HEADER HYDROLASE/HYDROLASE INHIBITOR 07-JUL-16 5KR8 TITLE (4~{S},6~{S})-4-[2,4-BIS(FLUORANYL)PHENYL]-6-(3,5-DIMETHYL-1,2-OXAZOL- TITLE 2 4-YL)-4-METHYL-5,6-DIHYDRO-1,3-THIAZIN-2-AMINE (COMPOUND 5) BOUND TO TITLE 3 BACE1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-SECRETASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 14-454; COMPND 5 SYNONYM: ASPARTYL PROTEASE 2, ASP 2, BETA-SITE AMYLOID PRECURSOR COMPND 6 PROTEIN CLEAVING ENZYME 1, BETA-SITE APP CLEAVING ENZYME 1, MEMAPSIN- COMPND 7 2, MEMBRANE-ASSOCIATED ASPARTIC PROTEASE 2; COMPND 8 EC: 3.4.23.46; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BACE1, BACE, KIAA1149; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BACE-1, SMALL MOLECULE INHIBITOR, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.A.LEWIS,Y.J.WU,R.RAJAMANI,L.A.THOMPSON REVDAT 3 16-OCT-24 5KR8 1 JRNL REMARK REVDAT 2 05-OCT-16 5KR8 1 JRNL REVDAT 1 07-SEP-16 5KR8 0 JRNL AUTH Y.J.WU,J.GUERNON,J.SHI,L.MARCIN,M.HIGGINS,R.RAJAMANI, JRNL AUTH 2 J.MUCKELBAUER,H.LEWIS,C.CHANG,D.CAMAC,J.H.TOYN, JRNL AUTH 3 M.K.AHLIJANIAN,C.F.ALBRIGHT,J.E.MACOR,L.A.THOMPSON JRNL TITL DISCOVERY OF S3-TRUNCATED, C-6 HETEROARYL SUBSTITUTED JRNL TITL 2 AMINOTHIAZINE BETA-SITE APP CLEAVING ENZYME-1 (BACE1) JRNL TITL 3 INHIBITORS. JRNL REF J.MED.CHEM. V. 59 8593 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 27559936 JRNL DOI 10.1021/ACS.JMEDCHEM.6B01012 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.900 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30598 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9080 - 4.7102 1.00 2901 128 0.2204 0.2611 REMARK 3 2 4.7102 - 3.7391 1.00 2710 144 0.1790 0.1971 REMARK 3 3 3.7391 - 3.2665 1.00 2661 136 0.2043 0.2563 REMARK 3 4 3.2665 - 2.9679 1.00 2653 129 0.2188 0.2365 REMARK 3 5 2.9679 - 2.7552 1.00 2598 153 0.2307 0.2276 REMARK 3 6 2.7552 - 2.5928 1.00 2623 142 0.2402 0.2825 REMARK 3 7 2.5928 - 2.4629 1.00 2594 145 0.2347 0.2691 REMARK 3 8 2.4629 - 2.3557 1.00 2576 152 0.2330 0.2744 REMARK 3 9 2.3557 - 2.2650 1.00 2580 150 0.2206 0.2523 REMARK 3 10 2.2650 - 2.1869 1.00 2589 130 0.2159 0.2537 REMARK 3 11 2.1869 - 2.1185 1.00 2569 135 0.2155 0.2644 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2801 REMARK 3 ANGLE : 1.016 3819 REMARK 3 CHIRALITY : 0.065 425 REMARK 3 PLANARITY : 0.002 486 REMARK 3 DIHEDRAL : 14.445 959 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47P THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3302 29.8031 -2.4081 REMARK 3 T TENSOR REMARK 3 T11: 0.1685 T22: 0.1632 REMARK 3 T33: 0.1348 T12: -0.0249 REMARK 3 T13: 0.0288 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 1.5606 L22: 0.7321 REMARK 3 L33: 0.9590 L12: -0.9173 REMARK 3 L13: -0.9628 L23: 0.4023 REMARK 3 S TENSOR REMARK 3 S11: -0.0902 S12: 0.0336 S13: -0.0978 REMARK 3 S21: 0.0338 S22: -0.0022 S23: 0.0004 REMARK 3 S31: 0.1746 S32: -0.0076 S33: -0.0017 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 203 THROUGH 385 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6731 52.7833 2.7850 REMARK 3 T TENSOR REMARK 3 T11: 0.1606 T22: 0.1980 REMARK 3 T33: 0.3640 T12: 0.0132 REMARK 3 T13: 0.0902 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 1.0381 L22: 0.5864 REMARK 3 L33: 1.4109 L12: -0.5798 REMARK 3 L13: -0.7981 L23: 0.3597 REMARK 3 S TENSOR REMARK 3 S11: 0.1705 S12: 0.1034 S13: 0.4825 REMARK 3 S21: -0.1219 S22: 0.0343 S23: -0.4271 REMARK 3 S31: -0.1643 S32: -0.0600 S33: 0.5113 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KR8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222643. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30666 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.118 REMARK 200 RESOLUTION RANGE LOW (A) : 48.895 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG5000 MME, 9% PEG8000, 0.2 M REMARK 280 AMMONIUM IODIDE, 0.2 M SODIUM CITRATE, PH 6.4, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.94767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 113.89533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 85.42150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 142.36917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.47383 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.94767 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 113.89533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 142.36917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 85.42150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 28.47383 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 705 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 ALA A 1 REMARK 465 GLY A 2 REMARK 465 VAL A 3 REMARK 465 LEU A 4 REMARK 465 PRO A 5 REMARK 465 ALA A 6 REMARK 465 HIS A 7 REMARK 465 GLY A 8 REMARK 465 THR A 9 REMARK 465 GLN A 10 REMARK 465 HIS A 11 REMARK 465 GLY A 12 REMARK 465 ILE A 13 REMARK 465 ARG A 14 REMARK 465 LEU A 15 REMARK 465 PRO A 16 REMARK 465 LEU A 17 REMARK 465 ARG A 18 REMARK 465 SER A 19 REMARK 465 GLY A 20 REMARK 465 LEU A 21 REMARK 465 GLY A 22 REMARK 465 GLY A 23 REMARK 465 ALA A 24 REMARK 465 PRO A 25 REMARK 465 LEU A 26 REMARK 465 GLY A 27 REMARK 465 LEU A 28 REMARK 465 ARG A 29 REMARK 465 LEU A 30 REMARK 465 PRO A 31 REMARK 465 ARG A 32 REMARK 465 GLU A 33 REMARK 465 THR A 34 REMARK 465 ASP A 35 REMARK 465 GLU A 36 REMARK 465 GLU A 37 REMARK 465 PRO A 38 REMARK 465 GLU A 39 REMARK 465 GLU A 40 REMARK 465 PRO A 41 REMARK 465 GLY A 42 REMARK 465 ARG A 43 REMARK 465 ARG A 44 REMARK 465 GLY A 45 REMARK 465 SER A 46 REMARK 465 ALA A 205 REMARK 465 GLY A 206 REMARK 465 PHE A 207 REMARK 465 PRO A 208 REMARK 465 LEU A 209 REMARK 465 ASN A 210 REMARK 465 GLN A 211 REMARK 465 SER A 212 REMARK 465 GLU A 213 REMARK 465 VAL A 214 REMARK 465 LEU A 215 REMARK 465 ALA A 216 REMARK 465 TRP A 318 REMARK 465 GLN A 319 REMARK 465 ALA A 320 REMARK 465 GLY A 321 REMARK 465 THR A 322 REMARK 465 THR A 323 REMARK 465 PRO A 324 REMARK 465 TRP A 325 REMARK 465 GLU A 358 REMARK 465 ASP A 359 REMARK 465 VAL A 360 REMARK 465 ALA A 361 REMARK 465 THR A 362 REMARK 465 SER A 363 REMARK 465 GLN A 364 REMARK 465 ASP A 365 REMARK 465 ILE A 434 REMARK 465 PRO A 435 REMARK 465 GLN A 436 REMARK 465 THR A 437 REMARK 465 ASP A 438 REMARK 465 GLU A 439 REMARK 465 SER A 440 REMARK 465 THR A 441 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 48 CG1 CG2 REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 MET A 50 CE REMARK 470 LYS A 57 CD CE NZ REMARK 470 ARG A 98 CZ NH1 NH2 REMARK 470 ARG A 112 CD NE CZ NH1 NH2 REMARK 470 LYS A 113 CD CE NZ REMARK 470 GLN A 121 CG CD OE1 NE2 REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 ASN A 140 OD1 ND2 REMARK 470 GLU A 152 CD OE1 OE2 REMARK 470 GLU A 173 CD OE1 OE2 REMARK 470 ARG A 176 CZ NH1 NH2 REMARK 470 LYS A 190 CE NZ REMARK 470 MET A 222 CE REMARK 470 ARG A 243 NH1 NH2 REMARK 470 GLN A 259 CG CD OE1 NE2 REMARK 470 LYS A 262 CG CD CE NZ REMARK 470 ARG A 283 NH1 NH2 REMARK 470 LYS A 287 CD CE NZ REMARK 470 GLU A 290 CG CD OE1 OE2 REMARK 470 VAL A 293 CG1 CG2 REMARK 470 LYS A 294 CG CD CE NZ REMARK 470 LYS A 297 CE NZ REMARK 470 SER A 301 OG REMARK 470 GLU A 303 CD OE1 OE2 REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 ASP A 307 CG OD1 OD2 REMARK 470 GLN A 314 CG CD OE1 NE2 REMARK 470 VAL A 316 CG1 CG2 REMARK 470 ASN A 326 CG OD1 ND2 REMARK 470 ILE A 327 CG1 CG2 CD1 REMARK 470 LEU A 354 CG CD1 CD2 REMARK 470 VAL A 357 CG1 CG2 REMARK 470 CYS A 367 SG REMARK 470 LYS A 369 CE NZ REMARK 470 GLN A 374 CD OE1 NE2 REMARK 470 ARG A 397 CZ NH1 NH2 REMARK 470 VAL A 409 CG1 CG2 REMARK 470 GLU A 412 CG CD OE1 OE2 REMARK 470 PHE A 413 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 428 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 137 45.93 -102.67 REMARK 500 TRP A 245 -80.87 -138.21 REMARK 500 SER A 300 48.89 -106.05 REMARK 500 ALA A 371 32.43 -99.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6WE A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KQF RELATED DB: PDB DBREF 5KR8 A 1 441 UNP P56817 BACE1_HUMAN 14 454 SEQADV 5KR8 MET A -13 UNP P56817 EXPRESSION TAG SEQADV 5KR8 ALA A -12 UNP P56817 EXPRESSION TAG SEQADV 5KR8 SER A -11 UNP P56817 EXPRESSION TAG SEQADV 5KR8 MET A -10 UNP P56817 EXPRESSION TAG SEQADV 5KR8 THR A -9 UNP P56817 EXPRESSION TAG SEQADV 5KR8 GLY A -8 UNP P56817 EXPRESSION TAG SEQADV 5KR8 GLY A -7 UNP P56817 EXPRESSION TAG SEQADV 5KR8 GLN A -6 UNP P56817 EXPRESSION TAG SEQADV 5KR8 GLN A -5 UNP P56817 EXPRESSION TAG SEQADV 5KR8 MET A -4 UNP P56817 EXPRESSION TAG SEQADV 5KR8 GLY A -3 UNP P56817 EXPRESSION TAG SEQADV 5KR8 ARG A -2 UNP P56817 EXPRESSION TAG SEQADV 5KR8 GLY A -1 UNP P56817 EXPRESSION TAG SEQADV 5KR8 SER A 0 UNP P56817 EXPRESSION TAG SEQRES 1 A 455 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG GLY SEQRES 2 A 455 SER ALA GLY VAL LEU PRO ALA HIS GLY THR GLN HIS GLY SEQRES 3 A 455 ILE ARG LEU PRO LEU ARG SER GLY LEU GLY GLY ALA PRO SEQRES 4 A 455 LEU GLY LEU ARG LEU PRO ARG GLU THR ASP GLU GLU PRO SEQRES 5 A 455 GLU GLU PRO GLY ARG ARG GLY SER PHE VAL GLU MET VAL SEQRES 6 A 455 ASP ASN LEU ARG GLY LYS SER GLY GLN GLY TYR TYR VAL SEQRES 7 A 455 GLU MET THR VAL GLY SER PRO PRO GLN THR LEU ASN ILE SEQRES 8 A 455 LEU VAL ASP THR GLY SER SER ASN PHE ALA VAL GLY ALA SEQRES 9 A 455 ALA PRO HIS PRO PHE LEU HIS ARG TYR TYR GLN ARG GLN SEQRES 10 A 455 LEU SER SER THR TYR ARG ASP LEU ARG LYS GLY VAL TYR SEQRES 11 A 455 VAL PRO TYR THR GLN GLY LYS TRP GLU GLY GLU LEU GLY SEQRES 12 A 455 THR ASP LEU VAL SER ILE PRO HIS GLY PRO ASN VAL THR SEQRES 13 A 455 VAL ARG ALA ASN ILE ALA ALA ILE THR GLU SER ASP LYS SEQRES 14 A 455 PHE PHE ILE ASN GLY SER ASN TRP GLU GLY ILE LEU GLY SEQRES 15 A 455 LEU ALA TYR ALA GLU ILE ALA ARG PRO ASP ASP SER LEU SEQRES 16 A 455 GLU PRO PHE PHE ASP SER LEU VAL LYS GLN THR HIS VAL SEQRES 17 A 455 PRO ASN LEU PHE SER LEU GLN LEU CYS GLY ALA GLY PHE SEQRES 18 A 455 PRO LEU ASN GLN SER GLU VAL LEU ALA SER VAL GLY GLY SEQRES 19 A 455 SER MET ILE ILE GLY GLY ILE ASP HIS SER LEU TYR THR SEQRES 20 A 455 GLY SER LEU TRP TYR THR PRO ILE ARG ARG GLU TRP TYR SEQRES 21 A 455 TYR GLU VAL ILE ILE VAL ARG VAL GLU ILE ASN GLY GLN SEQRES 22 A 455 ASP LEU LYS MET ASP CYS LYS GLU TYR ASN TYR ASP LYS SEQRES 23 A 455 SER ILE VAL ASP SER GLY THR THR ASN LEU ARG LEU PRO SEQRES 24 A 455 LYS LYS VAL PHE GLU ALA ALA VAL LYS SER ILE LYS ALA SEQRES 25 A 455 ALA SER SER THR GLU LYS PHE PRO ASP GLY PHE TRP LEU SEQRES 26 A 455 GLY GLU GLN LEU VAL CYS TRP GLN ALA GLY THR THR PRO SEQRES 27 A 455 TRP ASN ILE PHE PRO VAL ILE SER LEU TYR LEU MET GLY SEQRES 28 A 455 GLU VAL THR ASN GLN SER PHE ARG ILE THR ILE LEU PRO SEQRES 29 A 455 GLN GLN TYR LEU ARG PRO VAL GLU ASP VAL ALA THR SER SEQRES 30 A 455 GLN ASP ASP CYS TYR LYS PHE ALA ILE SER GLN SER SER SEQRES 31 A 455 THR GLY THR VAL MET GLY ALA VAL ILE MET GLU GLY PHE SEQRES 32 A 455 TYR VAL VAL PHE ASP ARG ALA ARG LYS ARG ILE GLY PHE SEQRES 33 A 455 ALA VAL SER ALA CYS HIS VAL HIS ASP GLU PHE ARG THR SEQRES 34 A 455 ALA ALA VAL GLU GLY PRO PHE VAL THR LEU ASP MET GLU SEQRES 35 A 455 ASP CYS GLY TYR ASN ILE PRO GLN THR ASP GLU SER THR HET IOD A 501 1 HET 6WE A 502 23 HETNAM IOD IODIDE ION HETNAM 6WE (4~{S},6~{S})-4-[2,4-BIS(FLUORANYL)PHENYL]-6-(3,5- HETNAM 2 6WE DIMETHYL-1,2-OXAZOL-4-YL)-4-METHYL-5,6-DIHYDRO-1,3- HETNAM 3 6WE THIAZIN-2-AMINE FORMUL 2 IOD I 1- FORMUL 3 6WE C16 H17 F2 N3 O S FORMUL 4 HOH *106(H2 O) HELIX 1 AA1 PHE A 47 VAL A 51 5 5 HELIX 2 AA2 GLN A 101 SER A 105 5 5 HELIX 3 AA3 TYR A 171 ALA A 175 5 5 HELIX 4 AA4 PRO A 183 THR A 192 1 10 HELIX 5 AA5 ASP A 228 SER A 230 5 3 HELIX 6 AA6 LYS A 266 TYR A 270 5 5 HELIX 7 AA7 LYS A 286 SER A 300 1 15 HELIX 8 AA8 PRO A 306 LEU A 311 1 6 HELIX 9 AA9 LEU A 349 TYR A 353 1 5 HELIX 10 AB1 GLY A 382 GLU A 387 1 6 HELIX 11 AB2 ARG A 395 ARG A 397 5 3 HELIX 12 AB3 ASP A 426 GLY A 431 5 6 SHEET 1 AA1 9 ARG A 109 PRO A 118 0 SHEET 2 AA1 9 LYS A 123 SER A 134 -1 O TRP A 124 N VAL A 117 SHEET 3 AA1 9 TYR A 63 VAL A 68 -1 N THR A 67 O SER A 134 SHEET 4 AA1 9 LEU A 54 GLY A 56 -1 N ARG A 55 O TYR A 63 SHEET 5 AA1 9 VAL A 218 ILE A 224 -1 O VAL A 218 N GLY A 56 SHEET 6 AA1 9 PHE A 198 CYS A 203 -1 N GLN A 201 O SER A 221 SHEET 7 AA1 9 PHE A 389 ASP A 394 -1 O PHE A 393 N PHE A 198 SHEET 8 AA1 9 ARG A 399 SER A 405 -1 O ALA A 403 N TYR A 390 SHEET 9 AA1 9 TYR A 232 PRO A 240 -1 N THR A 239 O ILE A 400 SHEET 1 AA213 ARG A 109 PRO A 118 0 SHEET 2 AA213 LYS A 123 SER A 134 -1 O TRP A 124 N VAL A 117 SHEET 3 AA213 VAL A 143 ASP A 154 -1 O GLU A 152 N GLU A 125 SHEET 4 AA213 PHE A 86 GLY A 89 1 N VAL A 88 O ILE A 150 SHEET 5 AA213 GLY A 165 GLY A 168 -1 O ILE A 166 N ALA A 87 SHEET 6 AA213 GLN A 73 ASP A 80 1 N LEU A 78 O LEU A 167 SHEET 7 AA213 TYR A 63 VAL A 68 -1 N MET A 66 O LEU A 75 SHEET 8 AA213 LEU A 54 GLY A 56 -1 N ARG A 55 O TYR A 63 SHEET 9 AA213 VAL A 218 ILE A 224 -1 O VAL A 218 N GLY A 56 SHEET 10 AA213 PHE A 198 CYS A 203 -1 N GLN A 201 O SER A 221 SHEET 11 AA213 PHE A 389 ASP A 394 -1 O PHE A 393 N PHE A 198 SHEET 12 AA213 ARG A 399 SER A 405 -1 O ALA A 403 N TYR A 390 SHEET 13 AA213 TYR A 232 PRO A 240 -1 N THR A 239 O ILE A 400 SHEET 1 AA3 5 GLN A 259 ASP A 260 0 SHEET 2 AA3 5 ILE A 251 ILE A 256 -1 N ILE A 256 O GLN A 259 SHEET 3 AA3 5 ILE A 331 MET A 336 -1 O TYR A 334 N ARG A 253 SHEET 4 AA3 5 GLN A 342 ILE A 348 -1 O ILE A 346 N LEU A 333 SHEET 5 AA3 5 ALA A 417 VAL A 423 -1 O GLU A 419 N ARG A 345 SHEET 1 AA4 4 SER A 273 VAL A 275 0 SHEET 2 AA4 4 THR A 379 MET A 381 1 O MET A 381 N ILE A 274 SHEET 3 AA4 4 LEU A 282 PRO A 285 -1 N ARG A 283 O VAL A 380 SHEET 4 AA4 4 ILE A 372 SER A 375 1 O SER A 373 N LEU A 284 SHEET 1 AA5 2 LEU A 354 PRO A 356 0 SHEET 2 AA5 2 TYR A 368 PHE A 370 -1 O LYS A 369 N ARG A 355 SSBOND 1 CYS A 203 CYS A 407 1555 1555 2.04 SSBOND 2 CYS A 265 CYS A 430 1555 1555 2.03 CISPEP 1 SER A 70 PRO A 71 0 -0.07 CISPEP 2 ARG A 176 PRO A 177 0 5.70 CISPEP 3 TYR A 270 ASP A 271 0 2.48 CISPEP 4 GLY A 420 PRO A 421 0 -2.62 SITE 1 AC1 1 SER A 153 SITE 1 AC2 11 LEU A 78 ASP A 80 TYR A 119 THR A 120 SITE 2 AC2 11 GLN A 121 PHE A 156 TRP A 163 ILE A 166 SITE 3 AC2 11 ASP A 276 GLY A 278 HOH A 610 CRYST1 102.059 102.059 170.843 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009798 0.005657 0.000000 0.00000 SCALE2 0.000000 0.011314 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005853 0.00000