HEADER HYDROLASE, TRANSFERASE/INHIBITOR 07-JUL-16 5KRS TITLE HIV-1 INTEGRASE CATALYTIC CORE DOMAIN IN COMPLEX WITH AN ALLOSTERIC TITLE 2 INHIBITOR, 3-(1H-PYRROL-1-YL)-2-THIOPHENECARBOXYLIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIV-1 INTEGRASE CATALYTIC CORE DOMAIN, P75/LEDGF INHIBITOR, KEYWDS 2 HYDROLASE, TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.PATEL,J.D.BAUMAN,E.ARNOLD REVDAT 5 23-OCT-24 5KRS 1 REMARK REVDAT 4 23-MAR-22 5KRS 1 JRNL REMARK REVDAT 3 16-NOV-16 5KRS 1 JRNL REVDAT 2 05-OCT-16 5KRS 1 JRNL REVDAT 1 28-SEP-16 5KRS 0 JRNL AUTH D.PATEL,J.ANTWI,P.C.KONERU,E.SERRAO,S.FORLI,J.J.KESSL, JRNL AUTH 2 L.FENG,N.DENG,R.M.LEVY,J.R.FUCHS,A.J.OLSON,A.N.ENGELMAN, JRNL AUTH 3 J.D.BAUMAN,M.KVARATSKHELIA,E.ARNOLD JRNL TITL A NEW CLASS OF ALLOSTERIC HIV-1 INTEGRASE INHIBITORS JRNL TITL 2 IDENTIFIED BY CRYSTALLOGRAPHIC FRAGMENT SCREENING OF THE JRNL TITL 3 CATALYTIC CORE DOMAIN. JRNL REF J.BIOL.CHEM. V. 291 23569 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27645997 JRNL DOI 10.1074/JBC.M116.753384 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2-1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 42443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.9620 - 5.0959 0.94 1369 134 0.1857 0.1948 REMARK 3 2 5.0959 - 4.0466 0.96 1400 133 0.1510 0.1726 REMARK 3 3 4.0466 - 3.5356 0.97 1400 142 0.1463 0.1711 REMARK 3 4 3.5356 - 3.2125 0.97 1435 137 0.1681 0.2020 REMARK 3 5 3.2125 - 2.9824 0.97 1392 152 0.1575 0.1818 REMARK 3 6 2.9824 - 2.8066 0.98 1430 138 0.1625 0.1539 REMARK 3 7 2.8066 - 2.6661 0.98 1396 140 0.1572 0.1797 REMARK 3 8 2.6661 - 2.5501 0.98 1435 143 0.1500 0.1633 REMARK 3 9 2.5501 - 2.4519 0.98 1454 128 0.1561 0.1797 REMARK 3 10 2.4519 - 2.3674 0.99 1443 138 0.1573 0.1782 REMARK 3 11 2.3674 - 2.2933 0.99 1403 142 0.1544 0.1516 REMARK 3 12 2.2933 - 2.2278 0.99 1450 152 0.1442 0.1671 REMARK 3 13 2.2278 - 2.1692 1.00 1421 145 0.1555 0.1411 REMARK 3 14 2.1692 - 2.1162 1.00 1431 142 0.1611 0.2033 REMARK 3 15 2.1162 - 2.0681 0.99 1451 146 0.1647 0.1604 REMARK 3 16 2.0681 - 2.0241 0.99 1453 136 0.1634 0.1775 REMARK 3 17 2.0241 - 1.9836 1.00 1447 128 0.1728 0.1869 REMARK 3 18 1.9836 - 1.9462 1.00 1404 144 0.1813 0.2115 REMARK 3 19 1.9462 - 1.9115 0.99 1479 146 0.1829 0.1828 REMARK 3 20 1.9115 - 1.8791 1.00 1455 148 0.1957 0.1929 REMARK 3 21 1.8791 - 1.8488 0.99 1425 140 0.2020 0.2243 REMARK 3 22 1.8488 - 1.8203 0.99 1431 142 0.2083 0.2684 REMARK 3 23 1.8203 - 1.7935 1.00 1447 146 0.2264 0.2492 REMARK 3 24 1.7935 - 1.7683 0.99 1436 135 0.2283 0.2746 REMARK 3 25 1.7683 - 1.7444 1.00 1475 154 0.2413 0.3056 REMARK 3 26 1.7444 - 1.7217 0.99 1447 143 0.2497 0.2226 REMARK 3 27 1.7217 - 1.7002 0.98 1419 141 0.2580 0.2944 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1211 REMARK 3 ANGLE : 1.185 1641 REMARK 3 CHIRALITY : 0.063 179 REMARK 3 PLANARITY : 0.006 205 REMARK 3 DIHEDRAL : 15.270 694 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.3357 130.7834 12.7451 REMARK 3 T TENSOR REMARK 3 T11: 0.1593 T22: 0.1288 REMARK 3 T33: 0.1583 T12: -0.0075 REMARK 3 T13: -0.0100 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.6321 L22: 1.8134 REMARK 3 L33: 1.1169 L12: -1.0714 REMARK 3 L13: 0.1454 L23: -0.1394 REMARK 3 S TENSOR REMARK 3 S11: -0.0506 S12: 0.1164 S13: -0.0434 REMARK 3 S21: -0.2306 S22: 0.0221 S23: 0.0351 REMARK 3 S31: -0.0367 S32: 0.0180 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0079 132.8649 22.8717 REMARK 3 T TENSOR REMARK 3 T11: 0.1383 T22: 0.1602 REMARK 3 T33: 0.1521 T12: 0.0119 REMARK 3 T13: -0.0023 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.3995 L22: 0.3577 REMARK 3 L33: 0.5734 L12: -0.5571 REMARK 3 L13: 0.5840 L23: -0.3409 REMARK 3 S TENSOR REMARK 3 S11: 0.1543 S12: 0.0593 S13: -0.2460 REMARK 3 S21: -0.0834 S22: -0.0111 S23: 0.1155 REMARK 3 S31: 0.0592 S32: -0.0547 S33: 0.0469 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 108 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.8684 141.4561 16.6216 REMARK 3 T TENSOR REMARK 3 T11: 0.1986 T22: 0.1736 REMARK 3 T33: 0.1432 T12: -0.0093 REMARK 3 T13: -0.0123 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 0.6162 L22: 0.5404 REMARK 3 L33: 0.4394 L12: -0.3476 REMARK 3 L13: 0.4793 L23: -0.2795 REMARK 3 S TENSOR REMARK 3 S11: -0.0345 S12: 0.1921 S13: 0.1345 REMARK 3 S21: -0.1275 S22: -0.0521 S23: -0.0810 REMARK 3 S31: -0.1791 S32: 0.1258 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.6260 122.0470 4.4766 REMARK 3 T TENSOR REMARK 3 T11: 0.4693 T22: 0.3176 REMARK 3 T33: 0.2371 T12: 0.0479 REMARK 3 T13: -0.0370 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.5248 L22: 0.3207 REMARK 3 L33: 0.5041 L12: -0.1796 REMARK 3 L13: 0.0903 L23: 0.0786 REMARK 3 S TENSOR REMARK 3 S11: 0.0142 S12: 0.4415 S13: 0.1161 REMARK 3 S21: -0.8747 S22: -0.0313 S23: 0.1019 REMARK 3 S31: -0.0157 S32: 0.3310 S33: 0.0038 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 169 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.8393 117.2880 13.1044 REMARK 3 T TENSOR REMARK 3 T11: 0.1625 T22: 0.1101 REMARK 3 T33: 0.2011 T12: -0.0024 REMARK 3 T13: -0.0274 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 1.0141 L22: 0.2557 REMARK 3 L33: 0.6594 L12: -0.2035 REMARK 3 L13: 0.3403 L23: -0.1716 REMARK 3 S TENSOR REMARK 3 S11: 0.2134 S12: 0.0459 S13: -0.2336 REMARK 3 S21: -0.3729 S22: -0.0282 S23: 0.3390 REMARK 3 S31: 0.2286 S32: -0.0589 S33: 0.0618 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.5357 122.8248 14.0650 REMARK 3 T TENSOR REMARK 3 T11: 0.1625 T22: 0.2624 REMARK 3 T33: 0.2975 T12: 0.0301 REMARK 3 T13: 0.0280 T23: -0.0801 REMARK 3 L TENSOR REMARK 3 L11: 0.2842 L22: 0.5323 REMARK 3 L33: 1.5076 L12: -0.1952 REMARK 3 L13: 0.0995 L23: 0.2061 REMARK 3 S TENSOR REMARK 3 S11: -0.0839 S12: 0.2079 S13: -0.0505 REMARK 3 S21: -0.1101 S22: 0.2581 S23: -0.6022 REMARK 3 S31: -0.0742 S32: 0.4771 S33: -0.0095 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KRS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222145. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.917 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42447 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 35.954 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 MM MANGANESE CHLORIDE, 100 MM MES PH REMARK 280 6.7, 10% (W/V) PEG 8000, AND 5 MM DTT, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.56133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.12267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.12267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.56133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 445 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 146 REMARK 465 SER A 147 REMARK 465 GLN A 148 REMARK 465 GLY A 190 REMARK 465 ILE A 191 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C ASP A 64 H CAF A 65 1.36 REMARK 500 HE22 GLN A 164 O HOH A 402 1.53 REMARK 500 O HOH A 466 O HOH A 518 1.84 REMARK 500 O HOH A 493 O HOH A 497 1.89 REMARK 500 O HOH A 517 O HOH A 520 1.96 REMARK 500 O HOH A 502 O HOH A 516 2.05 REMARK 500 O HOH A 418 O HOH A 502 2.05 REMARK 500 O HOH A 453 O HOH A 474 2.08 REMARK 500 O HOH A 513 O HOH A 530 2.09 REMARK 500 O HOH A 503 O HOH A 520 2.10 REMARK 500 O HOH A 404 O HOH A 460 2.12 REMARK 500 O HOH A 508 O HOH A 527 2.14 REMARK 500 O HOH A 493 O HOH A 506 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 504 O HOH A 515 2985 1.55 REMARK 500 O HOH A 465 O HOH A 480 5795 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 56 -14.66 -144.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 536 DISTANCE = 6.26 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6XI A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6XI A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KRB RELATED DB: PDB DBREF 5KRS A 57 207 UNP Q76353 Q76353_9HIV1 57 207 SEQADV 5KRS ASP A 55 UNP Q76353 EXPRESSION TAG SEQADV 5KRS SER A 56 UNP Q76353 EXPRESSION TAG SEQADV 5KRS LYS A 185 UNP Q76353 PHE 185 ENGINEERED MUTATION SEQRES 1 A 153 ASP SER SER PRO GLY ILE TRP GLN LEU ASP CAF THR HIS SEQRES 2 A 153 LEU GLU GLY LYS VAL ILE LEU VAL ALA VAL HIS VAL ALA SEQRES 3 A 153 SER GLY TYR ILE GLU ALA GLU VAL ILE PRO ALA GLU THR SEQRES 4 A 153 GLY GLN GLU THR ALA TYR PHE LEU LEU LYS LEU ALA GLY SEQRES 5 A 153 ARG TRP PRO VAL LYS THR VAL HIS THR ASP ASN GLY SER SEQRES 6 A 153 ASN PHE THR SER THR THR VAL LYS ALA ALA CAF TRP TRP SEQRES 7 A 153 ALA GLY ILE LYS GLN GLU PHE GLY ILE PRO TYR ASN PRO SEQRES 8 A 153 GLN SER GLN GLY VAL ILE GLU SER MET ASN LYS GLU LEU SEQRES 9 A 153 LYS LYS ILE ILE GLY GLN VAL ARG ASP GLN ALA GLU HIS SEQRES 10 A 153 LEU LYS THR ALA VAL GLN MET ALA VAL PHE ILE HIS ASN SEQRES 11 A 153 LYS LYS ARG LYS GLY GLY ILE GLY GLY TYR SER ALA GLY SEQRES 12 A 153 GLU ARG ILE VAL ASP ILE ILE ALA THR ASP MODRES 5KRS CAF A 65 CYS MODIFIED RESIDUE MODRES 5KRS CAF A 130 CYS MODIFIED RESIDUE HET CAF A 65 20 HET CAF A 130 20 HET DMS A 301 10 HET 6XI A 302 19 HET 6XI A 303 19 HETNAM CAF S-DIMETHYLARSINOYL-CYSTEINE HETNAM DMS DIMETHYL SULFOXIDE HETNAM 6XI 3-PYRROL-1-YLTHIOPHENE-2-CARBOXYLIC ACID HETSYN CAF CYSTEIN-S-YL CACODYLATE FORMUL 1 CAF 2(C5 H12 AS N O3 S) FORMUL 2 DMS C2 H6 O S FORMUL 3 6XI 2(C9 H7 N O2 S) FORMUL 5 HOH *136(H2 O) HELIX 1 AA1 THR A 93 TRP A 108 1 16 HELIX 2 AA2 ASN A 117 THR A 122 5 6 HELIX 3 AA3 SER A 123 GLY A 134 1 12 HELIX 4 AA4 VAL A 150 ARG A 166 1 17 HELIX 5 AA5 ASP A 167 ALA A 169 5 3 HELIX 6 AA6 HIS A 171 LYS A 186 1 16 HELIX 7 AA7 SER A 195 ASP A 207 1 13 SHEET 1 AA1 5 ILE A 84 ILE A 89 0 SHEET 2 AA1 5 LYS A 71 HIS A 78 -1 N ALA A 76 O GLU A 85 SHEET 3 AA1 5 ILE A 60 LEU A 68 -1 N THR A 66 O ILE A 73 SHEET 4 AA1 5 THR A 112 HIS A 114 1 O HIS A 114 N LEU A 63 SHEET 5 AA1 5 LYS A 136 GLN A 137 1 O LYS A 136 N VAL A 113 LINK C ASP A 64 N CAF A 65 1555 1555 1.34 LINK C CAF A 65 N THR A 66 1555 1555 1.33 LINK C ALA A 129 N CAF A 130 1555 1555 1.34 LINK C CAF A 130 N TRP A 131 1555 1555 1.32 SITE 1 AC1 1 TRP A 131 SITE 1 AC2 12 CAF A 65 GLU A 92 THR A 93 GLY A 94 SITE 2 AC2 12 SER A 119 ASN A 120 THR A 122 SER A 123 SITE 3 AC2 12 HOH A 419 HOH A 448 HOH A 467 HOH A 485 SITE 1 AC3 3 GLU A 170 HOH A 401 HOH A 438 CRYST1 71.908 71.908 67.684 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013907 0.008029 0.000000 0.00000 SCALE2 0.000000 0.016058 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014775 0.00000