HEADER OXIDOREDUCTASE 07-JUL-16 5KRQ TITLE RENALASE IN COMPLEX WITH NADPH COMPND MOL_ID: 1; COMPND 2 MOLECULE: RENALASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SAVASTANOI PV. PHASEOLICOLA; SOURCE 3 ORGANISM_TAXID: 319; SOURCE 4 GENE: ALO55_03823; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RENALASE, SUBSTRATE BINDING, NADPH, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.R.SILVAGGI,G.R.MORAN,J.V.ROMAN REVDAT 4 04-OCT-23 5KRQ 1 REMARK REVDAT 3 27-NOV-19 5KRQ 1 REMARK REVDAT 2 20-SEP-17 5KRQ 1 JRNL REMARK REVDAT 1 02-NOV-16 5KRQ 0 JRNL AUTH B.A.BEAUPRE,J.V.ROMAN,M.R.HOAG,K.M.MENEELY,N.R.SILVAGGI, JRNL AUTH 2 A.L.LAMB,G.R.MORAN JRNL TITL LIGAND BINDING PHENOMENA THAT PERTAIN TO THE METABOLIC JRNL TITL 2 FUNCTION OF RENALASE. JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 612 46 2016 JRNL REFN ESSN 1096-0384 JRNL PMID 27769837 JRNL DOI 10.1016/J.ABB.2016.10.011 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2328: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 37198 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1860 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0338 - 4.4931 1.00 3668 193 0.1492 0.1702 REMARK 3 2 4.4931 - 3.5667 1.00 3608 190 0.1251 0.1668 REMARK 3 3 3.5667 - 3.1160 1.00 3626 190 0.1520 0.1832 REMARK 3 4 3.1160 - 2.8311 1.00 3578 189 0.1726 0.2192 REMARK 3 5 2.8311 - 2.6282 1.00 3581 189 0.1763 0.2397 REMARK 3 6 2.6282 - 2.4733 1.00 3587 188 0.1689 0.2447 REMARK 3 7 2.4733 - 2.3494 1.00 3564 188 0.1676 0.2348 REMARK 3 8 2.3494 - 2.2472 1.00 3590 188 0.1678 0.2397 REMARK 3 9 2.2472 - 2.1607 0.98 3499 185 0.1799 0.2286 REMARK 3 10 2.1607 - 2.0861 0.85 3037 160 0.1960 0.2871 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5243 REMARK 3 ANGLE : 1.225 7169 REMARK 3 CHIRALITY : 0.057 758 REMARK 3 PLANARITY : 0.007 905 REMARK 3 DIHEDRAL : 13.731 3003 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7043 8.0455 -4.9809 REMARK 3 T TENSOR REMARK 3 T11: 0.1303 T22: 0.1313 REMARK 3 T33: 0.1849 T12: -0.0136 REMARK 3 T13: -0.0462 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 2.5753 L22: 1.1239 REMARK 3 L33: 5.0869 L12: 0.0318 REMARK 3 L13: -1.3051 L23: -0.1559 REMARK 3 S TENSOR REMARK 3 S11: -0.0099 S12: -0.0485 S13: 0.1416 REMARK 3 S21: 0.0164 S22: 0.0344 S23: -0.0404 REMARK 3 S31: -0.1056 S32: 0.2300 S33: -0.0364 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8499 3.4026 12.0355 REMARK 3 T TENSOR REMARK 3 T11: 0.2192 T22: 0.2939 REMARK 3 T33: 0.2264 T12: 0.0370 REMARK 3 T13: -0.0412 T23: 0.0469 REMARK 3 L TENSOR REMARK 3 L11: 2.2974 L22: 1.3851 REMARK 3 L33: 3.9527 L12: -0.5140 REMARK 3 L13: -1.6788 L23: -0.2250 REMARK 3 S TENSOR REMARK 3 S11: -0.1650 S12: -0.3876 S13: -0.3195 REMARK 3 S21: 0.0691 S22: 0.1073 S23: 0.0987 REMARK 3 S31: 0.2552 S32: 0.5480 S33: 0.0664 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8947 11.0523 -20.5556 REMARK 3 T TENSOR REMARK 3 T11: 0.1695 T22: 0.2040 REMARK 3 T33: 0.1499 T12: -0.0466 REMARK 3 T13: -0.0165 T23: 0.0910 REMARK 3 L TENSOR REMARK 3 L11: 3.5588 L22: 5.5135 REMARK 3 L33: 6.3767 L12: 1.5472 REMARK 3 L13: 2.3878 L23: 3.1410 REMARK 3 S TENSOR REMARK 3 S11: -0.1254 S12: 0.3448 S13: 0.0357 REMARK 3 S21: -0.5046 S22: 0.0502 S23: -0.0201 REMARK 3 S31: -0.4771 S32: 0.1484 S33: -0.0331 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 143 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4090 8.2892 2.8033 REMARK 3 T TENSOR REMARK 3 T11: 0.1130 T22: 0.1336 REMARK 3 T33: 0.1687 T12: 0.0041 REMARK 3 T13: -0.0201 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 0.4746 L22: 0.6334 REMARK 3 L33: 3.2782 L12: -0.3416 REMARK 3 L13: -0.4725 L23: 0.8306 REMARK 3 S TENSOR REMARK 3 S11: -0.0613 S12: -0.0408 S13: -0.0075 REMARK 3 S21: 0.0220 S22: -0.0648 S23: 0.0246 REMARK 3 S31: -0.1100 S32: 0.0772 S33: 0.1152 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1773 10.5325 9.1573 REMARK 3 T TENSOR REMARK 3 T11: 0.1331 T22: 0.2019 REMARK 3 T33: 0.1740 T12: -0.0428 REMARK 3 T13: 0.0319 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 4.8042 L22: 5.3369 REMARK 3 L33: 6.1586 L12: -1.4095 REMARK 3 L13: 1.6677 L23: 2.0019 REMARK 3 S TENSOR REMARK 3 S11: 0.0368 S12: 0.0609 S13: -0.4008 REMARK 3 S21: -0.0698 S22: -0.1818 S23: 0.1830 REMARK 3 S31: -0.2611 S32: -0.2417 S33: 0.1418 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 261 THROUGH 289 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3262 7.6166 6.3091 REMARK 3 T TENSOR REMARK 3 T11: 0.2294 T22: 0.2138 REMARK 3 T33: 0.1753 T12: 0.0250 REMARK 3 T13: 0.0158 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 1.0163 L22: 1.0385 REMARK 3 L33: 2.5676 L12: -0.5019 REMARK 3 L13: -0.9559 L23: 1.6206 REMARK 3 S TENSOR REMARK 3 S11: -0.1675 S12: -0.1483 S13: -0.1576 REMARK 3 S21: 0.1959 S22: 0.0007 S23: 0.2298 REMARK 3 S31: 0.2295 S32: 0.0669 S33: 0.1346 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 290 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0122 -3.4353 -11.2257 REMARK 3 T TENSOR REMARK 3 T11: 0.1533 T22: 0.1365 REMARK 3 T33: 0.2150 T12: 0.0485 REMARK 3 T13: -0.0069 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 4.0549 L22: 3.2610 REMARK 3 L33: 5.5497 L12: 0.5580 REMARK 3 L13: -0.6569 L23: 0.1660 REMARK 3 S TENSOR REMARK 3 S11: -0.0520 S12: 0.1416 S13: -0.2257 REMARK 3 S21: 0.0129 S22: 0.0214 S23: -0.2874 REMARK 3 S31: 0.2776 S32: 0.2250 S33: 0.0886 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.6244 10.8317 -38.1076 REMARK 3 T TENSOR REMARK 3 T11: 0.1979 T22: 0.2785 REMARK 3 T33: 0.2653 T12: 0.0546 REMARK 3 T13: -0.0262 T23: 0.0556 REMARK 3 L TENSOR REMARK 3 L11: 1.5062 L22: 0.5168 REMARK 3 L33: 3.5417 L12: -0.0609 REMARK 3 L13: -1.0568 L23: 0.2936 REMARK 3 S TENSOR REMARK 3 S11: 0.0561 S12: 0.3847 S13: 0.1240 REMARK 3 S21: -0.1052 S22: 0.0396 S23: 0.1021 REMARK 3 S31: -0.1695 S32: -0.4358 S33: -0.0618 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 118 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7906 13.5698 -12.9069 REMARK 3 T TENSOR REMARK 3 T11: 0.1834 T22: 0.2014 REMARK 3 T33: 0.1681 T12: 0.0145 REMARK 3 T13: 0.0288 T23: -0.0896 REMARK 3 L TENSOR REMARK 3 L11: 4.2243 L22: 6.4323 REMARK 3 L33: 6.3048 L12: -0.7022 REMARK 3 L13: 0.7930 L23: -1.8138 REMARK 3 S TENSOR REMARK 3 S11: 0.0961 S12: -0.5146 S13: 0.2358 REMARK 3 S21: 0.4508 S22: 0.0018 S23: -0.0060 REMARK 3 S31: -0.1914 S32: 0.1046 S33: -0.1667 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 143 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9766 9.9846 -37.4786 REMARK 3 T TENSOR REMARK 3 T11: 0.1512 T22: 0.1613 REMARK 3 T33: 0.1883 T12: 0.0200 REMARK 3 T13: -0.0206 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 1.7194 L22: 0.4539 REMARK 3 L33: 2.6190 L12: 0.2785 REMARK 3 L13: -1.2627 L23: -0.4155 REMARK 3 S TENSOR REMARK 3 S11: 0.0597 S12: 0.1376 S13: 0.1999 REMARK 3 S21: -0.0510 S22: 0.0300 S23: 0.0432 REMARK 3 S31: -0.1878 S32: -0.0641 S33: -0.0383 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 261 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.6077 4.1596 -29.9510 REMARK 3 T TENSOR REMARK 3 T11: 0.1558 T22: 0.1524 REMARK 3 T33: 0.2060 T12: 0.0100 REMARK 3 T13: -0.0537 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 3.4785 L22: 1.2658 REMARK 3 L33: 4.3228 L12: 0.7880 REMARK 3 L13: -2.8116 L23: -0.8877 REMARK 3 S TENSOR REMARK 3 S11: -0.0851 S12: 0.1140 S13: -0.1256 REMARK 3 S21: -0.0429 S22: 0.0045 S23: 0.0640 REMARK 3 S31: 0.1773 S32: -0.0673 S33: 0.1103 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KRQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222415. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND[111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 712 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK 712 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37538 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.086 REMARK 200 RESOLUTION RANGE LOW (A) : 46.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.35700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.570 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 3KKJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M SODIUM FORMATE, 100 MM SODIUM REMARK 280 ACETATE PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.52300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ARG A 45 REMARK 465 SER A 46 REMARK 465 ASP A 47 REMARK 465 ALA A 48 REMARK 465 GLY A 49 REMARK 465 SER A 50 REMARK 465 LEU A 329 REMARK 465 GLU A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 465 HIS A 333 REMARK 465 HIS A 334 REMARK 465 HIS A 335 REMARK 465 HIS A 336 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 SER B 46 REMARK 465 ASP B 47 REMARK 465 ALA B 48 REMARK 465 GLY B 49 REMARK 465 GLY B 221 REMARK 465 ARG B 222 REMARK 465 ASP B 223 REMARK 465 ASP B 224 REMARK 465 THR B 225 REMARK 465 HIS B 331 REMARK 465 HIS B 332 REMARK 465 HIS B 333 REMARK 465 HIS B 334 REMARK 465 HIS B 335 REMARK 465 HIS B 336 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 631 O HOH B 637 1.94 REMARK 500 O GLU B 330 O HOH B 501 2.11 REMARK 500 O PRO A 266 O HOH A 501 2.15 REMARK 500 O THR B 194 O HOH B 502 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 637 O HOH B 632 1556 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 42 162.72 87.30 REMARK 500 ASP A 52 71.19 49.80 REMARK 500 TYR A 278 73.56 -119.46 REMARK 500 LEU A 305 -127.96 -138.56 REMARK 500 MET B 41 33.68 -95.99 REMARK 500 GLN B 136 -63.40 -103.04 REMARK 500 LEU B 305 -116.07 -129.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NDP A 401 REMARK 610 NDP B 401 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZCC RELATED DB: PDB REMARK 900 RENALASE IN COMPLEX WITH NADH DBREF1 5KRQ A 1 328 UNP A0A0P9WWR6_PSESH DBREF2 5KRQ A A0A0P9WWR6 1 328 DBREF1 5KRQ B 1 328 UNP A0A0P9WWR6_PSESH DBREF2 5KRQ B A0A0P9WWR6 1 328 SEQADV 5KRQ SER A 145 UNP A0A0P9WWR GLY 145 ENGINEERED MUTATION SEQADV 5KRQ LEU A 329 UNP A0A0P9WWR EXPRESSION TAG SEQADV 5KRQ GLU A 330 UNP A0A0P9WWR EXPRESSION TAG SEQADV 5KRQ HIS A 331 UNP A0A0P9WWR EXPRESSION TAG SEQADV 5KRQ HIS A 332 UNP A0A0P9WWR EXPRESSION TAG SEQADV 5KRQ HIS A 333 UNP A0A0P9WWR EXPRESSION TAG SEQADV 5KRQ HIS A 334 UNP A0A0P9WWR EXPRESSION TAG SEQADV 5KRQ HIS A 335 UNP A0A0P9WWR EXPRESSION TAG SEQADV 5KRQ HIS A 336 UNP A0A0P9WWR EXPRESSION TAG SEQADV 5KRQ SER B 145 UNP A0A0P9WWR GLY 145 ENGINEERED MUTATION SEQADV 5KRQ LEU B 329 UNP A0A0P9WWR EXPRESSION TAG SEQADV 5KRQ GLU B 330 UNP A0A0P9WWR EXPRESSION TAG SEQADV 5KRQ HIS B 331 UNP A0A0P9WWR EXPRESSION TAG SEQADV 5KRQ HIS B 332 UNP A0A0P9WWR EXPRESSION TAG SEQADV 5KRQ HIS B 333 UNP A0A0P9WWR EXPRESSION TAG SEQADV 5KRQ HIS B 334 UNP A0A0P9WWR EXPRESSION TAG SEQADV 5KRQ HIS B 335 UNP A0A0P9WWR EXPRESSION TAG SEQADV 5KRQ HIS B 336 UNP A0A0P9WWR EXPRESSION TAG SEQRES 1 A 336 MET THR VAL PRO ILE ALA ILE ILE GLY THR GLY ILE ALA SEQRES 2 A 336 GLY LEU SER ALA ALA GLN ALA LEU THR SER ALA GLY HIS SEQRES 3 A 336 GLN VAL HIS LEU PHE ASP LYS SER ARG GLY SER GLY GLY SEQRES 4 A 336 ARG MET SER SER LYS ARG SER ASP ALA GLY SER LEU ASP SEQRES 5 A 336 MET GLY ALA GLN TYR PHE THR ALA ARG ASP ARG ARG PHE SEQRES 6 A 336 ALA THR ALA VAL LYS GLN TRP GLN ALA GLN GLY HIS VAL SEQRES 7 A 336 SER GLU TRP THR PRO LEU LEU TYR ASN PHE HIS GLY GLY SEQRES 8 A 336 ARG LEU SER PRO SER PRO ASP GLU GLN VAL ARG TRP VAL SEQRES 9 A 336 GLY GLU PRO GLY MET SER ALA ILE THR ARG ALA MET ARG SEQRES 10 A 336 GLY ASP LEU PRO VAL SER PHE SER CYS ARG ILE THR ASP SEQRES 11 A 336 VAL PHE ARG GLY GLU GLN HIS TRP ASN LEU LEU ASP ALA SEQRES 12 A 336 GLU SER GLU ASN HIS GLY PRO PHE SER HIS VAL ILE ILE SEQRES 13 A 336 ALA THR PRO ALA PRO GLN ALA THR ALA LEU LEU ALA ALA SEQRES 14 A 336 ALA PRO LYS LEU ALA SER VAL VAL ALA GLY VAL LYS MET SEQRES 15 A 336 ASP PRO THR TRP ALA VAL ALA LEU ALA PHE GLU THR PRO SEQRES 16 A 336 LEU GLN THR PRO MET GLN GLY CYS PHE VAL GLN ASP SER SEQRES 17 A 336 PRO LEU ASP TRP LEU ALA ARG ASN ARG SER LYS PRO GLY SEQRES 18 A 336 ARG ASP ASP THR LEU ASP SER TRP VAL LEU HIS ALA THR SEQRES 19 A 336 SER GLN TRP SER ARG GLN ASN LEU ASP ALA SER ARG GLU SEQRES 20 A 336 GLN VAL ILE GLU HIS LEU HIS GLY ALA PHE ALA GLU LEU SEQRES 21 A 336 ILE ASP CYS ALA MET PRO ALA PRO VAL PHE SER LEU ALA SEQRES 22 A 336 HIS ARG TRP LEU TYR ALA ARG PRO ALA GLY SER HIS GLU SEQRES 23 A 336 TRP GLY ALA LEU SER ASP ALA ASP LEU GLY ILE TYR VAL SEQRES 24 A 336 CYS GLY ASP TRP CYS LEU SER GLY ARG VAL GLU GLY ALA SEQRES 25 A 336 TRP LEU SER GLY GLN GLU ALA ALA ARG ARG LEU LEU GLU SEQRES 26 A 336 HIS LEU GLN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 336 MET THR VAL PRO ILE ALA ILE ILE GLY THR GLY ILE ALA SEQRES 2 B 336 GLY LEU SER ALA ALA GLN ALA LEU THR SER ALA GLY HIS SEQRES 3 B 336 GLN VAL HIS LEU PHE ASP LYS SER ARG GLY SER GLY GLY SEQRES 4 B 336 ARG MET SER SER LYS ARG SER ASP ALA GLY SER LEU ASP SEQRES 5 B 336 MET GLY ALA GLN TYR PHE THR ALA ARG ASP ARG ARG PHE SEQRES 6 B 336 ALA THR ALA VAL LYS GLN TRP GLN ALA GLN GLY HIS VAL SEQRES 7 B 336 SER GLU TRP THR PRO LEU LEU TYR ASN PHE HIS GLY GLY SEQRES 8 B 336 ARG LEU SER PRO SER PRO ASP GLU GLN VAL ARG TRP VAL SEQRES 9 B 336 GLY GLU PRO GLY MET SER ALA ILE THR ARG ALA MET ARG SEQRES 10 B 336 GLY ASP LEU PRO VAL SER PHE SER CYS ARG ILE THR ASP SEQRES 11 B 336 VAL PHE ARG GLY GLU GLN HIS TRP ASN LEU LEU ASP ALA SEQRES 12 B 336 GLU SER GLU ASN HIS GLY PRO PHE SER HIS VAL ILE ILE SEQRES 13 B 336 ALA THR PRO ALA PRO GLN ALA THR ALA LEU LEU ALA ALA SEQRES 14 B 336 ALA PRO LYS LEU ALA SER VAL VAL ALA GLY VAL LYS MET SEQRES 15 B 336 ASP PRO THR TRP ALA VAL ALA LEU ALA PHE GLU THR PRO SEQRES 16 B 336 LEU GLN THR PRO MET GLN GLY CYS PHE VAL GLN ASP SER SEQRES 17 B 336 PRO LEU ASP TRP LEU ALA ARG ASN ARG SER LYS PRO GLY SEQRES 18 B 336 ARG ASP ASP THR LEU ASP SER TRP VAL LEU HIS ALA THR SEQRES 19 B 336 SER GLN TRP SER ARG GLN ASN LEU ASP ALA SER ARG GLU SEQRES 20 B 336 GLN VAL ILE GLU HIS LEU HIS GLY ALA PHE ALA GLU LEU SEQRES 21 B 336 ILE ASP CYS ALA MET PRO ALA PRO VAL PHE SER LEU ALA SEQRES 22 B 336 HIS ARG TRP LEU TYR ALA ARG PRO ALA GLY SER HIS GLU SEQRES 23 B 336 TRP GLY ALA LEU SER ASP ALA ASP LEU GLY ILE TYR VAL SEQRES 24 B 336 CYS GLY ASP TRP CYS LEU SER GLY ARG VAL GLU GLY ALA SEQRES 25 B 336 TRP LEU SER GLY GLN GLU ALA ALA ARG ARG LEU LEU GLU SEQRES 26 B 336 HIS LEU GLN LEU GLU HIS HIS HIS HIS HIS HIS HET FAD A 400 84 HET NDP A 401 46 HET FAD B 400 84 HET NDP B 401 46 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 NDP 2(C21 H30 N7 O17 P3) FORMUL 7 HOH *279(H2 O) HELIX 1 AA1 GLY A 11 ALA A 24 1 14 HELIX 2 AA2 GLY A 38 SER A 42 5 5 HELIX 3 AA3 ASP A 62 GLN A 75 1 14 HELIX 4 AA4 SER A 110 GLY A 118 1 9 HELIX 5 AA5 PRO A 159 ALA A 165 1 7 HELIX 6 AA6 LEU A 166 ALA A 168 5 3 HELIX 7 AA7 ALA A 170 GLY A 179 1 10 HELIX 8 AA8 ARG A 217 LYS A 219 5 3 HELIX 9 AA9 THR A 234 ASN A 241 1 8 HELIX 10 AB1 SER A 245 ILE A 261 1 17 HELIX 11 AB2 GLY A 301 LEU A 305 5 5 HELIX 12 AB3 ARG A 308 GLN A 328 1 21 HELIX 13 AB4 GLY B 11 ALA B 24 1 14 HELIX 14 AB5 GLY B 38 MET B 41 5 4 HELIX 15 AB6 ASP B 62 GLN B 75 1 14 HELIX 16 AB7 MET B 109 GLY B 118 1 10 HELIX 17 AB8 PRO B 159 ALA B 165 1 7 HELIX 18 AB9 ALA B 170 GLY B 179 1 10 HELIX 19 AC1 ARG B 217 LYS B 219 5 3 HELIX 20 AC2 THR B 234 ASN B 241 1 8 HELIX 21 AC3 SER B 245 ILE B 261 1 17 HELIX 22 AC4 GLY B 301 LEU B 305 5 5 HELIX 23 AC5 ARG B 308 LEU B 327 1 20 HELIX 24 AC6 GLN B 328 GLU B 330 5 3 SHEET 1 AA1 6 VAL A 122 SER A 123 0 SHEET 2 AA1 6 VAL A 28 PHE A 31 1 N LEU A 30 O SER A 123 SHEET 3 AA1 6 ILE A 5 ILE A 8 1 N ILE A 5 O HIS A 29 SHEET 4 AA1 6 VAL A 154 ILE A 156 1 O ILE A 155 N ILE A 8 SHEET 5 AA1 6 ILE A 297 VAL A 299 1 O TYR A 298 N ILE A 156 SHEET 6 AA1 6 LEU A 290 ASP A 292 -1 N LEU A 290 O VAL A 299 SHEET 1 AA2 2 VAL A 78 TRP A 81 0 SHEET 2 AA2 2 ARG A 102 GLY A 105 -1 O ARG A 102 N TRP A 81 SHEET 1 AA3 7 ARG A 92 PRO A 95 0 SHEET 2 AA3 7 LEU A 85 HIS A 89 -1 N ASN A 87 O SER A 94 SHEET 3 AA3 7 GLY A 202 VAL A 205 1 O PHE A 204 N PHE A 88 SHEET 4 AA3 7 LEU A 210 ARG A 215 -1 O ASP A 211 N VAL A 205 SHEET 5 AA3 7 ASP A 227 ALA A 233 -1 O HIS A 232 N TRP A 212 SHEET 6 AA3 7 MET A 182 PHE A 192 -1 N LEU A 190 O TRP A 229 SHEET 7 AA3 7 PHE A 270 PRO A 281 -1 O ARG A 280 N ASP A 183 SHEET 1 AA4 3 ILE A 128 ARG A 133 0 SHEET 2 AA4 3 TRP A 138 ASP A 142 -1 O LEU A 141 N THR A 129 SHEET 3 AA4 3 ASN A 147 PHE A 151 -1 O PHE A 151 N TRP A 138 SHEET 1 AA5 6 VAL B 122 SER B 123 0 SHEET 2 AA5 6 VAL B 28 PHE B 31 1 N LEU B 30 O SER B 123 SHEET 3 AA5 6 ILE B 5 ILE B 8 1 N ILE B 7 O HIS B 29 SHEET 4 AA5 6 HIS B 153 ILE B 156 1 O ILE B 155 N ILE B 8 SHEET 5 AA5 6 ILE B 297 VAL B 299 1 O TYR B 298 N ILE B 156 SHEET 6 AA5 6 LEU B 290 ASP B 292 -1 N LEU B 290 O VAL B 299 SHEET 1 AA6 2 SER B 43 LYS B 44 0 SHEET 2 AA6 2 LEU B 51 ASP B 52 -1 O LEU B 51 N LYS B 44 SHEET 1 AA7 2 VAL B 78 TRP B 81 0 SHEET 2 AA7 2 ARG B 102 GLY B 105 -1 O ARG B 102 N TRP B 81 SHEET 1 AA8 7 ARG B 92 PRO B 95 0 SHEET 2 AA8 7 LEU B 85 HIS B 89 -1 N ASN B 87 O SER B 94 SHEET 3 AA8 7 GLY B 202 VAL B 205 1 O PHE B 204 N TYR B 86 SHEET 4 AA8 7 LEU B 210 ARG B 215 -1 O ASP B 211 N VAL B 205 SHEET 5 AA8 7 ASP B 227 ALA B 233 -1 O HIS B 232 N ASP B 211 SHEET 6 AA8 7 MET B 182 PHE B 192 -1 N VAL B 188 O LEU B 231 SHEET 7 AA8 7 PHE B 270 PRO B 281 -1 O ARG B 280 N ASP B 183 SHEET 1 AA9 3 ILE B 128 ARG B 133 0 SHEET 2 AA9 3 TRP B 138 ASP B 142 -1 O LEU B 141 N THR B 129 SHEET 3 AA9 3 ASN B 147 PHE B 151 -1 O PHE B 151 N TRP B 138 CISPEP 1 GLU A 106 PRO A 107 0 9.44 CISPEP 2 GLY A 149 PRO A 150 0 1.27 CISPEP 3 GLU B 106 PRO B 107 0 7.18 CISPEP 4 GLY B 149 PRO B 150 0 2.82 SITE 1 AC1 40 ILE A 8 GLY A 9 GLY A 11 ILE A 12 SITE 2 AC1 40 ALA A 13 ASP A 32 LYS A 33 SER A 34 SITE 3 AC1 40 GLY A 39 ARG A 40 GLY A 54 ALA A 55 SITE 4 AC1 40 GLN A 56 TYR A 57 CYS A 126 ILE A 128 SITE 5 AC1 40 ALA A 157 THR A 158 PRO A 159 GLN A 162 SITE 6 AC1 40 THR A 185 HIS A 232 ALA A 279 ARG A 280 SITE 7 AC1 40 GLY A 301 ASP A 302 GLY A 307 ARG A 308 SITE 8 AC1 40 VAL A 309 ALA A 312 NDP A 401 HOH A 513 SITE 9 AC1 40 HOH A 515 HOH A 516 HOH A 522 HOH A 532 SITE 10 AC1 40 HOH A 544 HOH A 549 HOH A 556 HOH A 562 SITE 1 AC2 12 TYR A 57 THR A 59 ARG A 61 SER A 96 SITE 2 AC2 12 ASP A 98 ARG A 102 PHE A 204 GLN A 206 SITE 3 AC2 12 ARG A 308 FAD A 400 HOH A 513 HOH A 559 SITE 1 AC3 40 GLY B 9 GLY B 11 ILE B 12 ALA B 13 SITE 2 AC3 40 ASP B 32 LYS B 33 SER B 34 GLY B 38 SITE 3 AC3 40 GLY B 39 ARG B 40 MET B 41 GLY B 54 SITE 4 AC3 40 ALA B 55 GLN B 56 TYR B 57 CYS B 126 SITE 5 AC3 40 ARG B 127 ILE B 128 ALA B 157 THR B 158 SITE 6 AC3 40 PRO B 159 GLN B 162 HIS B 232 TRP B 276 SITE 7 AC3 40 ALA B 279 ARG B 280 GLY B 301 ASP B 302 SITE 8 AC3 40 ARG B 308 VAL B 309 ALA B 312 NDP B 401 SITE 9 AC3 40 HOH B 519 HOH B 530 HOH B 533 HOH B 534 SITE 10 AC3 40 HOH B 540 HOH B 556 HOH B 558 HOH B 599 SITE 1 AC4 14 TYR B 57 THR B 59 ARG B 61 SER B 96 SITE 2 AC4 14 ASP B 98 ARG B 102 PHE B 204 GLN B 206 SITE 3 AC4 14 ARG B 308 FAD B 400 HOH B 509 HOH B 534 SITE 4 AC4 14 HOH B 544 HOH B 565 CRYST1 63.445 71.046 74.807 90.00 107.79 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015762 0.000000 0.005057 0.00000 SCALE2 0.000000 0.014075 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014039 0.00000