HEADER TRANSFERASE 07-JUL-16 5KS5 TITLE STRUCTURE OF THE C-TERMINAL HELICAL REPEAT DOMAIN OF ELONGATION FACTOR TITLE 2 2 KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC ELONGATION FACTOR 2 KINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 627-725; COMPND 5 SYNONYM: EEF-2K,CALCIUM/CALMODULIN-DEPENDENT EUKARYOTIC ELONGATION COMPND 6 FACTOR 2 KINASE; COMPND 7 EC: 2.7.11.20; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EEF2K; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET15B; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: S3 KEYWDS TRANSFERASE, EEF2K, SEL1, ELONGATION, TPR EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.PISERCHIO,N.WILL,I.SNYDER,S.B.FERGUSON,D.H.GILES,K.N.DALBY,R.GHOSE REVDAT 6 14-JUN-23 5KS5 1 REMARK REVDAT 5 25-DEC-19 5KS5 1 REMARK REVDAT 4 17-JAN-18 5KS5 1 REMARK REVDAT 3 27-SEP-17 5KS5 1 COMPND JRNL REVDAT 2 12-OCT-16 5KS5 1 JRNL REVDAT 1 14-SEP-16 5KS5 0 JRNL AUTH N.WILL,A.PISERCHIO,I.SNYDER,S.B.FERGUSON,D.H.GILES, JRNL AUTH 2 K.N.DALBY,R.GHOSE JRNL TITL STRUCTURE OF THE C-TERMINAL HELICAL REPEAT DOMAIN OF JRNL TITL 2 EUKARYOTIC ELONGATION FACTOR 2 KINASE. JRNL REF BIOCHEMISTRY V. 55 5377 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 27571275 JRNL DOI 10.1021/ACS.BIOCHEM.6B00711 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KS5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222631. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.15; 298.15 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 50 MM SODIUM PHOSPHATE; 50 MM REMARK 210 SODIUM PHOSPHATE REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 600 UM [U-99% 13C; U-99% 15N] REMARK 210 EEF2K_627-725, 50 MM SODIUM REMARK 210 PHOSPHATE, 4 MM DTT, 95% H2O/5% REMARK 210 D2O; 300 UM [U-99% 13C; U-99% REMARK 210 15N] EEF2K_627-725, 50 MM SODIUM REMARK 210 PHOSPHATE, 4 MM DTT, 100% D2O; REMARK 210 300 UM [U-99% 13C; U-99% 1 EEF2K_ REMARK 210 627-725, 15 MG/ML PF1 PHAGE REMARK 210 (ASLA LTD), 50 MM SODIUM REMARK 210 PHOSPHATE, 4 MM DTT, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCO; HNCACO; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; H(CC)CONH; (H)CCCONH; REMARK 210 3D HCCH-TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 15N NOESY AROMATIC; 2D 1H-1H REMARK 210 NOESY; 15N IPAP REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW, TALOS, REMARK 210 PROCHECKNMR, WHAT IF REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 630 47.37 -91.87 REMARK 500 1 TYR A 641 171.08 67.43 REMARK 500 1 ALA A 644 -59.92 68.64 REMARK 500 1 THR A 648 -169.19 -118.66 REMARK 500 1 ASP A 657 117.54 -171.13 REMARK 500 1 GLN A 660 48.98 -97.78 REMARK 500 2 SER A 624 -40.65 -158.17 REMARK 500 2 GLN A 632 -55.87 -133.57 REMARK 500 2 ASN A 642 60.31 -100.45 REMARK 500 2 ALA A 644 -58.93 71.09 REMARK 500 2 ASP A 649 64.07 -109.80 REMARK 500 2 GLN A 660 49.74 -98.31 REMARK 500 2 LYS A 705 74.08 -106.33 REMARK 500 2 MET A 723 62.26 -66.91 REMARK 500 2 GLU A 724 31.63 -152.57 REMARK 500 3 MET A 626 130.76 70.74 REMARK 500 3 ARG A 630 50.63 -96.41 REMARK 500 3 TYR A 641 70.97 -69.28 REMARK 500 3 ASN A 642 58.67 -100.85 REMARK 500 3 ASP A 649 76.28 -103.58 REMARK 500 3 CYS A 650 23.02 -146.46 REMARK 500 3 TYR A 680 92.94 -67.76 REMARK 500 3 MET A 723 -63.90 63.55 REMARK 500 4 ARG A 630 43.19 -90.43 REMARK 500 4 CYS A 631 47.40 -79.34 REMARK 500 4 GLN A 632 -33.51 -131.45 REMARK 500 4 ALA A 644 -27.80 72.66 REMARK 500 4 MET A 704 -2.84 69.47 REMARK 500 4 GLU A 724 77.34 -169.21 REMARK 500 5 ARG A 630 43.42 -82.76 REMARK 500 5 ASP A 661 146.81 72.31 REMARK 500 5 MET A 723 44.78 35.48 REMARK 500 5 GLU A 724 76.97 -164.58 REMARK 500 6 TYR A 641 -170.20 58.70 REMARK 500 6 ASN A 642 75.17 59.49 REMARK 500 6 THR A 643 58.76 -147.11 REMARK 500 6 ASP A 657 -67.82 -131.25 REMARK 500 6 MET A 659 89.57 -60.31 REMARK 500 6 ASP A 661 -91.08 -104.41 REMARK 500 6 LYS A 705 65.14 -112.51 REMARK 500 7 HIS A 625 -44.91 -144.39 REMARK 500 7 GLN A 632 -77.34 -135.04 REMARK 500 7 ASN A 642 49.04 -80.32 REMARK 500 7 ALA A 644 -60.40 -90.60 REMARK 500 7 THR A 648 95.88 -66.75 REMARK 500 7 ASP A 649 54.64 -108.64 REMARK 500 7 GLU A 662 107.89 -58.35 REMARK 500 7 LYS A 705 76.25 -102.07 REMARK 500 7 MET A 723 55.38 30.54 REMARK 500 7 GLU A 724 -1.23 -144.13 REMARK 500 REMARK 500 THIS ENTRY HAS 152 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30135 RELATED DB: BMRB DBREF 5KS5 A 627 725 UNP O00418 EF2K_HUMAN 627 725 SEQADV 5KS5 GLY A 623 UNP O00418 EXPRESSION TAG SEQADV 5KS5 SER A 624 UNP O00418 EXPRESSION TAG SEQADV 5KS5 HIS A 625 UNP O00418 EXPRESSION TAG SEQADV 5KS5 MET A 626 UNP O00418 EXPRESSION TAG SEQRES 1 A 103 GLY SER HIS MET SER PRO ASP ARG CYS GLN ASP TRP LEU SEQRES 2 A 103 GLU ALA LEU HIS TRP TYR ASN THR ALA LEU GLU MET THR SEQRES 3 A 103 ASP CYS ASP GLU GLY GLY GLU TYR ASP GLY MET GLN ASP SEQRES 4 A 103 GLU PRO ARG TYR MET MET LEU ALA ARG GLU ALA GLU MET SEQRES 5 A 103 LEU PHE THR GLY GLY TYR GLY LEU GLU LYS ASP PRO GLN SEQRES 6 A 103 ARG SER GLY ASP LEU TYR THR GLN ALA ALA GLU ALA ALA SEQRES 7 A 103 MET GLU ALA MET LYS GLY ARG LEU ALA ASN GLN TYR TYR SEQRES 8 A 103 GLN LYS ALA GLU GLU ALA TRP ALA GLN MET GLU GLU HELIX 1 AA1 GLN A 632 TYR A 641 1 10 HELIX 2 AA2 PRO A 663 THR A 677 1 15 HELIX 3 AA3 ASP A 685 ALA A 703 1 19 HELIX 4 AA4 LYS A 705 GLN A 722 1 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1