HEADER HYDROLASE 08-JUL-16 5KSP TITLE HMIRO1 C-DOMAIN GDP COMPLEX C2221 CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIAL RHO GTPASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL GTPASE DOMAIN (UNP RESIDUES 411-592); COMPND 5 SYNONYM: HMIRO-1,RAC-GTP-BINDING PROTEIN-LIKE PROTEIN,RAS HOMOLOG COMPND 6 GENE FAMILY MEMBER T1; COMPND 7 EC: 3.6.5.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RHOT1, ARHT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MIRO, GTPASE, PARKIN, MITOCHONDRIA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.L.KLOSOWIAK,P.J.FOCIA,S.E.RICE,D.M.FREYMANN REVDAT 3 04-OCT-23 5KSP 1 REMARK REVDAT 2 22-NOV-17 5KSP 1 REMARK REVDAT 1 21-SEP-16 5KSP 0 JRNL AUTH J.L.KLOSOWIAK,S.PARK,K.P.SMITH,M.E.FRENCH,P.J.FOCIA, JRNL AUTH 2 D.M.FREYMANN,S.E.RICE JRNL TITL STRUCTURAL INSIGHTS INTO PARKIN SUBSTRATE LYSINE TARGETING JRNL TITL 2 FROM MINIMAL MIRO SUBSTRATES. JRNL REF SCI REP V. 6 33019 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27605430 JRNL DOI 10.1038/SREP33019 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.540 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 1951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8890 - 5.2093 1.00 2593 109 0.1904 0.2860 REMARK 3 2 5.2093 - 4.1354 1.00 2554 126 0.1502 0.1738 REMARK 3 3 4.1354 - 3.6129 1.00 2550 151 0.1529 0.1625 REMARK 3 4 3.6129 - 3.2826 1.00 2536 135 0.1707 0.2386 REMARK 3 5 3.2826 - 3.0474 1.00 2569 158 0.1930 0.2397 REMARK 3 6 3.0474 - 2.8677 1.00 2536 156 0.2125 0.2794 REMARK 3 7 2.8677 - 2.7241 1.00 2506 169 0.2128 0.2421 REMARK 3 8 2.7241 - 2.6056 1.00 2578 129 0.2187 0.2850 REMARK 3 9 2.6056 - 2.5053 1.00 2581 133 0.2217 0.2989 REMARK 3 10 2.5053 - 2.4188 1.00 2552 132 0.2161 0.3148 REMARK 3 11 2.4188 - 2.3432 1.00 2526 116 0.2210 0.2903 REMARK 3 12 2.3432 - 2.2762 1.00 2575 164 0.2293 0.2766 REMARK 3 13 2.2762 - 2.2163 1.00 2605 120 0.2563 0.3047 REMARK 3 14 2.2163 - 2.1622 1.00 2551 153 0.2753 0.2886 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2625 REMARK 3 ANGLE : 0.616 3556 REMARK 3 CHIRALITY : 0.025 398 REMARK 3 PLANARITY : 0.003 440 REMARK 3 DIHEDRAL : 13.958 984 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KSP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222692. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978560 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.1.0 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19991 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 75.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.00 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 2.5.6 REMARK 200 STARTING MODEL: PDB ENTRY 4C0L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15 MG/ML PROTEIN, 6 MM MAGNESIUM REMARK 280 CHLORIDE, 0.1 M TRIS, PH 8.5, 12% W/V PEG4000, GDP OBSERVED IN REMARK 280 THE STRUCTURE WAS CARRIED THROUGH FROM THE EXPRESSION SYSTEM REMARK 280 DURING PURIFICATION, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.88000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.88000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.03500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.32000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.03500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.32000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.88000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.03500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 36.32000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 75.88000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.03500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 36.32000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 411 REMARK 465 LYS A 412 REMARK 465 GLN A 413 REMARK 465 THR A 414 REMARK 465 GLN A 415 REMARK 465 ARG A 416 REMARK 465 GLU A 451 REMARK 465 ASP A 452 REMARK 465 HIS A 453 REMARK 465 LYS A 454 REMARK 465 HIS A 581 REMARK 465 VAL A 582 REMARK 465 THR A 583 REMARK 465 GLN A 584 REMARK 465 ALA A 585 REMARK 465 ASP A 586 REMARK 465 LEU A 587 REMARK 465 LYS A 588 REMARK 465 SER A 589 REMARK 465 SER A 590 REMARK 465 THR A 591 REMARK 465 PHE A 592 REMARK 465 LEU A 593 REMARK 465 GLU A 594 REMARK 465 HIS A 595 REMARK 465 HIS A 596 REMARK 465 HIS A 597 REMARK 465 HIS A 598 REMARK 465 HIS A 599 REMARK 465 HIS A 600 REMARK 465 LYS B 411 REMARK 465 LYS B 412 REMARK 465 GLN B 413 REMARK 465 THR B 414 REMARK 465 GLN B 415 REMARK 465 ARG B 416 REMARK 465 LYS B 448 REMARK 465 ILE B 449 REMARK 465 ARG B 450 REMARK 465 GLU B 451 REMARK 465 ASP B 452 REMARK 465 HIS B 453 REMARK 465 LYS B 454 REMARK 465 TYR B 579 REMARK 465 PRO B 580 REMARK 465 HIS B 581 REMARK 465 VAL B 582 REMARK 465 THR B 583 REMARK 465 GLN B 584 REMARK 465 ALA B 585 REMARK 465 ASP B 586 REMARK 465 LEU B 587 REMARK 465 LYS B 588 REMARK 465 SER B 589 REMARK 465 SER B 590 REMARK 465 THR B 591 REMARK 465 PHE B 592 REMARK 465 LEU B 593 REMARK 465 GLU B 594 REMARK 465 HIS B 595 REMARK 465 HIS B 596 REMARK 465 HIS B 597 REMARK 465 HIS B 598 REMARK 465 HIS B 599 REMARK 465 HIS B 600 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE B 520 O HOH B 801 1.80 REMARK 500 O HOH B 803 O HOH B 894 1.86 REMARK 500 N ASN A 417 O HOH A 801 1.90 REMARK 500 O HOH A 892 O HOH A 905 1.94 REMARK 500 O HOH B 923 O HOH B 927 1.96 REMARK 500 NE2 GLN A 467 O HOH A 802 2.06 REMARK 500 OH TYR B 465 O HOH B 802 2.06 REMARK 500 NH2 ARG B 547 O HOH B 803 2.10 REMARK 500 OE1 GLU B 537 O HOH B 804 2.11 REMARK 500 O HOH A 913 O HOH A 931 2.11 REMARK 500 O MET B 578 O HOH B 805 2.16 REMARK 500 O HOH A 902 O HOH A 931 2.16 REMARK 500 O HOH A 905 O HOH A 945 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 811 O HOH B 820 3755 1.95 REMARK 500 O HOH B 864 O HOH B 876 7645 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 456 42.75 -101.88 REMARK 500 HIS B 514 -30.53 -135.44 REMARK 500 ASP B 517 71.67 -113.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KSO RELATED DB: PDB REMARK 900 RELATED ID: 5KSY RELATED DB: PDB REMARK 900 RELATED ID: 5KSZ RELATED DB: PDB REMARK 900 RELATED ID: 5KTY RELATED DB: PDB REMARK 900 RELATED ID: 5KU1 RELATED DB: PDB REMARK 900 RELATED ID: 5KUT RELATED DB: PDB DBREF 5KSP A 411 592 UNP Q8IXI2 MIRO1_HUMAN 411 592 DBREF 5KSP B 411 592 UNP Q8IXI2 MIRO1_HUMAN 411 592 SEQADV 5KSP LEU A 593 UNP Q8IXI2 EXPRESSION TAG SEQADV 5KSP GLU A 594 UNP Q8IXI2 EXPRESSION TAG SEQADV 5KSP HIS A 595 UNP Q8IXI2 EXPRESSION TAG SEQADV 5KSP HIS A 596 UNP Q8IXI2 EXPRESSION TAG SEQADV 5KSP HIS A 597 UNP Q8IXI2 EXPRESSION TAG SEQADV 5KSP HIS A 598 UNP Q8IXI2 EXPRESSION TAG SEQADV 5KSP HIS A 599 UNP Q8IXI2 EXPRESSION TAG SEQADV 5KSP HIS A 600 UNP Q8IXI2 EXPRESSION TAG SEQADV 5KSP LEU B 593 UNP Q8IXI2 EXPRESSION TAG SEQADV 5KSP GLU B 594 UNP Q8IXI2 EXPRESSION TAG SEQADV 5KSP HIS B 595 UNP Q8IXI2 EXPRESSION TAG SEQADV 5KSP HIS B 596 UNP Q8IXI2 EXPRESSION TAG SEQADV 5KSP HIS B 597 UNP Q8IXI2 EXPRESSION TAG SEQADV 5KSP HIS B 598 UNP Q8IXI2 EXPRESSION TAG SEQADV 5KSP HIS B 599 UNP Q8IXI2 EXPRESSION TAG SEQADV 5KSP HIS B 600 UNP Q8IXI2 EXPRESSION TAG SEQRES 1 A 190 LYS LYS GLN THR GLN ARG ASN VAL PHE ARG CYS ASN VAL SEQRES 2 A 190 ILE GLY VAL LYS ASN CYS GLY LYS SER GLY VAL LEU GLN SEQRES 3 A 190 ALA LEU LEU GLY ARG ASN LEU MET ARG GLN LYS LYS ILE SEQRES 4 A 190 ARG GLU ASP HIS LYS SER TYR TYR ALA ILE ASN THR VAL SEQRES 5 A 190 TYR VAL TYR GLY GLN GLU LYS TYR LEU LEU LEU HIS ASP SEQRES 6 A 190 ILE SER GLU SER GLU PHE LEU THR GLU ALA GLU ILE ILE SEQRES 7 A 190 CYS ASP VAL VAL CYS LEU VAL TYR ASP VAL SER ASN PRO SEQRES 8 A 190 LYS SER PHE GLU TYR CYS ALA ARG ILE PHE LYS GLN HIS SEQRES 9 A 190 PHE MET ASP SER ARG ILE PRO CYS LEU ILE VAL ALA ALA SEQRES 10 A 190 LYS SER ASP LEU HIS GLU VAL LYS GLN GLU TYR SER ILE SEQRES 11 A 190 SER PRO THR ASP PHE CYS ARG LYS HIS LYS MET PRO PRO SEQRES 12 A 190 PRO GLN ALA PHE THR CYS ASN THR ALA ASP ALA PRO SER SEQRES 13 A 190 LYS ASP ILE PHE VAL LYS LEU THR THR MET ALA MET TYR SEQRES 14 A 190 PRO HIS VAL THR GLN ALA ASP LEU LYS SER SER THR PHE SEQRES 15 A 190 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 190 LYS LYS GLN THR GLN ARG ASN VAL PHE ARG CYS ASN VAL SEQRES 2 B 190 ILE GLY VAL LYS ASN CYS GLY LYS SER GLY VAL LEU GLN SEQRES 3 B 190 ALA LEU LEU GLY ARG ASN LEU MET ARG GLN LYS LYS ILE SEQRES 4 B 190 ARG GLU ASP HIS LYS SER TYR TYR ALA ILE ASN THR VAL SEQRES 5 B 190 TYR VAL TYR GLY GLN GLU LYS TYR LEU LEU LEU HIS ASP SEQRES 6 B 190 ILE SER GLU SER GLU PHE LEU THR GLU ALA GLU ILE ILE SEQRES 7 B 190 CYS ASP VAL VAL CYS LEU VAL TYR ASP VAL SER ASN PRO SEQRES 8 B 190 LYS SER PHE GLU TYR CYS ALA ARG ILE PHE LYS GLN HIS SEQRES 9 B 190 PHE MET ASP SER ARG ILE PRO CYS LEU ILE VAL ALA ALA SEQRES 10 B 190 LYS SER ASP LEU HIS GLU VAL LYS GLN GLU TYR SER ILE SEQRES 11 B 190 SER PRO THR ASP PHE CYS ARG LYS HIS LYS MET PRO PRO SEQRES 12 B 190 PRO GLN ALA PHE THR CYS ASN THR ALA ASP ALA PRO SER SEQRES 13 B 190 LYS ASP ILE PHE VAL LYS LEU THR THR MET ALA MET TYR SEQRES 14 B 190 PRO HIS VAL THR GLN ALA ASP LEU LYS SER SER THR PHE SEQRES 15 B 190 LEU GLU HIS HIS HIS HIS HIS HIS HET GDP A 701 28 HET CL A 702 1 HET GDP B 701 28 HET CL B 702 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM CL CHLORIDE ION FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 CL 2(CL 1-) FORMUL 7 HOH *292(H2 O) HELIX 1 AA1 GLY A 430 LEU A 439 1 10 HELIX 2 AA2 ASN A 442 LYS A 447 1 6 HELIX 3 AA3 THR A 483 ILE A 488 1 6 HELIX 4 AA4 SER A 503 PHE A 515 1 13 HELIX 5 AA5 SER A 541 HIS A 549 1 9 HELIX 6 AA6 LYS A 567 MET A 578 1 12 HELIX 7 AA7 GLY B 430 LEU B 439 1 10 HELIX 8 AA8 THR B 483 ILE B 488 1 6 HELIX 9 AA9 SER B 503 PHE B 515 1 13 HELIX 10 AB1 SER B 541 HIS B 549 1 9 HELIX 11 AB2 LYS B 567 MET B 578 1 12 SHEET 1 AA1 6 TYR A 457 VAL A 464 0 SHEET 2 AA1 6 GLN A 467 ILE A 476 -1 O LEU A 473 N ALA A 458 SHEET 3 AA1 6 VAL A 418 ILE A 424 1 N PHE A 419 O LEU A 472 SHEET 4 AA1 6 VAL A 491 ASP A 497 1 O VAL A 495 N ILE A 424 SHEET 5 AA1 6 CYS A 522 ALA A 527 1 O VAL A 525 N LEU A 494 SHEET 6 AA1 6 GLN A 555 ALA A 556 1 O GLN A 555 N ILE A 524 SHEET 1 AA2 6 TYR B 457 VAL B 464 0 SHEET 2 AA2 6 GLN B 467 ILE B 476 -1 O LEU B 473 N ALA B 458 SHEET 3 AA2 6 VAL B 418 ILE B 424 1 N CYS B 421 O LEU B 472 SHEET 4 AA2 6 VAL B 491 ASP B 497 1 O VAL B 495 N ILE B 424 SHEET 5 AA2 6 CYS B 522 ALA B 527 1 O VAL B 525 N LEU B 494 SHEET 6 AA2 6 GLN B 555 ALA B 556 1 O GLN B 555 N ILE B 524 SITE 1 AC1 22 VAL A 426 ASN A 428 CYS A 429 GLY A 430 SITE 2 AC1 22 LYS A 431 SER A 432 GLY A 433 LEU A 443 SITE 3 AC1 22 LYS A 447 LYS A 528 ASP A 530 LEU A 531 SITE 4 AC1 22 THR A 558 CYS A 559 ASN A 560 HOH A 805 SITE 5 AC1 22 HOH A 823 HOH A 829 HOH A 834 HOH A 861 SITE 6 AC1 22 HOH A 874 HOH A 895 SITE 1 AC2 5 LYS A 427 LYS A 431 SER A 477 GLU A 478 SITE 2 AC2 5 HOH A 805 SITE 1 AC3 20 VAL B 426 ASN B 428 CYS B 429 GLY B 430 SITE 2 AC3 20 LYS B 431 SER B 432 GLY B 433 LEU B 443 SITE 3 AC3 20 LYS B 447 LYS B 528 ASP B 530 LEU B 531 SITE 4 AC3 20 THR B 558 CYS B 559 ASN B 560 HOH B 829 SITE 5 AC3 20 HOH B 830 HOH B 840 HOH B 848 HOH B 853 SITE 1 AC4 4 LYS B 427 LYS B 431 SER B 477 GLU B 478 CRYST1 66.070 72.640 151.760 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015135 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013767 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006589 0.00000