data_5KRB # _entry.id 5KRB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5KRB pdb_00005krb 10.2210/pdb5krb/pdb WWPDB D_1000222644 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-11-09 2 'Structure model' 1 1 2017-01-04 3 'Structure model' 1 2 2017-04-05 4 'Structure model' 1 3 2017-09-20 5 'Structure model' 1 4 2019-12-25 6 'Structure model' 1 5 2024-03-06 7 'Structure model' 1 6 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Author supporting evidence' 4 5 'Structure model' 'Author supporting evidence' 5 6 'Structure model' 'Data collection' 6 6 'Structure model' 'Database references' 7 7 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_audit_support 2 5 'Structure model' pdbx_audit_support 3 6 'Structure model' chem_comp_atom 4 6 'Structure model' chem_comp_bond 5 6 'Structure model' database_2 6 7 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_audit_support.funding_organization' 2 5 'Structure model' '_pdbx_audit_support.funding_organization' 3 6 'Structure model' '_database_2.pdbx_DOI' 4 6 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5KRB _pdbx_database_status.recvd_initial_deposition_date 2016-07-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Weikum, E.R.' 1 'Ortlund, E.A.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Mol. Biol.' _citation.journal_id_ASTM JMOBAK _citation.journal_id_CSD 0070 _citation.journal_id_ISSN 1089-8638 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 428 _citation.language ? _citation.page_first 4981 _citation.page_last 4992 _citation.title ;A Structural Investigation into Oct4 Regulation by Orphan Nuclear Receptors, Germ Cell Nuclear Factor (GCNF), and Liver Receptor Homolog-1 (LRH-1). ; _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jmb.2016.10.025 _citation.pdbx_database_id_PubMed 27984042 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Weikum, E.R.' 1 ? primary 'Tuntland, M.L.' 2 ? primary 'Murphy, M.N.' 3 ? primary 'Ortlund, E.A.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*GP*AP*GP*GP*TP*CP*AP*AP*GP*GP*CP*TP*AP*GP*A)-3') ; 4996.268 1 ? ? ? ? 2 polymer man 'Nuclear receptor subfamily 6 group A member 1' 9747.570 2 ? C104S ? ? 3 polymer syn ;DNA (5'-D(*TP*CP*TP*AP*GP*CP*CP*TP*TP*GP*AP*CP*CP*TP*CP*T)-3') ; 4800.115 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 4 ? ? ? ? 5 water nat water 18.015 43 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'Germ cell nuclear factor,mGCNF,Retinoid receptor-related testis-specific receptor,RTR' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DG)(DA)(DG)(DG)(DT)(DC)(DA)(DA)(DG)(DG)(DC)(DT)(DA)(DG)(DA)' AGAGGTCAAGGCTAGA A ? 2 'polypeptide(L)' no no ;QRTCLICGDRATGLHYGIISCEGCKGFFKRSISNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKCLQMGMNRKAIREDGMP GGRN ; ;QRTCLICGDRATGLHYGIISCEGCKGFFKRSISNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKCLQMGMNRKAIREDGMP GGRN ; B,G ? 3 polydeoxyribonucleotide no no '(DT)(DC)(DT)(DA)(DG)(DC)(DC)(DT)(DT)(DG)(DA)(DC)(DC)(DT)(DC)(DT)' TCTAGCCTTGACCTCT E ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ZINC ION' ZN 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DG n 1 3 DA n 1 4 DG n 1 5 DG n 1 6 DT n 1 7 DC n 1 8 DA n 1 9 DA n 1 10 DG n 1 11 DG n 1 12 DC n 1 13 DT n 1 14 DA n 1 15 DG n 1 16 DA n 2 1 GLN n 2 2 ARG n 2 3 THR n 2 4 CYS n 2 5 LEU n 2 6 ILE n 2 7 CYS n 2 8 GLY n 2 9 ASP n 2 10 ARG n 2 11 ALA n 2 12 THR n 2 13 GLY n 2 14 LEU n 2 15 HIS n 2 16 TYR n 2 17 GLY n 2 18 ILE n 2 19 ILE n 2 20 SER n 2 21 CYS n 2 22 GLU n 2 23 GLY n 2 24 CYS n 2 25 LYS n 2 26 GLY n 2 27 PHE n 2 28 PHE n 2 29 LYS n 2 30 ARG n 2 31 SER n 2 32 ILE n 2 33 SER n 2 34 ASN n 2 35 LYS n 2 36 ARG n 2 37 VAL n 2 38 TYR n 2 39 ARG n 2 40 CYS n 2 41 SER n 2 42 ARG n 2 43 ASP n 2 44 LYS n 2 45 ASN n 2 46 CYS n 2 47 VAL n 2 48 MET n 2 49 SER n 2 50 ARG n 2 51 LYS n 2 52 GLN n 2 53 ARG n 2 54 ASN n 2 55 ARG n 2 56 CYS n 2 57 GLN n 2 58 TYR n 2 59 CYS n 2 60 ARG n 2 61 LEU n 2 62 LEU n 2 63 LYS n 2 64 CYS n 2 65 LEU n 2 66 GLN n 2 67 MET n 2 68 GLY n 2 69 MET n 2 70 ASN n 2 71 ARG n 2 72 LYS n 2 73 ALA n 2 74 ILE n 2 75 ARG n 2 76 GLU n 2 77 ASP n 2 78 GLY n 2 79 MET n 2 80 PRO n 2 81 GLY n 2 82 GLY n 2 83 ARG n 2 84 ASN n 3 1 DT n 3 2 DC n 3 3 DT n 3 4 DA n 3 5 DG n 3 6 DC n 3 7 DC n 3 8 DT n 3 9 DT n 3 10 DG n 3 11 DA n 3 12 DC n 3 13 DC n 3 14 DT n 3 15 DC n 3 16 DT n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 84 _entity_src_gen.gene_src_common_name Mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Nr6a1, Gcnf' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant pLysS _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type pMCSG7 _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'LIC MBP' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 16 'Mus musculus' ? 10090 ? 3 1 sample 1 16 'Mus musculus' ? 10090 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 105 105 DA DA A . n A 1 2 DG 2 106 106 DG DG A . n A 1 3 DA 3 107 107 DA DA A . n A 1 4 DG 4 108 108 DG DG A . n A 1 5 DG 5 109 109 DG DG A . n A 1 6 DT 6 110 110 DT DT A . n A 1 7 DC 7 111 111 DC DC A . n A 1 8 DA 8 112 112 DA DA A . n A 1 9 DA 9 113 113 DA DA A . n A 1 10 DG 10 114 114 DG DG A . n A 1 11 DG 11 115 115 DG DG A . n A 1 12 DC 12 116 116 DC DC A . n A 1 13 DT 13 117 117 DT DT A . n A 1 14 DA 14 118 118 DA DA A . n A 1 15 DG 15 119 119 DG DG A . n A 1 16 DA 16 120 120 DA DA A . n B 2 1 GLN 1 72 72 GLN GLN B . n B 2 2 ARG 2 73 73 ARG ARG B . n B 2 3 THR 3 74 74 THR THR B . n B 2 4 CYS 4 75 75 CYS CYS B . n B 2 5 LEU 5 76 76 LEU LEU B . n B 2 6 ILE 6 77 77 ILE ILE B . n B 2 7 CYS 7 78 78 CYS CYS B . n B 2 8 GLY 8 79 79 GLY GLY B . n B 2 9 ASP 9 80 80 ASP ASP B . n B 2 10 ARG 10 81 81 ARG ARG B . n B 2 11 ALA 11 82 82 ALA ALA B . n B 2 12 THR 12 83 83 THR THR B . n B 2 13 GLY 13 84 84 GLY GLY B . n B 2 14 LEU 14 85 85 LEU LEU B . n B 2 15 HIS 15 86 86 HIS HIS B . n B 2 16 TYR 16 87 87 TYR TYR B . n B 2 17 GLY 17 88 88 GLY GLY B . n B 2 18 ILE 18 89 89 ILE ILE B . n B 2 19 ILE 19 90 90 ILE ILE B . n B 2 20 SER 20 91 91 SER SER B . n B 2 21 CYS 21 92 92 CYS CYS B . n B 2 22 GLU 22 93 93 GLU GLU B . n B 2 23 GLY 23 94 94 GLY GLY B . n B 2 24 CYS 24 95 95 CYS CYS B . n B 2 25 LYS 25 96 96 LYS LYS B . n B 2 26 GLY 26 97 97 GLY GLY B . n B 2 27 PHE 27 98 98 PHE PHE B . n B 2 28 PHE 28 99 99 PHE PHE B . n B 2 29 LYS 29 100 100 LYS LYS B . n B 2 30 ARG 30 101 101 ARG ARG B . n B 2 31 SER 31 102 102 SER SER B . n B 2 32 ILE 32 103 103 ILE ILE B . n B 2 33 SER 33 104 104 SER SER B . n B 2 34 ASN 34 105 105 ASN ASN B . n B 2 35 LYS 35 106 106 LYS LYS B . n B 2 36 ARG 36 107 107 ARG ARG B . n B 2 37 VAL 37 108 108 VAL VAL B . n B 2 38 TYR 38 109 109 TYR TYR B . n B 2 39 ARG 39 110 110 ARG ARG B . n B 2 40 CYS 40 111 111 CYS CYS B . n B 2 41 SER 41 112 112 SER SER B . n B 2 42 ARG 42 113 113 ARG ARG B . n B 2 43 ASP 43 114 114 ASP ASP B . n B 2 44 LYS 44 115 115 LYS LYS B . n B 2 45 ASN 45 116 116 ASN ASN B . n B 2 46 CYS 46 117 117 CYS CYS B . n B 2 47 VAL 47 118 118 VAL VAL B . n B 2 48 MET 48 119 119 MET MET B . n B 2 49 SER 49 120 120 SER SER B . n B 2 50 ARG 50 121 121 ARG ARG B . n B 2 51 LYS 51 122 122 LYS LYS B . n B 2 52 GLN 52 123 123 GLN GLN B . n B 2 53 ARG 53 124 124 ARG ARG B . n B 2 54 ASN 54 125 125 ASN ASN B . n B 2 55 ARG 55 126 126 ARG ARG B . n B 2 56 CYS 56 127 127 CYS CYS B . n B 2 57 GLN 57 128 128 GLN GLN B . n B 2 58 TYR 58 129 129 TYR TYR B . n B 2 59 CYS 59 130 130 CYS CYS B . n B 2 60 ARG 60 131 131 ARG ARG B . n B 2 61 LEU 61 132 132 LEU LEU B . n B 2 62 LEU 62 133 133 LEU LEU B . n B 2 63 LYS 63 134 134 LYS LYS B . n B 2 64 CYS 64 135 135 CYS CYS B . n B 2 65 LEU 65 136 136 LEU LEU B . n B 2 66 GLN 66 137 137 GLN GLN B . n B 2 67 MET 67 138 138 MET MET B . n B 2 68 GLY 68 139 139 GLY GLY B . n B 2 69 MET 69 140 140 MET MET B . n B 2 70 ASN 70 141 141 ASN ASN B . n B 2 71 ARG 71 142 142 ARG ARG B . n B 2 72 LYS 72 143 143 LYS LYS B . n B 2 73 ALA 73 144 144 ALA ALA B . n B 2 74 ILE 74 145 145 ILE ILE B . n B 2 75 ARG 75 146 ? ? ? B . n B 2 76 GLU 76 147 ? ? ? B . n B 2 77 ASP 77 148 ? ? ? B . n B 2 78 GLY 78 149 ? ? ? B . n B 2 79 MET 79 150 ? ? ? B . n B 2 80 PRO 80 151 ? ? ? B . n B 2 81 GLY 81 152 ? ? ? B . n B 2 82 GLY 82 153 ? ? ? B . n B 2 83 ARG 83 154 ? ? ? B . n B 2 84 ASN 84 155 ? ? ? B . n C 3 1 DT 1 89 89 DT DT E . n C 3 2 DC 2 90 90 DC DC E . n C 3 3 DT 3 91 91 DT DT E . n C 3 4 DA 4 92 92 DA DA E . n C 3 5 DG 5 93 93 DG DG E . n C 3 6 DC 6 94 94 DC DC E . n C 3 7 DC 7 95 95 DC DC E . n C 3 8 DT 8 96 96 DT DT E . n C 3 9 DT 9 97 97 DT DT E . n C 3 10 DG 10 98 98 DG DG E . n C 3 11 DA 11 99 99 DA DA E . n C 3 12 DC 12 100 100 DC DC E . n C 3 13 DC 13 101 101 DC DC E . n C 3 14 DT 14 102 102 DT DT E . n C 3 15 DC 15 103 103 DC DC E . n C 3 16 DT 16 104 104 DT DT E . n D 2 1 GLN 1 72 ? ? ? G . n D 2 2 ARG 2 73 ? ? ? G . n D 2 3 THR 3 74 74 THR THR G . n D 2 4 CYS 4 75 75 CYS CYS G . n D 2 5 LEU 5 76 76 LEU LEU G . n D 2 6 ILE 6 77 77 ILE ILE G . n D 2 7 CYS 7 78 78 CYS CYS G . n D 2 8 GLY 8 79 79 GLY GLY G . n D 2 9 ASP 9 80 80 ASP ASP G . n D 2 10 ARG 10 81 81 ARG ARG G . n D 2 11 ALA 11 82 82 ALA ALA G . n D 2 12 THR 12 83 83 THR THR G . n D 2 13 GLY 13 84 84 GLY GLY G . n D 2 14 LEU 14 85 85 LEU LEU G . n D 2 15 HIS 15 86 86 HIS HIS G . n D 2 16 TYR 16 87 87 TYR TYR G . n D 2 17 GLY 17 88 88 GLY GLY G . n D 2 18 ILE 18 89 89 ILE ILE G . n D 2 19 ILE 19 90 90 ILE ILE G . n D 2 20 SER 20 91 91 SER SER G . n D 2 21 CYS 21 92 92 CYS CYS G . n D 2 22 GLU 22 93 93 GLU GLU G . n D 2 23 GLY 23 94 94 GLY GLY G . n D 2 24 CYS 24 95 95 CYS CYS G . n D 2 25 LYS 25 96 96 LYS LYS G . n D 2 26 GLY 26 97 97 GLY GLY G . n D 2 27 PHE 27 98 98 PHE PHE G . n D 2 28 PHE 28 99 99 PHE PHE G . n D 2 29 LYS 29 100 100 LYS LYS G . n D 2 30 ARG 30 101 101 ARG ARG G . n D 2 31 SER 31 102 102 SER SER G . n D 2 32 ILE 32 103 103 ILE ILE G . n D 2 33 SER 33 104 104 SER SER G . n D 2 34 ASN 34 105 105 ASN ASN G . n D 2 35 LYS 35 106 106 LYS LYS G . n D 2 36 ARG 36 107 107 ARG ARG G . n D 2 37 VAL 37 108 108 VAL VAL G . n D 2 38 TYR 38 109 109 TYR TYR G . n D 2 39 ARG 39 110 110 ARG ARG G . n D 2 40 CYS 40 111 111 CYS CYS G . n D 2 41 SER 41 112 112 SER SER G . n D 2 42 ARG 42 113 113 ARG ARG G . n D 2 43 ASP 43 114 114 ASP ASP G . n D 2 44 LYS 44 115 115 LYS LYS G . n D 2 45 ASN 45 116 116 ASN ASN G . n D 2 46 CYS 46 117 117 CYS CYS G . n D 2 47 VAL 47 118 118 VAL VAL G . n D 2 48 MET 48 119 119 MET MET G . n D 2 49 SER 49 120 120 SER SER G . n D 2 50 ARG 50 121 121 ARG ARG G . n D 2 51 LYS 51 122 122 LYS LYS G . n D 2 52 GLN 52 123 123 GLN GLN G . n D 2 53 ARG 53 124 124 ARG ARG G . n D 2 54 ASN 54 125 125 ASN ASN G . n D 2 55 ARG 55 126 126 ARG ARG G . n D 2 56 CYS 56 127 127 CYS CYS G . n D 2 57 GLN 57 128 128 GLN GLN G . n D 2 58 TYR 58 129 129 TYR TYR G . n D 2 59 CYS 59 130 130 CYS CYS G . n D 2 60 ARG 60 131 131 ARG ARG G . n D 2 61 LEU 61 132 132 LEU LEU G . n D 2 62 LEU 62 133 133 LEU LEU G . n D 2 63 LYS 63 134 134 LYS LYS G . n D 2 64 CYS 64 135 135 CYS CYS G . n D 2 65 LEU 65 136 136 LEU LEU G . n D 2 66 GLN 66 137 137 GLN GLN G . n D 2 67 MET 67 138 138 MET MET G . n D 2 68 GLY 68 139 139 GLY GLY G . n D 2 69 MET 69 140 140 MET MET G . n D 2 70 ASN 70 141 141 ASN ASN G . n D 2 71 ARG 71 142 142 ARG ARG G . n D 2 72 LYS 72 143 143 LYS LYS G . n D 2 73 ALA 73 144 144 ALA ALA G . n D 2 74 ILE 74 145 145 ILE ILE G . n D 2 75 ARG 75 146 146 ARG ARG G . n D 2 76 GLU 76 147 147 GLU GLU G . n D 2 77 ASP 77 148 148 ASP ASP G . n D 2 78 GLY 78 149 149 GLY GLY G . n D 2 79 MET 79 150 150 MET MET G . n D 2 80 PRO 80 151 151 PRO PRO G . n D 2 81 GLY 81 152 152 GLY GLY G . n D 2 82 GLY 82 153 153 GLY GLY G . n D 2 83 ARG 83 154 154 ARG ARG G . n D 2 84 ASN 84 155 155 ASN ASN G . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 ZN 1 201 598 ZN ZN B . F 4 ZN 1 202 599 ZN ZN B . G 4 ZN 1 201 598 ZN ZN G . H 4 ZN 1 202 599 ZN ZN G . I 5 HOH 1 201 5 HOH HOH A . I 5 HOH 2 202 2 HOH HOH A . I 5 HOH 3 203 32 HOH HOH A . I 5 HOH 4 204 16 HOH HOH A . I 5 HOH 5 205 17 HOH HOH A . I 5 HOH 6 206 26 HOH HOH A . I 5 HOH 7 207 40 HOH HOH A . I 5 HOH 8 208 37 HOH HOH A . I 5 HOH 9 209 7 HOH HOH A . I 5 HOH 10 210 38 HOH HOH A . I 5 HOH 11 211 4 HOH HOH A . J 5 HOH 1 301 6 HOH HOH B . J 5 HOH 2 302 11 HOH HOH B . J 5 HOH 3 303 12 HOH HOH B . J 5 HOH 4 304 10 HOH HOH B . J 5 HOH 5 305 25 HOH HOH B . J 5 HOH 6 306 14 HOH HOH B . J 5 HOH 7 307 33 HOH HOH B . J 5 HOH 8 308 22 HOH HOH B . J 5 HOH 9 309 8 HOH HOH B . J 5 HOH 10 310 24 HOH HOH B . J 5 HOH 11 311 36 HOH HOH B . J 5 HOH 12 312 31 HOH HOH B . J 5 HOH 13 313 43 HOH HOH B . J 5 HOH 14 314 41 HOH HOH B . K 5 HOH 1 201 20 HOH HOH E . K 5 HOH 2 202 19 HOH HOH E . K 5 HOH 3 203 9 HOH HOH E . K 5 HOH 4 204 15 HOH HOH E . K 5 HOH 5 205 21 HOH HOH E . K 5 HOH 6 206 29 HOH HOH E . K 5 HOH 7 207 30 HOH HOH E . K 5 HOH 8 208 28 HOH HOH E . K 5 HOH 9 209 3 HOH HOH E . L 5 HOH 1 301 1 HOH HOH G . L 5 HOH 2 302 23 HOH HOH G . L 5 HOH 3 303 34 HOH HOH G . L 5 HOH 4 304 18 HOH HOH G . L 5 HOH 5 305 27 HOH HOH G . L 5 HOH 6 306 13 HOH HOH G . L 5 HOH 7 307 42 HOH HOH G . L 5 HOH 8 308 35 HOH HOH G . L 5 HOH 9 309 39 HOH HOH G . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10.1_2155 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.20 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 5 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 6 # _cell.length_a 53.649 _cell.length_b 69.469 _cell.length_c 84.536 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 5KRB _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 5KRB _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5KRB _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.75 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 55.21 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M Tris pH 8.5, 20% PEG 3350, 3% glycerol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 80 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-01-06 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.d_resolution_high 2.100 _reflns.d_resolution_low 50.000 _reflns.pdbx_number_measured_all 95317 _reflns.number_obs 18322 _reflns.pdbx_Rmerge_I_obs 0.152 _reflns.pdbx_netI_over_av_sigmaI 17.342 _reflns.pdbx_netI_over_sigmaI 8.900 _reflns.pdbx_chi_squared 1.695 _reflns.pdbx_redundancy 5.200 _reflns.percent_possible_obs 96.200 _reflns.pdbx_Rrim_I_all 0.167 _reflns.pdbx_Rpim_I_all 0.069 _reflns.B_iso_Wilson_estimate 46.640 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5KRB _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 2.100 2.180 ? ? ? 0 0.656 ? ? 0.909 3.500 ? ? ? 1486 ? ? ? ? 80.200 0.758 0.371 0.690 1 2 2.180 2.260 ? ? ? 0 0.566 ? ? 1.036 3.800 ? ? ? 1641 ? ? ? ? 87.900 0.646 0.306 0.798 1 3 2.260 2.370 ? ? ? 0 0.466 ? ? 1.160 4.000 ? ? ? 1785 ? ? ? ? 95.400 0.532 0.251 0.845 1 4 2.370 2.490 ? ? ? 0 0.404 ? ? 1.346 4.300 ? ? ? 1866 ? ? ? ? 99.100 0.457 0.210 0.904 1 5 2.490 2.650 ? ? ? 0 0.376 ? ? 1.495 4.700 ? ? ? 1872 ? ? ? ? 99.900 0.421 0.186 0.929 1 6 2.650 2.850 ? ? ? 0 0.403 ? ? 1.542 5.600 ? ? ? 1894 ? ? ? ? 99.800 0.444 0.184 0.937 1 7 2.850 3.140 ? ? ? 0 0.305 ? ? 1.772 6.400 ? ? ? 1896 ? ? ? ? 99.700 0.332 0.131 0.975 1 8 3.140 3.590 ? ? ? 0 0.153 ? ? 2.067 6.400 ? ? ? 1903 ? ? ? ? 99.800 0.169 0.070 0.991 1 9 3.590 4.520 ? ? ? 0 0.130 ? ? 2.176 6.400 ? ? ? 1939 ? ? ? ? 99.800 0.143 0.057 0.982 1 10 4.520 50.000 ? ? ? 0 0.127 ? ? 2.073 6.200 ? ? ? 2040 ? ? ? ? 99.400 0.140 0.057 0.978 # _refine.entry_id 5KRB _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 2.1010 _refine.ls_d_res_low 37.9440 _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 95.8300 _refine.ls_number_reflns_obs 18228 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2183 _refine.ls_R_factor_R_work 0.2156 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2683 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.9900 _refine.ls_number_reflns_R_free 910 _refine.ls_number_reflns_R_work 17318 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 61.9231 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.2600 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'Previous low resolution structure' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 163.510 _refine.B_iso_min 36.750 _refine.pdbx_overall_phase_error 33.9700 _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.1010 _refine_hist.d_res_low 37.9440 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 43 _refine_hist.number_atoms_total 1941 _refine_hist.pdbx_number_residues_total 188 _refine_hist.pdbx_B_iso_mean_ligand 51.78 _refine_hist.pdbx_B_iso_mean_solvent 54.58 _refine_hist.pdbx_number_atoms_protein 1244 _refine_hist.pdbx_number_atoms_nucleic_acid 650 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' f_bond_d 1983 0.003 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 2775 0.565 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 295 0.036 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 246 0.002 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 1107 18.841 ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.R_factor_obs 2.1005 2.2112 7 81.0000 2037 . 0.3117 0.3400 . 108 . 2145 . 'X-RAY DIFFRACTION' . 2.2112 2.3498 7 93.0000 2365 . 0.2914 0.3248 . 123 . 2488 . 'X-RAY DIFFRACTION' . 2.3498 2.5312 7 99.0000 2524 . 0.2767 0.3065 . 133 . 2657 . 'X-RAY DIFFRACTION' . 2.5312 2.7858 7 100.0000 2555 . 0.2662 0.3243 . 135 . 2690 . 'X-RAY DIFFRACTION' . 2.7858 3.1887 7 100.0000 2556 . 0.2816 0.3453 . 135 . 2691 . 'X-RAY DIFFRACTION' . 3.1887 4.0168 7 98.0000 2574 . 0.2063 0.2944 . 134 . 2708 . 'X-RAY DIFFRACTION' . 4.0168 37.9497 7 99.0000 2707 . 0.1687 0.2096 . 142 . 2849 . 'X-RAY DIFFRACTION' . # _struct.entry_id 5KRB _struct.title 'GCNF DNA Binding Domain - Oct4 DR0 Complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5KRB _struct_keywords.text 'Nuclear Receptor, Transcription Factor, DNA Binding, Development, Protein-DNA complex, transcription-dna complex' _struct_keywords.pdbx_keywords transcription/dna # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 2 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 5 ? J N N 5 ? K N N 5 ? L N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 5KRB 5KRB ? 1 ? 1 2 UNP NR6A1_MOUSE Q64249 ? 2 ;QRTCLICGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKCLQMGMNRKAIREDGMP GGRN ; 72 3 PDB 5KRB 5KRB ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5KRB A 1 ? 16 ? 5KRB 105 ? 120 ? 105 120 2 2 5KRB B 1 ? 84 ? Q64249 72 ? 155 ? 72 155 3 3 5KRB E 1 ? 16 ? 5KRB 89 ? 104 ? 89 104 4 2 5KRB G 1 ? 84 ? Q64249 72 ? 155 ? 72 155 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 5KRB SER B 33 ? UNP Q64249 CYS 104 'engineered mutation' 104 1 4 5KRB SER G 33 ? UNP Q64249 CYS 104 'engineered mutation' 104 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5320 ? 1 MORE -30 ? 1 'SSA (A^2)' 13200 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 CYS B 21 ? ASN B 34 ? CYS B 92 ASN B 105 1 ? 14 HELX_P HELX_P2 AA2 GLN B 52 ? ARG B 55 ? GLN B 123 ARG B 126 5 ? 4 HELX_P HELX_P3 AA3 CYS B 56 ? GLY B 68 ? CYS B 127 GLY B 139 1 ? 13 HELX_P HELX_P4 AA4 ASN B 70 ? ILE B 74 ? ASN B 141 ILE B 145 5 ? 5 HELX_P HELX_P5 AA5 CYS D 21 ? ASN D 34 ? CYS G 92 ASN G 105 1 ? 14 HELX_P HELX_P6 AA6 GLN D 52 ? ARG D 55 ? GLN G 123 ARG G 126 5 ? 4 HELX_P HELX_P7 AA7 CYS D 56 ? GLY D 68 ? CYS G 127 GLY G 139 1 ? 13 HELX_P HELX_P8 AA8 ASN D 70 ? ILE D 74 ? ASN G 141 ILE G 145 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B CYS 4 SG ? ? ? 1_555 E ZN . ZN ? ? B CYS 75 B ZN 201 1_555 ? ? ? ? ? ? ? 2.353 ? ? metalc2 metalc ? ? B CYS 7 SG ? ? ? 1_555 E ZN . ZN ? ? B CYS 78 B ZN 201 1_555 ? ? ? ? ? ? ? 2.289 ? ? metalc3 metalc ? ? B CYS 21 SG ? ? ? 1_555 E ZN . ZN ? ? B CYS 92 B ZN 201 1_555 ? ? ? ? ? ? ? 2.288 ? ? metalc4 metalc ? ? B CYS 24 SG ? ? ? 1_555 E ZN . ZN ? ? B CYS 95 B ZN 201 1_555 ? ? ? ? ? ? ? 2.391 ? ? metalc5 metalc ? ? B CYS 40 SG ? ? ? 1_555 F ZN . ZN ? ? B CYS 111 B ZN 202 1_555 ? ? ? ? ? ? ? 2.488 ? ? metalc6 metalc ? ? B CYS 46 SG ? ? ? 1_555 F ZN . ZN ? ? B CYS 117 B ZN 202 1_555 ? ? ? ? ? ? ? 2.350 ? ? metalc7 metalc ? ? B CYS 56 SG ? ? ? 1_555 F ZN . ZN ? ? B CYS 127 B ZN 202 1_555 ? ? ? ? ? ? ? 2.245 ? ? metalc8 metalc ? ? B CYS 59 SG ? ? ? 1_555 F ZN . ZN ? ? B CYS 130 B ZN 202 1_555 ? ? ? ? ? ? ? 2.363 ? ? metalc9 metalc ? ? D CYS 4 SG ? ? ? 1_555 G ZN . ZN ? ? G CYS 75 G ZN 201 1_555 ? ? ? ? ? ? ? 2.413 ? ? metalc10 metalc ? ? D CYS 7 SG ? ? ? 1_555 G ZN . ZN ? ? G CYS 78 G ZN 201 1_555 ? ? ? ? ? ? ? 2.354 ? ? metalc11 metalc ? ? D CYS 21 SG ? ? ? 1_555 G ZN . ZN ? ? G CYS 92 G ZN 201 1_555 ? ? ? ? ? ? ? 2.433 ? ? metalc12 metalc ? ? D CYS 24 SG ? ? ? 1_555 G ZN . ZN ? ? G CYS 95 G ZN 201 1_555 ? ? ? ? ? ? ? 2.452 ? ? metalc13 metalc ? ? D CYS 40 SG ? ? ? 1_555 H ZN . ZN ? ? G CYS 111 G ZN 202 1_555 ? ? ? ? ? ? ? 2.391 ? ? metalc14 metalc ? ? D CYS 46 SG ? ? ? 1_555 H ZN . ZN ? ? G CYS 117 G ZN 202 1_555 ? ? ? ? ? ? ? 2.559 ? ? metalc15 metalc ? ? D CYS 56 SG ? ? ? 1_555 H ZN . ZN ? ? G CYS 127 G ZN 202 1_555 ? ? ? ? ? ? ? 2.250 ? ? metalc16 metalc ? ? D CYS 59 SG ? ? ? 1_555 H ZN . ZN ? ? G CYS 130 G ZN 202 1_555 ? ? ? ? ? ? ? 2.453 ? ? hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 C DT 16 N3 ? ? A DA 105 E DT 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 C DT 16 O4 ? ? A DA 105 E DT 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 C DC 15 N3 ? ? A DG 106 E DC 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 C DC 15 O2 ? ? A DG 106 E DC 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 O6 ? ? ? 1_555 C DC 15 N4 ? ? A DG 106 E DC 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 C DT 14 N3 ? ? A DA 107 E DT 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 C DT 14 O4 ? ? A DA 107 E DT 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 C DC 13 N3 ? ? A DG 108 E DC 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 C DC 13 O2 ? ? A DG 108 E DC 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 C DC 13 N4 ? ? A DG 108 E DC 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N1 ? ? ? 1_555 C DC 12 N3 ? ? A DG 109 E DC 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N2 ? ? ? 1_555 C DC 12 O2 ? ? A DG 109 E DC 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 O6 ? ? ? 1_555 C DC 12 N4 ? ? A DG 109 E DC 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 6 N3 ? ? ? 1_555 C DA 11 N1 ? ? A DT 110 E DA 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 6 O4 ? ? ? 1_555 C DA 11 N6 ? ? A DT 110 E DA 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N3 ? ? ? 1_555 C DG 10 N1 ? ? A DC 111 E DG 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N4 ? ? ? 1_555 C DG 10 O6 ? ? A DC 111 E DG 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 O2 ? ? ? 1_555 C DG 10 N2 ? ? A DC 111 E DG 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 8 N1 ? ? ? 1_555 C DT 9 N3 ? ? A DA 112 E DT 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 8 N6 ? ? ? 1_555 C DT 9 O4 ? ? A DA 112 E DT 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 9 N1 ? ? ? 1_555 C DT 8 N3 ? ? A DA 113 E DT 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 9 N6 ? ? ? 1_555 C DT 8 O4 ? ? A DA 113 E DT 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 N1 ? ? ? 1_555 C DC 7 N3 ? ? A DG 114 E DC 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N2 ? ? ? 1_555 C DC 7 O2 ? ? A DG 114 E DC 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 O6 ? ? ? 1_555 C DC 7 N4 ? ? A DG 114 E DC 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 11 N1 ? ? ? 1_555 C DC 6 N3 ? ? A DG 115 E DC 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 11 N2 ? ? ? 1_555 C DC 6 O2 ? ? A DG 115 E DC 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 11 O6 ? ? ? 1_555 C DC 6 N4 ? ? A DG 115 E DC 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 12 N3 ? ? ? 1_555 C DG 5 N1 ? ? A DC 116 E DG 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 12 N4 ? ? ? 1_555 C DG 5 O6 ? ? A DC 116 E DG 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 12 O2 ? ? ? 1_555 C DG 5 N2 ? ? A DC 116 E DG 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DT 13 N3 ? ? ? 1_555 C DA 4 N1 ? ? A DT 117 E DA 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DT 13 O4 ? ? ? 1_555 C DA 4 N6 ? ? A DT 117 E DA 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DA 14 N1 ? ? ? 1_555 C DT 3 N3 ? ? A DA 118 E DT 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DA 14 N6 ? ? ? 1_555 C DT 3 O4 ? ? A DA 118 E DT 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DG 15 N1 ? ? ? 1_555 C DC 2 N3 ? ? A DG 119 E DC 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DG 15 N2 ? ? ? 1_555 C DC 2 O2 ? ? A DG 119 E DC 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DG 15 O6 ? ? ? 1_555 C DC 2 N4 ? ? A DG 119 E DC 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DA 16 N6 ? ? ? 1_555 C DT 1 O4 ? ? A DA 120 E DT 89 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? B CYS 4 ? B CYS 75 ? 1_555 ZN ? E ZN . ? B ZN 201 ? 1_555 SG ? B CYS 7 ? B CYS 78 ? 1_555 108.4 ? 2 SG ? B CYS 4 ? B CYS 75 ? 1_555 ZN ? E ZN . ? B ZN 201 ? 1_555 SG ? B CYS 21 ? B CYS 92 ? 1_555 110.9 ? 3 SG ? B CYS 7 ? B CYS 78 ? 1_555 ZN ? E ZN . ? B ZN 201 ? 1_555 SG ? B CYS 21 ? B CYS 92 ? 1_555 105.0 ? 4 SG ? B CYS 4 ? B CYS 75 ? 1_555 ZN ? E ZN . ? B ZN 201 ? 1_555 SG ? B CYS 24 ? B CYS 95 ? 1_555 111.7 ? 5 SG ? B CYS 7 ? B CYS 78 ? 1_555 ZN ? E ZN . ? B ZN 201 ? 1_555 SG ? B CYS 24 ? B CYS 95 ? 1_555 116.4 ? 6 SG ? B CYS 21 ? B CYS 92 ? 1_555 ZN ? E ZN . ? B ZN 201 ? 1_555 SG ? B CYS 24 ? B CYS 95 ? 1_555 104.1 ? 7 SG ? B CYS 40 ? B CYS 111 ? 1_555 ZN ? F ZN . ? B ZN 202 ? 1_555 SG ? B CYS 46 ? B CYS 117 ? 1_555 106.1 ? 8 SG ? B CYS 40 ? B CYS 111 ? 1_555 ZN ? F ZN . ? B ZN 202 ? 1_555 SG ? B CYS 56 ? B CYS 127 ? 1_555 106.0 ? 9 SG ? B CYS 46 ? B CYS 117 ? 1_555 ZN ? F ZN . ? B ZN 202 ? 1_555 SG ? B CYS 56 ? B CYS 127 ? 1_555 107.4 ? 10 SG ? B CYS 40 ? B CYS 111 ? 1_555 ZN ? F ZN . ? B ZN 202 ? 1_555 SG ? B CYS 59 ? B CYS 130 ? 1_555 113.3 ? 11 SG ? B CYS 46 ? B CYS 117 ? 1_555 ZN ? F ZN . ? B ZN 202 ? 1_555 SG ? B CYS 59 ? B CYS 130 ? 1_555 115.4 ? 12 SG ? B CYS 56 ? B CYS 127 ? 1_555 ZN ? F ZN . ? B ZN 202 ? 1_555 SG ? B CYS 59 ? B CYS 130 ? 1_555 108.2 ? 13 SG ? D CYS 4 ? G CYS 75 ? 1_555 ZN ? G ZN . ? G ZN 201 ? 1_555 SG ? D CYS 7 ? G CYS 78 ? 1_555 106.7 ? 14 SG ? D CYS 4 ? G CYS 75 ? 1_555 ZN ? G ZN . ? G ZN 201 ? 1_555 SG ? D CYS 21 ? G CYS 92 ? 1_555 108.9 ? 15 SG ? D CYS 7 ? G CYS 78 ? 1_555 ZN ? G ZN . ? G ZN 201 ? 1_555 SG ? D CYS 21 ? G CYS 92 ? 1_555 105.2 ? 16 SG ? D CYS 4 ? G CYS 75 ? 1_555 ZN ? G ZN . ? G ZN 201 ? 1_555 SG ? D CYS 24 ? G CYS 95 ? 1_555 111.8 ? 17 SG ? D CYS 7 ? G CYS 78 ? 1_555 ZN ? G ZN . ? G ZN 201 ? 1_555 SG ? D CYS 24 ? G CYS 95 ? 1_555 115.6 ? 18 SG ? D CYS 21 ? G CYS 92 ? 1_555 ZN ? G ZN . ? G ZN 201 ? 1_555 SG ? D CYS 24 ? G CYS 95 ? 1_555 108.3 ? 19 SG ? D CYS 40 ? G CYS 111 ? 1_555 ZN ? H ZN . ? G ZN 202 ? 1_555 SG ? D CYS 46 ? G CYS 117 ? 1_555 113.0 ? 20 SG ? D CYS 40 ? G CYS 111 ? 1_555 ZN ? H ZN . ? G ZN 202 ? 1_555 SG ? D CYS 56 ? G CYS 127 ? 1_555 109.6 ? 21 SG ? D CYS 46 ? G CYS 117 ? 1_555 ZN ? H ZN . ? G ZN 202 ? 1_555 SG ? D CYS 56 ? G CYS 127 ? 1_555 109.7 ? 22 SG ? D CYS 40 ? G CYS 111 ? 1_555 ZN ? H ZN . ? G ZN 202 ? 1_555 SG ? D CYS 59 ? G CYS 130 ? 1_555 112.9 ? 23 SG ? D CYS 46 ? G CYS 117 ? 1_555 ZN ? H ZN . ? G ZN 202 ? 1_555 SG ? D CYS 59 ? G CYS 130 ? 1_555 106.2 ? 24 SG ? D CYS 56 ? G CYS 127 ? 1_555 ZN ? H ZN . ? G ZN 202 ? 1_555 SG ? D CYS 59 ? G CYS 130 ? 1_555 105.1 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU B 14 ? HIS B 15 ? LEU B 85 HIS B 86 AA1 2 ILE B 18 ? ILE B 19 ? ILE B 89 ILE B 90 AA2 1 GLY D 13 ? HIS D 15 ? GLY G 84 HIS G 86 AA2 2 ILE D 18 ? SER D 20 ? ILE G 89 SER G 91 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N HIS B 15 ? N HIS B 86 O ILE B 18 ? O ILE B 89 AA2 1 2 N HIS D 15 ? N HIS G 86 O ILE D 18 ? O ILE G 89 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B ZN 201 ? 4 'binding site for residue ZN B 201' AC2 Software B ZN 202 ? 4 'binding site for residue ZN B 202' AC3 Software G ZN 201 ? 4 'binding site for residue ZN G 201' AC4 Software G ZN 202 ? 4 'binding site for residue ZN G 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS B 4 ? CYS B 75 . ? 1_555 ? 2 AC1 4 CYS B 7 ? CYS B 78 . ? 1_555 ? 3 AC1 4 CYS B 21 ? CYS B 92 . ? 1_555 ? 4 AC1 4 CYS B 24 ? CYS B 95 . ? 1_555 ? 5 AC2 4 CYS B 40 ? CYS B 111 . ? 1_555 ? 6 AC2 4 CYS B 46 ? CYS B 117 . ? 1_555 ? 7 AC2 4 CYS B 56 ? CYS B 127 . ? 1_555 ? 8 AC2 4 CYS B 59 ? CYS B 130 . ? 1_555 ? 9 AC3 4 CYS D 4 ? CYS G 75 . ? 1_555 ? 10 AC3 4 CYS D 7 ? CYS G 78 . ? 1_555 ? 11 AC3 4 CYS D 21 ? CYS G 92 . ? 1_555 ? 12 AC3 4 CYS D 24 ? CYS G 95 . ? 1_555 ? 13 AC4 4 CYS D 40 ? CYS G 111 . ? 1_555 ? 14 AC4 4 CYS D 46 ? CYS G 117 . ? 1_555 ? 15 AC4 4 CYS D 56 ? CYS G 127 . ? 1_555 ? 16 AC4 4 CYS D 59 ? CYS G 130 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 210 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 211 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.13 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE B 77 ? ? -93.66 -60.58 2 1 ARG B 113 ? ? -135.25 -116.49 3 1 ARG G 113 ? ? -140.71 -128.12 4 1 ASN G 116 ? ? -145.85 23.14 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id B _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 314 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 9.95 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B ARG 146 ? B ARG 75 2 1 Y 1 B GLU 147 ? B GLU 76 3 1 Y 1 B ASP 148 ? B ASP 77 4 1 Y 1 B GLY 149 ? B GLY 78 5 1 Y 1 B MET 150 ? B MET 79 6 1 Y 1 B PRO 151 ? B PRO 80 7 1 Y 1 B GLY 152 ? B GLY 81 8 1 Y 1 B GLY 153 ? B GLY 82 9 1 Y 1 B ARG 154 ? B ARG 83 10 1 Y 1 B ASN 155 ? B ASN 84 11 1 Y 1 G GLN 72 ? D GLN 1 12 1 Y 1 G ARG 73 ? D ARG 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 PHE N N N N 393 PHE CA C N S 394 PHE C C N N 395 PHE O O N N 396 PHE CB C N N 397 PHE CG C Y N 398 PHE CD1 C Y N 399 PHE CD2 C Y N 400 PHE CE1 C Y N 401 PHE CE2 C Y N 402 PHE CZ C Y N 403 PHE OXT O N N 404 PHE H H N N 405 PHE H2 H N N 406 PHE HA H N N 407 PHE HB2 H N N 408 PHE HB3 H N N 409 PHE HD1 H N N 410 PHE HD2 H N N 411 PHE HE1 H N N 412 PHE HE2 H N N 413 PHE HZ H N N 414 PHE HXT H N N 415 PRO N N N N 416 PRO CA C N S 417 PRO C C N N 418 PRO O O N N 419 PRO CB C N N 420 PRO CG C N N 421 PRO CD C N N 422 PRO OXT O N N 423 PRO H H N N 424 PRO HA H N N 425 PRO HB2 H N N 426 PRO HB3 H N N 427 PRO HG2 H N N 428 PRO HG3 H N N 429 PRO HD2 H N N 430 PRO HD3 H N N 431 PRO HXT H N N 432 SER N N N N 433 SER CA C N S 434 SER C C N N 435 SER O O N N 436 SER CB C N N 437 SER OG O N N 438 SER OXT O N N 439 SER H H N N 440 SER H2 H N N 441 SER HA H N N 442 SER HB2 H N N 443 SER HB3 H N N 444 SER HG H N N 445 SER HXT H N N 446 THR N N N N 447 THR CA C N S 448 THR C C N N 449 THR O O N N 450 THR CB C N R 451 THR OG1 O N N 452 THR CG2 C N N 453 THR OXT O N N 454 THR H H N N 455 THR H2 H N N 456 THR HA H N N 457 THR HB H N N 458 THR HG1 H N N 459 THR HG21 H N N 460 THR HG22 H N N 461 THR HG23 H N N 462 THR HXT H N N 463 TYR N N N N 464 TYR CA C N S 465 TYR C C N N 466 TYR O O N N 467 TYR CB C N N 468 TYR CG C Y N 469 TYR CD1 C Y N 470 TYR CD2 C Y N 471 TYR CE1 C Y N 472 TYR CE2 C Y N 473 TYR CZ C Y N 474 TYR OH O N N 475 TYR OXT O N N 476 TYR H H N N 477 TYR H2 H N N 478 TYR HA H N N 479 TYR HB2 H N N 480 TYR HB3 H N N 481 TYR HD1 H N N 482 TYR HD2 H N N 483 TYR HE1 H N N 484 TYR HE2 H N N 485 TYR HH H N N 486 TYR HXT H N N 487 VAL N N N N 488 VAL CA C N S 489 VAL C C N N 490 VAL O O N N 491 VAL CB C N N 492 VAL CG1 C N N 493 VAL CG2 C N N 494 VAL OXT O N N 495 VAL H H N N 496 VAL H2 H N N 497 VAL HA H N N 498 VAL HB H N N 499 VAL HG11 H N N 500 VAL HG12 H N N 501 VAL HG13 H N N 502 VAL HG21 H N N 503 VAL HG22 H N N 504 VAL HG23 H N N 505 VAL HXT H N N 506 ZN ZN ZN N N 507 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PRO N CA sing N N 409 PRO N CD sing N N 410 PRO N H sing N N 411 PRO CA C sing N N 412 PRO CA CB sing N N 413 PRO CA HA sing N N 414 PRO C O doub N N 415 PRO C OXT sing N N 416 PRO CB CG sing N N 417 PRO CB HB2 sing N N 418 PRO CB HB3 sing N N 419 PRO CG CD sing N N 420 PRO CG HG2 sing N N 421 PRO CG HG3 sing N N 422 PRO CD HD2 sing N N 423 PRO CD HD3 sing N N 424 PRO OXT HXT sing N N 425 SER N CA sing N N 426 SER N H sing N N 427 SER N H2 sing N N 428 SER CA C sing N N 429 SER CA CB sing N N 430 SER CA HA sing N N 431 SER C O doub N N 432 SER C OXT sing N N 433 SER CB OG sing N N 434 SER CB HB2 sing N N 435 SER CB HB3 sing N N 436 SER OG HG sing N N 437 SER OXT HXT sing N N 438 THR N CA sing N N 439 THR N H sing N N 440 THR N H2 sing N N 441 THR CA C sing N N 442 THR CA CB sing N N 443 THR CA HA sing N N 444 THR C O doub N N 445 THR C OXT sing N N 446 THR CB OG1 sing N N 447 THR CB CG2 sing N N 448 THR CB HB sing N N 449 THR OG1 HG1 sing N N 450 THR CG2 HG21 sing N N 451 THR CG2 HG22 sing N N 452 THR CG2 HG23 sing N N 453 THR OXT HXT sing N N 454 TYR N CA sing N N 455 TYR N H sing N N 456 TYR N H2 sing N N 457 TYR CA C sing N N 458 TYR CA CB sing N N 459 TYR CA HA sing N N 460 TYR C O doub N N 461 TYR C OXT sing N N 462 TYR CB CG sing N N 463 TYR CB HB2 sing N N 464 TYR CB HB3 sing N N 465 TYR CG CD1 doub Y N 466 TYR CG CD2 sing Y N 467 TYR CD1 CE1 sing Y N 468 TYR CD1 HD1 sing N N 469 TYR CD2 CE2 doub Y N 470 TYR CD2 HD2 sing N N 471 TYR CE1 CZ doub Y N 472 TYR CE1 HE1 sing N N 473 TYR CE2 CZ sing Y N 474 TYR CE2 HE2 sing N N 475 TYR CZ OH sing N N 476 TYR OH HH sing N N 477 TYR OXT HXT sing N N 478 VAL N CA sing N N 479 VAL N H sing N N 480 VAL N H2 sing N N 481 VAL CA C sing N N 482 VAL CA CB sing N N 483 VAL CA HA sing N N 484 VAL C O doub N N 485 VAL C OXT sing N N 486 VAL CB CG1 sing N N 487 VAL CB CG2 sing N N 488 VAL CB HB sing N N 489 VAL CG1 HG11 sing N N 490 VAL CG1 HG12 sing N N 491 VAL CG1 HG13 sing N N 492 VAL CG2 HG21 sing N N 493 VAL CG2 HG22 sing N N 494 VAL CG2 HG23 sing N N 495 VAL OXT HXT sing N N 496 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5KRB 'double helix' 5KRB 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 C DT 16 1_555 0.249 -0.146 0.329 13.048 -17.491 -1.990 1 A_DA105:DT104_E A 105 ? E 104 ? 20 1 1 A DG 2 1_555 C DC 15 1_555 -0.004 -0.059 0.625 17.963 -15.386 4.031 2 A_DG106:DC103_E A 106 ? E 103 ? 19 1 1 A DA 3 1_555 C DT 14 1_555 0.237 -0.116 0.169 -2.994 -21.856 -2.908 3 A_DA107:DT102_E A 107 ? E 102 ? 20 1 1 A DG 4 1_555 C DC 13 1_555 -0.251 -0.210 0.131 2.969 -12.583 6.334 4 A_DG108:DC101_E A 108 ? E 101 ? 19 1 1 A DG 5 1_555 C DC 12 1_555 -0.376 -0.126 -0.076 -23.237 -10.023 4.517 5 A_DG109:DC100_E A 109 ? E 100 ? 19 1 1 A DT 6 1_555 C DA 11 1_555 -0.113 0.066 0.964 -24.977 -11.654 -0.538 6 A_DT110:DA99_E A 110 ? E 99 ? 20 1 1 A DC 7 1_555 C DG 10 1_555 0.380 -0.135 -0.074 -2.950 4.204 4.827 7 A_DC111:DG98_E A 111 ? E 98 ? 19 1 1 A DA 8 1_555 C DT 9 1_555 0.020 0.004 0.432 16.223 -12.931 5.129 8 A_DA112:DT97_E A 112 ? E 97 ? 20 1 1 A DA 9 1_555 C DT 8 1_555 0.270 -0.173 0.230 4.500 -26.160 0.726 9 A_DA113:DT96_E A 113 ? E 96 ? 20 1 1 A DG 10 1_555 C DC 7 1_555 -0.078 -0.131 -0.015 2.157 -6.913 2.946 10 A_DG114:DC95_E A 114 ? E 95 ? 19 1 1 A DG 11 1_555 C DC 6 1_555 -0.416 -0.102 -0.245 -19.168 -12.556 3.703 11 A_DG115:DC94_E A 115 ? E 94 ? 19 1 1 A DC 12 1_555 C DG 5 1_555 0.188 -0.108 0.611 -14.152 -11.734 -0.405 12 A_DC116:DG93_E A 116 ? E 93 ? 19 1 1 A DT 13 1_555 C DA 4 1_555 0.179 -0.091 0.047 -1.786 6.830 5.239 13 A_DT117:DA92_E A 117 ? E 92 ? 20 1 1 A DA 14 1_555 C DT 3 1_555 0.216 -0.080 0.644 8.295 -28.201 -0.040 14 A_DA118:DT91_E A 118 ? E 91 ? 20 1 1 A DG 15 1_555 C DC 2 1_555 0.004 0.080 0.341 1.326 -18.493 1.589 15 A_DG119:DC90_E A 119 ? E 90 ? 19 1 1 A DA 16 1_555 C DT 1 1_555 2.589 0.151 0.627 6.415 -18.510 -28.325 16 A_DA120:DT89_E A 120 ? E 89 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 C DT 16 1_555 A DG 2 1_555 C DC 15 1_555 0.914 -0.011 3.216 -0.547 2.784 33.692 -0.459 -1.658 3.190 4.792 0.942 33.808 1 AA_DA105DG106:DC103DT104_EE A 105 ? E 104 ? A 106 ? E 103 ? 1 A DG 2 1_555 C DC 15 1_555 A DA 3 1_555 C DT 14 1_555 -0.411 -0.356 3.661 0.604 -4.137 40.163 0.008 0.672 3.672 -6.005 -0.877 40.371 2 AA_DG106DA107:DT102DC103_EE A 106 ? E 103 ? A 107 ? E 102 ? 1 A DA 3 1_555 C DT 14 1_555 A DG 4 1_555 C DC 13 1_555 0.577 -0.554 3.166 -0.049 8.514 33.820 -2.152 -0.971 2.943 14.354 0.083 34.845 3 AA_DA107DG108:DC101DT102_EE A 107 ? E 102 ? A 108 ? E 101 ? 1 A DG 4 1_555 C DC 13 1_555 A DG 5 1_555 C DC 12 1_555 -0.421 -0.970 3.902 1.355 -0.886 36.341 -1.407 0.899 3.906 -1.419 -2.171 36.376 4 AA_DG108DG109:DC100DC101_EE A 108 ? E 101 ? A 109 ? E 100 ? 1 A DG 5 1_555 C DC 12 1_555 A DT 6 1_555 C DA 11 1_555 -0.727 -0.912 3.401 -6.437 -0.357 34.812 -1.445 0.190 3.484 -0.590 10.646 35.386 5 AA_DG109DT110:DA99DC100_EE A 109 ? E 100 ? A 110 ? E 99 ? 1 A DT 6 1_555 C DA 11 1_555 A DC 7 1_555 C DG 10 1_555 1.418 1.447 3.025 7.540 3.260 35.421 1.871 -1.232 3.362 5.270 -12.191 36.331 6 AA_DT110DC111:DG98DA99_EE A 110 ? E 99 ? A 111 ? E 98 ? 1 A DC 7 1_555 C DG 10 1_555 A DA 8 1_555 C DT 9 1_555 -0.544 1.371 3.019 -6.354 1.380 33.721 2.119 -0.020 3.118 2.351 10.829 34.324 7 AA_DC111DA112:DT97DG98_EE A 111 ? E 98 ? A 112 ? E 97 ? 1 A DA 8 1_555 C DT 9 1_555 A DA 9 1_555 C DT 8 1_555 -0.729 -0.281 3.448 -1.268 -4.752 39.500 0.173 0.915 3.478 -6.997 1.867 39.792 8 AA_DA112DA113:DT96DT97_EE A 112 ? E 97 ? A 113 ? E 96 ? 1 A DA 9 1_555 C DT 8 1_555 A DG 10 1_555 C DC 7 1_555 0.345 -0.854 3.334 1.926 9.005 34.166 -2.723 -0.286 3.033 14.992 -3.207 35.349 9 AA_DA113DG114:DC95DT96_EE A 113 ? E 96 ? A 114 ? E 95 ? 1 A DG 10 1_555 C DC 7 1_555 A DG 11 1_555 C DC 6 1_555 -0.379 -0.960 3.889 0.672 1.023 36.743 -1.687 0.709 3.854 1.623 -1.065 36.763 10 AA_DG114DG115:DC94DC95_EE A 114 ? E 95 ? A 115 ? E 94 ? 1 A DG 11 1_555 C DC 6 1_555 A DC 12 1_555 C DG 5 1_555 -0.675 -0.494 3.186 -6.833 1.345 33.996 -1.033 0.092 3.235 2.271 11.536 34.681 11 AA_DG115DC116:DG93DC94_EE A 115 ? E 94 ? A 116 ? E 93 ? 1 A DC 12 1_555 C DG 5 1_555 A DT 13 1_555 C DA 4 1_555 0.982 0.531 3.168 5.146 -0.677 32.482 1.052 -0.864 3.270 -1.202 -9.126 32.883 12 AA_DC116DT117:DA92DG93_EE A 116 ? E 93 ? A 117 ? E 92 ? 1 A DT 13 1_555 C DA 4 1_555 A DA 14 1_555 C DT 3 1_555 -1.206 1.332 3.231 -5.950 -9.081 39.321 2.889 1.094 3.008 -13.192 8.644 40.735 13 AA_DT117DA118:DT91DA92_EE A 117 ? E 92 ? A 118 ? E 91 ? 1 A DA 14 1_555 C DT 3 1_555 A DG 15 1_555 C DC 2 1_555 0.367 -0.585 3.457 3.030 5.091 33.533 -1.850 -0.121 3.355 8.739 -5.200 34.038 14 AA_DA118DG119:DC90DT91_EE A 118 ? E 91 ? A 119 ? E 90 ? 1 A DG 15 1_555 C DC 2 1_555 A DA 16 1_555 C DT 1 1_555 -1.357 -0.740 3.239 -6.519 1.059 51.038 -0.926 1.112 3.362 1.223 7.529 51.435 15 AA_DG119DA120:DT89DC90_EE A 119 ? E 90 ? A 120 ? E 89 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)' 'United States' 1R01DK095750-01 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' 1F31GM113397-01A1 2 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'Previous low resolution structure' # _atom_sites.entry_id 5KRB _atom_sites.fract_transf_matrix[1][1] 0.018640 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014395 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011829 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N O P S ZN # loop_