE LEU ALA SEQRES 19 A 479 GLU GLY PRO ASP THR VAL ALA ALA PHE ILE GLY GLU PRO SEQRES 20 A 479 VAL MET GLY THR GLY GLY ILE ILE VAL PRO PRO LYS GLY SEQRES 21 A 479 TYR TRP GLU ALA ILE GLN ALA VAL LEU ALA LYS TYR ASP SEQRES 22 A 479 VAL LEU LEU ILE ALA ASP GLU VAL VAL CYS ALA PHE GLY SEQRES 23 A 479 ARG LEU GLY ASP LYS MET GLY SER GLN ARG HIS ALA MET SEQRES 24 A 479 ARG PRO ASP LEU ILE THR THR ALA LYS GLY LEU THR SER SEQRES 25 A 479 ALA TYR ALA PRO LEU SER ALA VAL ILE VAL GLY GLU LYS SEQRES 26 A 479 VAL TRP ASP VAL ILE ASP SER ALA SER THR ARG GLU GLY SEQRES 27 A 479 ALA MET GLY HIS GLY TRP THR TYR SER GLY HIS PRO ILE SEQRES 28 A 479 CYS ALA ALA ALA ALA LEU ALA ASN LEU ASP ILE LEU GLU SEQRES 29 A 479 ARG GLU ASN ILE THR ALA ASN ALA ALA ASP VAL GLY GLY SEQRES 30 A 479 TYR LEU ASN GLN GLN LEU ARG GLN ALA PHE GLU GLY HIS SEQRES 31 A 479 PRO LEU VAL GLY GLU VAL ARG GLY ASP GLY MET LEU ALA SEQRES 32 A 479 ALA LEU GLU PHE MET ALA ASP ARG GLU ALA ARG THR PRO SEQRES 33 A 479 PHE ASP ALA ALA LEU LYS VAL GLY PRO LYS VAL SER ALA SEQRES 34 A 479 ALA CYS LEU GLU ARG GLY MET ILE ALA ARG ALA MET PRO SEQRES 35 A 479 HIS GLY ASP ILE LEU GLY PHE ALA PRO PRO LEU VAL LEU SEQRES 36 A 479 SER ARG ALA GLU ALA ASP GLU VAL VAL GLY ILE ALA LYS SEQRES 37 A 479 ALA ALA VAL ASP ALA VAL ALA ALA GLU VAL LEU HET SO4 A 501 5 HET PLP A 502 15 HET GOL A 503 6 HET CL A 504 1 HETNAM SO4 SULFATE ION HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 O4 S 2- FORMUL 3 PLP C8 H10 N O6 P FORMUL 4 GOL C3 H8 O3 FORMUL 5 CL CL 1- FORMUL 6 HOH *182(H2 O) HELIX 1 AA1 TYR A 4 PHE A 15 1 12 HELIX 2 AA2 HIS A 21 SER A 27 1 7 HELIX 3 AA3 PHE A 55 CYS A 60 1 6 HELIX 4 AA4 ARG A 67 ALA A 82 1 16 HELIX 5 AA5 SER A 92 TRP A 106 1 15 HELIX 6 AA6 SER A 119 LEU A 138 1 20 HELIX 7 AA7 ILE A 158 THR A 164 1 7 HELIX 8 AA8 LEU A 166 HIS A 170 5 5 HELIX 9 AA9 HIS A 187 ALA A 191 5 5 HELIX 10 AB1 ASP A 196 GLY A 216 1 21 HELIX 11 AB2 GLY A 240 TYR A 252 1 13 HELIX 12 AB3 MET A 272 HIS A 277 1 6 HELIX 13 AB4 ALA A 287 THR A 291 5 5 HELIX 14 AB5 GLU A 304 GLY A 318 1 15 HELIX 15 AB6 HIS A 329 GLU A 346 1 18 HELIX 16 AB7 ASN A 347 GLU A 368 1 22 HELIX 17 AB8 ASP A 398 LEU A 401 5 4 HELIX 18 AB9 LYS A 402 ARG A 414 1 13 HELIX 19 AC1 SER A 436 LEU A 459 1 24 SHEET 1 AA1 4 ILE A 35 SER A 39 0 SHEET 2 AA1 4 ARG A 42 ASP A 45 -1 O ARG A 44 N GLY A 37 SHEET 3 AA1 4 GLU A 50 ASP A 53 -1 O LEU A 51 N ILE A 43 SHEET 4 AA1 4 MET A 416 ILE A 417 1 O ILE A 417 N LEU A 52 SHEET 1 AA2 7 MET A 111 GLY A 117 0 SHEET 2 AA2 7 SER A 298 GLY A 303 -1 O VAL A 302 N LYS A 113 SHEET 3 AA2 7 LEU A 283 THR A 286 -1 N ILE A 284 O ILE A 301 SHEET 4 AA2 7 LEU A 255 ASP A 259 1 N ALA A 258 O LEU A 283 SHEET 5 AA2 7 VAL A 220 GLY A 225 1 N PHE A 223 O ILE A 257 SHEET 6 AA2 7 LYS A 145 ARG A 149 1 N ILE A 147 O ALA A 222 SHEET 7 AA2 7 VAL A 180 THR A 183 1 O LYS A 181 N SER A 148 SHEET 1 AA3 4 VAL A 373 ASP A 379 0 SHEET 2 AA3 4 LEU A 382 PHE A 387 -1 O GLU A 386 N GLU A 375 SHEET 3 AA3 4 ILE A 426 PHE A 429 -1 O PHE A 429 N ALA A 383 SHEET 4 AA3 4 ARG A 419 ALA A 420 -1 N ARG A 419 O GLY A 428 LINK NZ LYS A 288 C4A PLP A 502 1555 1555 1.32 CISPEP 1 LEU A 175 PRO A 176 0 8.06 SITE 1 AC1 4 SER A 121 ASP A 122 GLU A 125 TRP A 324 SITE 1 AC2 17 SER A 119 GLY A 120 SER A 121 TYR A 153 SITE 2 AC2 17 HIS A 154 GLU A 226 ASP A 259 VAL A 261 SITE 3 AC2 17 VAL A 262 LYS A 288 TRP A 324 THR A 325 SITE 4 AC2 17 HOH A 616 HOH A 632 HOH A 681 HOH A 707 SITE 5 AC2 17 HOH A 756 SITE 1 AC3 8 PRO A 186 HIS A 187 PHE A 188 TYR A 189 SITE 2 AC3 8 VAL A 236 GLU A 375 ARG A 377 HOH A 719 SITE 1 AC4 2 ASN A 347 ALA A 350 CRYST1 66.346 66.346 343.314 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015072 0.008702 0.000000 0.00000 SCALE2 0.000000 0.017404 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002913 0.00000