HEADER RNA 07-JUL-16 5KRG TITLE RNA 15MER DUPLEX BINDING WITH PZG MONOMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG) COMPND 3 P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3'); COMPND 4 CHAIN: A, B, C, D; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS RNA EXPDTA X-RAY DIFFRACTION AUTHOR W.ZHANG,C.P.TAM,J.W.SZOSTAK REVDAT 5 04-OCT-23 5KRG 1 REMARK REVDAT 4 20-NOV-19 5KRG 1 REMARK REVDAT 3 20-SEP-17 5KRG 1 REMARK REVDAT 2 18-JAN-17 5KRG 1 JRNL REVDAT 1 07-DEC-16 5KRG 0 JRNL AUTH W.ZHANG,C.P.TAM,J.WANG,J.W.SZOSTAK JRNL TITL UNUSUAL BASE-PAIRING INTERACTIONS IN MONOMER-TEMPLATE JRNL TITL 2 COMPLEXES. JRNL REF ACS CENT SCI V. 2 916 2016 JRNL REFN ESSN 2374-7943 JRNL PMID 28058281 JRNL DOI 10.1021/ACSCENTSCI.6B00278 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 21914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1242 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1129 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 1288 REMARK 3 HETEROGEN ATOMS : 116 REMARK 3 SOLVENT ATOMS : 92 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.086 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1560 ; 0.024 ; 0.016 REMARK 3 BOND LENGTHS OTHERS (A): 700 ; 0.074 ; 0.024 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2416 ; 2.656 ; 1.858 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1680 ; 3.922 ; 3.229 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 272 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 804 ; 0.021 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 304 ; 0.002 ; 0.021 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1560 ; 2.509 ; 2.859 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1561 ; 2.508 ; 2.863 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2417 ; 3.573 ; 4.290 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2284 ; 3.933 ;28.171 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2271 ; 3.918 ;28.178 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5KRG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222613. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 99 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21914 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 4NFO REMARK 200 REMARK 200 REMARK: DIAMOND SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.05 M HEPES SODIUM PH 7.0, 4.0 M LITHIUM CHLORIDE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 207 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 212 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 218 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 207 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 216 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 219 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LCC A 1 O3' LCC A 2 P 0.077 REMARK 500 LCC A 2 O3' LCC A 3 P 0.086 REMARK 500 LCC B 1 O3' LCC B 2 P 0.074 REMARK 500 LCC B 2 O3' LCC B 3 P 0.074 REMARK 500 LCC B 3 O3' LCG B 4 P 0.094 REMARK 500 LCG B 4 O3' A B 5 P -0.083 REMARK 500 LCC C 2 O3' LCC C 3 P 0.102 REMARK 500 U C 8 O3' A C 9 P -0.074 REMARK 500 LCC D 1 O3' LCC D 2 P 0.090 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LCC A 2 O3' - P - O5' ANGL. DEV. = -11.7 DEGREES REMARK 500 G A 11 O5' - P - OP2 ANGL. DEV. = -5.5 DEGREES REMARK 500 G C 15 O5' - P - OP2 ANGL. DEV. = -11.9 DEGREES REMARK 500 A D 5 O3' - P - OP2 ANGL. DEV. = 6.9 DEGREES REMARK 500 A D 9 O5' - P - OP2 ANGL. DEV. = -7.3 DEGREES REMARK 500 U D 12 O5' - P - OP2 ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PZG A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PZG A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PZG C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PZG D 101 DBREF 5KRG A 1 15 PDB 5KRG 5KRG 1 15 DBREF 5KRG B 1 15 PDB 5KRG 5KRG 1 15 DBREF 5KRG C 1 15 PDB 5KRG 5KRG 1 15 DBREF 5KRG D 1 15 PDB 5KRG 5KRG 1 15 SEQRES 1 A 15 LCC LCC LCC LCG A C U U A A G U C SEQRES 2 A 15 G G SEQRES 1 B 15 LCC LCC LCC LCG A C U U A A G U C SEQRES 2 B 15 G G SEQRES 1 C 15 LCC LCC LCC LCG A C U U A A G U C SEQRES 2 C 15 G G SEQRES 1 D 15 LCC LCC LCC LCG A C U U A A G U C SEQRES 2 D 15 G G HET LCC A 1 19 HET LCC A 2 22 HET LCC A 3 22 HET LCG A 4 24 HET LCC B 1 19 HET LCC B 2 22 HET LCC B 3 22 HET LCG B 4 24 HET LCC C 1 19 HET LCC C 2 22 HET LCC C 3 22 HET LCG C 4 24 HET LCC D 1 19 HET LCC D 2 22 HET LCC D 3 22 HET LCG D 4 24 HET PZG A 101 29 HET PZG A 102 29 HET PZG C 101 29 HET PZG D 101 29 HETNAM LCC [(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5- HETNAM 2 LCC DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCC PHOSPHATE HETNAM LCG [(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5- HETNAM 2 LCG DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCG PHOSPHATE HETNAM PZG [(2~{R},3~{S},4~{R},5~{R})-5-(2-AZANYL-6-OXIDANYLIDENE- HETNAM 2 PZG 1~{H}-PURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2- HETNAM 3 PZG YL]METHOXY-(3-METHYL-1~{H}-PYRAZOL-4-YL)PHOSPHINIC HETNAM 4 PZG ACID FORMUL 1 LCC 12(C11 H16 N3 O8 P) FORMUL 1 LCG 4(C11 H14 N5 O8 P) FORMUL 5 PZG 4(C14 H18 N7 O7 P) FORMUL 9 HOH *92(H2 O) LINK O3' LCC A 1 P LCC A 2 1555 1555 1.68 LINK O3' LCC A 2 P LCC A 3 1555 1555 1.69 LINK O3' LCC A 3 P LCG A 4 1555 1555 1.66 LINK O3' LCG A 4 P A A 5 1555 1555 1.58 LINK O3' LCC B 1 P LCC B 2 1555 1555 1.68 LINK O3' LCC B 2 P LCC B 3 1555 1555 1.68 LINK O3' LCC B 3 P LCG B 4 1555 1555 1.70 LINK O3' LCG B 4 P A B 5 1555 1555 1.52 LINK O3' LCC C 1 P LCC C 2 1555 1555 1.64 LINK O3' LCC C 2 P LCC C 3 1555 1555 1.71 LINK O3' LCC C 3 P LCG C 4 1555 1555 1.67 LINK O3' LCG C 4 P A C 5 1555 1555 1.59 LINK O3' LCC D 1 P LCC D 2 1555 1555 1.70 LINK O3' LCC D 2 P LCC D 3 1555 1555 1.66 LINK O3' LCC D 3 P LCG D 4 1555 1555 1.67 LINK O3' LCG D 4 P A D 5 1555 1555 1.55 SITE 1 AC1 4 LCC A 1 LCC C 1 LCC C 2 G D 15 SITE 1 AC2 5 G A 15 HOH A 203 LCC B 1 LCC B 2 SITE 2 AC2 5 LCC D 1 SITE 1 AC3 5 LCC A 1 LCC A 2 G B 15 HOH B 102 SITE 2 AC3 5 LCC C 1 SITE 1 AC4 7 U A 12 C A 13 LCC B 1 G C 15 SITE 2 AC4 7 LCC D 1 LCC D 2 HOH D 203 CRYST1 44.046 44.046 84.516 90.00 90.00 120.00 P 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022704 0.013108 0.000000 0.00000 SCALE2 0.000000 0.026216 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011832 0.00000 HETATM 1 O5' LCC A 1 26.894 31.071 86.372 1.00 42.88 O HETATM 2 C5' LCC A 1 25.637 31.777 86.482 1.00 44.20 C HETATM 3 C4' LCC A 1 24.634 30.704 86.176 1.00 41.97 C HETATM 4 O4' LCC A 1 24.910 29.893 85.002 1.00 45.75 O HETATM 5 C1' LCC A 1 24.160 28.646 85.253 1.00 41.77 C HETATM 6 N1 LCC A 1 24.977 27.436 85.182 1.00 37.51 N HETATM 7 C6 LCC A 1 26.378 27.480 85.217 1.00 37.61 C HETATM 8 C5 LCC A 1 27.066 26.304 85.094 1.00 36.29 C HETATM 9 C5M LCC A 1 28.471 26.326 85.115 1.00 38.70 C HETATM 10 C4 LCC A 1 26.278 25.128 84.918 1.00 34.26 C HETATM 11 N4 LCC A 1 26.922 24.000 84.774 1.00 34.18 N HETATM 12 N3 LCC A 1 24.926 25.137 84.884 1.00 33.16 N HETATM 13 C2 LCC A 1 24.282 26.275 85.003 1.00 40.30 C HETATM 14 O2 LCC A 1 23.043 26.276 84.985 1.00 34.96 O HETATM 15 C3' LCC A 1 24.611 29.648 87.222 1.00 41.84 C HETATM 16 C2' LCC A 1 23.550 28.878 86.592 1.00 40.49 C HETATM 17 O2' LCC A 1 22.508 29.873 86.424 1.00 42.51 O HETATM 18 O3' LCC A 1 24.022 30.166 88.402 1.00 41.86 O HETATM 19 C6' LCC A 1 23.171 31.200 86.106 1.00 46.41 C HETATM 20 O5' LCC A 2 23.692 28.195 89.828 1.00 31.46 O HETATM 21 C5' LCC A 2 22.279 28.266 90.042 1.00 28.60 C HETATM 22 C4' LCC A 2 21.904 26.822 89.676 1.00 27.36 C HETATM 23 O4' LCC A 2 22.421 26.297 88.406 1.00 30.93 O HETATM 24 C1' LCC A 2 22.430 24.878 88.474 1.00 26.24 C HETATM 25 N1 LCC A 2 23.820 24.464 88.352 1.00 28.95 N HETATM 26 C6 LCC A 2 24.919 25.338 88.535 1.00 27.38 C HETATM 27 C5 LCC A 2 26.170 24.804 88.366 1.00 28.24 C HETATM 28 C5M LCC A 2 27.323 25.605 88.547 1.00 29.42 C HETATM 29 C4 LCC A 2 26.288 23.449 88.020 1.00 27.32 C HETATM 30 N4 LCC A 2 27.519 22.999 87.920 1.00 28.89 N HETATM 31 N3 LCC A 2 25.229 22.615 87.900 1.00 27.58 N HETATM 32 C2 LCC A 2 24.031 23.143 88.062 1.00 27.20 C HETATM 33 O2 LCC A 2 23.062 22.399 87.892 1.00 26.86 O HETATM 34 C3' LCC A 2 22.467 25.854 90.582 1.00 28.27 C HETATM 35 C2' LCC A 2 21.878 24.654 89.861 1.00 27.58 C HETATM 36 O2' LCC A 2 20.481 24.976 89.767 1.00 29.25 O HETATM 37 O3' LCC A 2 21.807 26.047 91.777 1.00 34.08 O HETATM 38 C6' LCC A 2 20.405 26.558 89.720 1.00 29.71 C HETATM 39 P LCC A 2 24.615 29.646 89.890 1.00 35.23 P HETATM 40 O1P LCC A 2 23.925 30.526 90.877 1.00 35.93 O HETATM 41 O2P LCC A 2 26.167 29.188 90.056 1.00 29.69 O1- HETATM 42 O5' LCC A 3 22.138 23.658 93.062 1.00 25.71 O HETATM 43 C5' LCC A 3 20.830 23.170 93.052 1.00 23.57 C HETATM 44 C4' LCC A 3 21.028 21.711 92.624 1.00 22.18 C HETATM 45 O4' LCC A 3 21.709 21.491 91.327 1.00 24.72 O HETATM 46 C1' LCC A 3 22.291 20.174 91.452 1.00 22.90 C HETATM 47 N1 LCC A 3 23.743 20.336 91.296 1.00 23.09 N HETATM 48 C6 LCC A 3 24.395 21.542 91.449 1.00 22.58 C HETATM 49 C5 LCC A 3 25.728 21.687 91.228 1.00 23.89 C HETATM 50 C5M LCC A 3 26.321 22.961 91.450 1.00 23.16 C HETATM 51 C4 LCC A 3 26.431 20.485 90.892 1.00 23.23 C HETATM 52 N4 LCC A 3 27.753 20.563 90.638 1.00 23.05 N HETATM 53 N3 LCC A 3 25.751 19.312 90.758 1.00 21.82 N HETATM 54 C2 LCC A 3 24.444 19.226 91.003 1.00 22.98 C HETATM 55 O2 LCC A 3 23.890 18.112 90.908 1.00 21.43 O HETATM 56 C3' LCC A 3 21.820 20.912 93.526 1.00 23.11 C HETATM 57 C2' LCC A 3 21.784 19.710 92.761 1.00 21.51 C HETATM 58 O2' LCC A 3 20.379 19.513 92.519 1.00 24.51 O HETATM 59 O3' LCC A 3 21.101 20.759 94.803 1.00 25.27 O HETATM 60 C6' LCC A 3 19.787 20.932 92.512 1.00 23.81 C HETATM 61 P LCC A 3 22.387 25.259 93.159 1.00 29.22 P HETATM 62 O1P LCC A 3 21.534 25.718 94.335 1.00 27.73 O HETATM 63 O2P LCC A 3 23.926 25.335 93.247 1.00 27.94 O1- HETATM 64 P LCG A 4 21.955 20.633 96.216 1.00 27.29 P HETATM 65 OP1 LCG A 4 20.852 20.664 97.204 1.00 26.65 O HETATM 66 O5' LCG A 4 22.588 19.139 96.114 1.00 24.16 O HETATM 67 C5' LCG A 4 21.749 18.035 96.005 1.00 21.72 C HETATM 68 C3' LCG A 4 23.872 16.708 96.613 1.00 22.60 C HETATM 69 C6' LCG A 4 21.998 15.487 95.797 1.00 24.10 C HETATM 70 N9 LCG A 4 25.523 16.945 94.175 1.00 22.10 N HETATM 71 C8 LCG A 4 25.570 18.323 94.198 1.00 21.35 C HETATM 72 C4 LCG A 4 26.725 16.469 93.799 1.00 21.27 C HETATM 73 N7 LCG A 4 26.798 18.678 93.865 1.00 22.48 N HETATM 74 C5 LCG A 4 27.514 17.562 93.584 1.00 21.70 C HETATM 75 C6 LCG A 4 28.810 17.428 93.178 1.00 23.91 C HETATM 76 C2' LCG A 4 24.370 15.492 95.857 1.00 22.37 C HETATM 77 O6 LCG A 4 29.599 18.356 92.980 1.00 22.65 O HETATM 78 C4' LCG A 4 22.682 16.855 95.782 1.00 23.42 C HETATM 79 C1' LCG A 4 24.404 16.125 94.483 1.00 23.96 C HETATM 80 C2 LCG A 4 28.474 15.070 93.239 1.00 22.66 C HETATM 81 N1 LCG A 4 29.247 16.175 93.006 1.00 23.29 N HETATM 82 O4' LCG A 4 23.244 17.051 94.452 1.00 24.84 O HETATM 83 OP2 LCG A 4 23.110 21.590 96.300 1.00 25.80 O1- HETATM 84 N2 LCG A 4 29.033 13.860 93.047 1.00 24.62 N HETATM 85 N3 LCG A 4 27.165 15.167 93.671 1.00 22.89 N HETATM 86 O2' LCG A 4 23.188 14.573 95.914 1.00 24.88 O HETATM 87 O3' LCG A 4 23.488 16.458 97.985 1.00 22.45 O