HEADER HYDROLASE 09-JUL-16 5KSS TITLE STATIONARY PHASE SURVIVAL PROTEIN E (SURE) FROM XYLELLA FASTIDIOSA - TITLE 2 XFSURE-DS (DIMER SMALLER) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-NUCLEOTIDASE SURE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NUCLEOSIDE 5'-MONOPHOSPHATE PHOSPHOHYDROLASE; COMPND 5 EC: 3.1.3.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XYLELLA FASTIDIOSA (STRAIN 9A5C); SOURCE 3 ORGANISM_TAXID: 160492; SOURCE 4 STRAIN: 9A5C; SOURCE 5 GENE: SURE, XF_0858; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STATIONARY PHASE SURVIVAL PROTEIN E (SURE), XYLELLA FASTIDIOSA, KEYWDS 2 CRYSTALLIZATION., HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.T.P.MACHADO,E.M.B.FONSECA,M.A.DOS REIS,A.M.SARAIVA,C.A.DOS SANTOS, AUTHOR 2 A.M.S.DE TOLEDO,I.POLIKARPOV,A.P.DE SOUZA,R.APARICIO,J.IULEK REVDAT 4 04-OCT-23 5KSS 1 REMARK REVDAT 3 20-SEP-17 5KSS 1 JRNL REVDAT 2 02-AUG-17 5KSS 1 JRNL REVDAT 1 19-JUL-17 5KSS 0 JRNL AUTH A.T.P.MACHADO,E.M.B.FONSECA,M.A.D.REIS,A.M.SARAIVA, JRNL AUTH 2 C.A.D.SANTOS,M.A.S.DE TOLEDO,I.POLIKARPOV,A.P.DE SOUZA, JRNL AUTH 3 R.APARICIO,J.IULEK JRNL TITL CONFORMATIONAL VARIABILITY OF THE STATIONARY PHASE SURVIVAL JRNL TITL 2 PROTEIN E FROM XYLELLA FASTIDIOSA REVEALED BY X-RAY JRNL TITL 3 CRYSTALLOGRAPHY, SMALL-ANGLE X-RAY SCATTERING STUDIES, AND JRNL TITL 4 NORMAL MODE ANALYSIS. JRNL REF PROTEINS V. 85 1931 2017 JRNL REFN ESSN 1097-0134 JRNL PMID 28677327 JRNL DOI 10.1002/PROT.25347 REMARK 2 REMARK 2 RESOLUTION. 2.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 82.4 REMARK 3 NUMBER OF REFLECTIONS : 9796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.275 REMARK 3 R VALUE (WORKING SET) : 0.272 REMARK 3 FREE R VALUE : 0.329 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9489 - 4.0667 1.00 3793 199 0.2379 0.2860 REMARK 3 2 4.0667 - 3.2282 0.50 1895 95 0.3310 0.4143 REMARK 3 3 3.2282 - 2.8202 0.97 3620 194 0.3142 0.3789 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.540 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3874 REMARK 3 ANGLE : 0.519 5304 REMARK 3 CHIRALITY : 0.034 632 REMARK 3 PLANARITY : 0.003 697 REMARK 3 DIHEDRAL : 8.286 1392 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:255 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.4035 31.6500 18.8674 REMARK 3 T TENSOR REMARK 3 T11: 0.5305 T22: 0.4890 REMARK 3 T33: 0.5659 T12: 0.0040 REMARK 3 T13: 0.0479 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 2.2382 L22: 2.4828 REMARK 3 L33: 3.8970 L12: -1.1804 REMARK 3 L13: -0.6242 L23: 0.0525 REMARK 3 S TENSOR REMARK 3 S11: 0.2208 S12: -0.0567 S13: 0.3114 REMARK 3 S21: 0.0089 S22: 0.1320 S23: -0.1576 REMARK 3 S31: -0.6462 S32: -0.0235 S33: -0.3608 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND RESID 1:257 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.5854 10.6819 18.1917 REMARK 3 T TENSOR REMARK 3 T11: 0.5849 T22: 0.6461 REMARK 3 T33: 0.7686 T12: -0.1224 REMARK 3 T13: 0.0237 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.5548 L22: 2.7083 REMARK 3 L33: 3.7828 L12: -0.5616 REMARK 3 L13: -1.2955 L23: -0.1309 REMARK 3 S TENSOR REMARK 3 S11: -0.2850 S12: 0.0963 S13: -0.3840 REMARK 3 S21: -0.3048 S22: 0.2235 S23: 0.6097 REMARK 3 S31: 0.4703 S32: -0.3080 S33: 0.0728 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND ( ( RESSEQ 4:36 AND NOT ( ( REMARK 3 RESID 30 OR RESID 24 ) AND SIDECHAIN ) ) REMARK 3 OR ( RESSEQ 39:56 AND NOT ( RESID 40 AND REMARK 3 SIDECHAIN ) ) OR ( RESSEQ 65:127 AND NOT REMARK 3 ( ( RESID 81 OR RESID 83 OR RESID 102 OR REMARK 3 RESID 85 OR RESID 112 ) AND SIDECHAIN ) ) REMARK 3 OR ( RESSEQ 138:153 AND NOT ( RESID 149 REMARK 3 AND SIDECHAIN ) ) OR ( RESSEQ 159:160 AND REMARK 3 NOT ( RESSEQ 159:160 AND SIDECHAIN ) ) OR REMARK 3 ( RESSEQ 163:172 AND NOT ( RESID 171 AND REMARK 3 SIDECHAIN ) ) OR ( RESSEQ 193:198 AND NOT REMARK 3 ( RESID 195 AND SIDECHAIN ) ) OR ( RESSEQ REMARK 3 202:208 ) OR ( RESSEQ 227:244 AND NOT ( ( REMARK 3 RESID 236 OR RESID 238 OR RESID 240 ) AND REMARK 3 SIDECHAIN ) ) OR ( RESSEQ 247:252 AND NOT REMARK 3 ( RESID 249 AND SIDECHAIN ) ) ) REMARK 3 SELECTION : CHAIN B AND ( ( RESSEQ 4:36 AND NOT ( ( REMARK 3 RESID 30 OR RESID 24 ) AND SIDECHAIN ) ) REMARK 3 OR ( RESSEQ 39:56 AND NOT ( RESID 40 AND REMARK 3 SIDECHAIN ) ) OR ( RESSEQ 65:127 AND NOT REMARK 3 ( ( RESID 81 OR RESID 83 OR RESID 102 OR REMARK 3 RESID 85 OR RESID 112 ) AND SIDECHAIN ) ) REMARK 3 OR ( RESSEQ 138:153 AND NOT ( RESID 149 REMARK 3 AND SIDECHAIN ) ) OR ( RESSEQ 159:160 AND REMARK 3 NOT ( RESSEQ 159:160 AND SIDECHAIN ) ) OR REMARK 3 ( RESSEQ 163:172 AND NOT ( RESID 171 AND REMARK 3 SIDECHAIN ) ) OR ( RESSEQ 193:198 AND NOT REMARK 3 ( RESID 195 AND SIDECHAIN ) ) OR ( RESSEQ REMARK 3 202:208 ) OR ( RESSEQ 227:244 AND NOT ( ( REMARK 3 RESID 236 OR RESID 238 OR RESID 240 ) AND REMARK 3 SIDECHAIN ) ) OR ( RESSEQ 247:252 AND NOT REMARK 3 ( RESID 249 AND SIDECHAIN ) ) ) REMARK 3 ATOM PAIRS NUMBER : 1264 REMARK 3 RMSD : 0.006 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KSS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000209296. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.437 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9802 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.820 REMARK 200 RESOLUTION RANGE LOW (A) : 43.944 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.5 REMARK 200 DATA REDUNDANCY : 3.730 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.77 REMARK 200 R MERGE FOR SHELL (I) : 0.50400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: 3TY2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PROPANE PH 7.6, 0.13 M REMARK 280 SODIUM IODIDE, 16% (W/V) PEG 3350, 5 MM DITHIOTHEITOL AND 0.5 REMARK 280 MANGANESE II CHLORIDE., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.47050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.05900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.47050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.05900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -186.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 80.07455 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 71.18058 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 605 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 130 REMARK 465 GLU A 131 REMARK 465 GLY A 132 REMARK 465 ALA A 256 REMARK 465 HIS A 257 REMARK 465 MET A 258 REMARK 465 ASP A 259 REMARK 465 TRP A 260 REMARK 465 PRO A 261 REMARK 465 THR A 262 REMARK 465 LEU A 263 REMARK 465 GLU A 264 REMARK 465 HIS A 265 REMARK 465 HIS A 266 REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 TYR B 129 REMARK 465 ARG B 130 REMARK 465 GLU B 131 REMARK 465 GLY B 132 REMARK 465 GLN B 133 REMARK 465 GLN B 134 REMARK 465 GLY B 210 REMARK 465 PRO B 211 REMARK 465 MET B 258 REMARK 465 ASP B 259 REMARK 465 TRP B 260 REMARK 465 PRO B 261 REMARK 465 THR B 262 REMARK 465 LEU B 263 REMARK 465 GLU B 264 REMARK 465 HIS B 265 REMARK 465 HIS B 266 REMARK 465 HIS B 267 REMARK 465 HIS B 268 REMARK 465 HIS B 269 REMARK 465 HIS B 270 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 1 CG SD CE REMARK 480 LYS A 17 CD CE NZ REMARK 480 MET A 31 CG SD CE REMARK 480 LYS A 55 CG CD CE NZ REMARK 480 MET A 59 CG SD CE REMARK 480 TYR A 82 CD1 CD2 CE1 CE2 CZ OH REMARK 480 ASP A 85 CG OD1 OD2 REMARK 480 ASP A 100 CG OD1 OD2 REMARK 480 LEU A 116 CG CD1 CD2 REMARK 480 LEU A 128 CD1 CD2 REMARK 480 TYR A 129 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 GLN A 133 CG CD OE1 NE2 REMARK 480 GLN A 134 CG CD OE1 NE2 REMARK 480 LYS A 153 CG CD CE NZ REMARK 480 GLN A 174 CG CD OE1 NE2 REMARK 480 LYS A 179 CG CD CE NZ REMARK 480 ARG A 188 CD NE CZ NH1 NH2 REMARK 480 ARG A 199 CG CD NE CZ NH1 NH2 REMARK 480 HIS A 201 ND1 CD2 CE1 NE2 REMARK 480 ARG A 225 CD NE CZ NH1 NH2 REMARK 480 GLN A 242 CG CD OE1 NE2 REMARK 480 LEU A 244 CG CD1 CD2 REMARK 480 GLU A 245 CG CD REMARK 480 ASN A 246 OD1 ND2 REMARK 480 ARG A 253 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 17 CE NZ REMARK 480 GLU B 29 CG CD OE1 OE2 REMARK 480 MET B 31 CG SD CE REMARK 480 ARG B 39 NE CZ NH1 NH2 REMARK 480 LYS B 55 CG CD CE NZ REMARK 480 MET B 59 SD CE REMARK 480 ARG B 114 CG CD NE CZ NH1 NH2 REMARK 480 GLN B 137 CG CD OE1 NE2 REMARK 480 GLU B 139 CG CD OE1 OE2 REMARK 480 GLN B 151 CG CD OE1 NE2 REMARK 480 LYS B 153 CG CD CE NZ REMARK 480 ASP B 155 CG OD1 OD2 REMARK 480 LEU B 157 CG CD1 CD2 REMARK 480 GLN B 173 CG CD OE1 NE2 REMARK 480 ARG B 176 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 179 CD CE NZ REMARK 480 ARG B 186 CG CD NE CZ NH1 NH2 REMARK 480 HIS B 187 CG ND1 CD2 CE1 NE2 REMARK 480 ARG B 188 CD NE CZ NH1 NH2 REMARK 480 ARG B 225 CG CD NE CZ NH1 NH2 REMARK 480 GLN B 242 CD OE1 NE2 REMARK 480 ARG B 253 CG CD NE CZ NH1 NH2 REMARK 480 HIS B 257 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 31 104.84 -162.76 REMARK 500 ASN A 81 50.87 -90.71 REMARK 500 LEU A 128 -162.83 -125.04 REMARK 500 GLN A 137 58.48 -105.43 REMARK 500 THR A 154 -77.39 -64.60 REMARK 500 ASP A 160 -5.20 -151.97 REMARK 500 HIS A 187 66.11 -105.35 REMARK 500 ALA A 215 19.11 -142.35 REMARK 500 MET B 31 104.74 -163.11 REMARK 500 ASP B 160 -7.06 -152.78 REMARK 500 ASN B 185 83.69 -155.50 REMARK 500 HIS B 187 53.96 -95.88 REMARK 500 ALA B 215 24.26 -144.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 9 OD1 REMARK 620 2 ASN A 92 OD1 83.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 9 OD1 REMARK 620 2 ASN B 92 OD1 83.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KST RELATED DB: PDB REMARK 900 RELATED ID: 5KSQ RELATED DB: PDB REMARK 900 RELATED ID: 5KSR RELATED DB: PDB DBREF 5KSS A 1 262 UNP Q9PF20 SURE_XYLFA 1 262 DBREF 5KSS B 1 262 UNP Q9PF20 SURE_XYLFA 1 262 SEQADV 5KSS LEU A 263 UNP Q9PF20 EXPRESSION TAG SEQADV 5KSS GLU A 264 UNP Q9PF20 EXPRESSION TAG SEQADV 5KSS HIS A 265 UNP Q9PF20 EXPRESSION TAG SEQADV 5KSS HIS A 266 UNP Q9PF20 EXPRESSION TAG SEQADV 5KSS HIS A 267 UNP Q9PF20 EXPRESSION TAG SEQADV 5KSS HIS A 268 UNP Q9PF20 EXPRESSION TAG SEQADV 5KSS HIS A 269 UNP Q9PF20 EXPRESSION TAG SEQADV 5KSS HIS A 270 UNP Q9PF20 EXPRESSION TAG SEQADV 5KSS LEU B 263 UNP Q9PF20 EXPRESSION TAG SEQADV 5KSS GLU B 264 UNP Q9PF20 EXPRESSION TAG SEQADV 5KSS HIS B 265 UNP Q9PF20 EXPRESSION TAG SEQADV 5KSS HIS B 266 UNP Q9PF20 EXPRESSION TAG SEQADV 5KSS HIS B 267 UNP Q9PF20 EXPRESSION TAG SEQADV 5KSS HIS B 268 UNP Q9PF20 EXPRESSION TAG SEQADV 5KSS HIS B 269 UNP Q9PF20 EXPRESSION TAG SEQADV 5KSS HIS B 270 UNP Q9PF20 EXPRESSION TAG SEQRES 1 A 270 MET ARG VAL LEU VAL SER ASN ASP ASP GLY VAL ASP ALA SEQRES 2 A 270 PRO GLY ILE LYS ILE LEU ALA ASP ALA LEU ARG ASN ALA SEQRES 3 A 270 GLY HIS GLU VAL MET VAL VAL ALA PRO ASP ARG ASP ARG SEQRES 4 A 270 SER GLY ALA SER ASN SER LEU THR LEU ASP THR PRO ILE SEQRES 5 A 270 ARG ALA LYS GLN ILE ASP MET HIS THR TYR SER VAL ALA SEQRES 6 A 270 GLY THR PRO THR ASP CYS VAL HIS LEU ALA LEU THR GLY SEQRES 7 A 270 LEU LEU ASN TYR ASP PRO ASP ILE VAL VAL SER GLY ILE SEQRES 8 A 270 ASN ASN THR GLY ASN LEU GLY ASP ASP VAL ILE TYR SER SEQRES 9 A 270 GLY THR VAL SER ALA ALA MET GLU GLY ARG PHE LEU GLY SEQRES 10 A 270 LEU PRO ALA VAL ALA VAL SER LEU VAL THR LEU TYR ARG SEQRES 11 A 270 GLU GLY GLN GLN ALA PRO GLN TYR GLU THR ALA ALA HIS SEQRES 12 A 270 ALA ALA ILE ASN ILE VAL ALA GLN LEU LYS THR ASP PRO SEQRES 13 A 270 LEU PRO ALA ASP THR ILE LEU ASN VAL ASN VAL PRO ASP SEQRES 14 A 270 VAL THR TRP GLN GLN MET ARG GLY PHE LYS VAL THR ARG SEQRES 15 A 270 LEU GLY ASN ARG HIS ARG SER ALA PRO CYS LEU THR GLN SEQRES 16 A 270 THR ASP PRO ARG GLY HIS THR ILE TYR TRP ILE GLY PRO SEQRES 17 A 270 ALA GLY PRO GLU GLN ASP ALA GLY PRO GLY THR ASP PHE SEQRES 18 A 270 ASP ALA VAL ARG ASN THR TYR ILE SER ILE THR PRO ILE SEQRES 19 A 270 HIS VAL ASP LEU THR ARG TYR GLN ALA LEU GLU ASN VAL SEQRES 20 A 270 THR ARG TRP THR ASP ARG LEU THR ALA HIS MET ASP TRP SEQRES 21 A 270 PRO THR LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 270 MET ARG VAL LEU VAL SER ASN ASP ASP GLY VAL ASP ALA SEQRES 2 B 270 PRO GLY ILE LYS ILE LEU ALA ASP ALA LEU ARG ASN ALA SEQRES 3 B 270 GLY HIS GLU VAL MET VAL VAL ALA PRO ASP ARG ASP ARG SEQRES 4 B 270 SER GLY ALA SER ASN SER LEU THR LEU ASP THR PRO ILE SEQRES 5 B 270 ARG ALA LYS GLN ILE ASP MET HIS THR TYR SER VAL ALA SEQRES 6 B 270 GLY THR PRO THR ASP CYS VAL HIS LEU ALA LEU THR GLY SEQRES 7 B 270 LEU LEU ASN TYR ASP PRO ASP ILE VAL VAL SER GLY ILE SEQRES 8 B 270 ASN ASN THR GLY ASN LEU GLY ASP ASP VAL ILE TYR SER SEQRES 9 B 270 GLY THR VAL SER ALA ALA MET GLU GLY ARG PHE LEU GLY SEQRES 10 B 270 LEU PRO ALA VAL ALA VAL SER LEU VAL THR LEU TYR ARG SEQRES 11 B 270 GLU GLY GLN GLN ALA PRO GLN TYR GLU THR ALA ALA HIS SEQRES 12 B 270 ALA ALA ILE ASN ILE VAL ALA GLN LEU LYS THR ASP PRO SEQRES 13 B 270 LEU PRO ALA ASP THR ILE LEU ASN VAL ASN VAL PRO ASP SEQRES 14 B 270 VAL THR TRP GLN GLN MET ARG GLY PHE LYS VAL THR ARG SEQRES 15 B 270 LEU GLY ASN ARG HIS ARG SER ALA PRO CYS LEU THR GLN SEQRES 16 B 270 THR ASP PRO ARG GLY HIS THR ILE TYR TRP ILE GLY PRO SEQRES 17 B 270 ALA GLY PRO GLU GLN ASP ALA GLY PRO GLY THR ASP PHE SEQRES 18 B 270 ASP ALA VAL ARG ASN THR TYR ILE SER ILE THR PRO ILE SEQRES 19 B 270 HIS VAL ASP LEU THR ARG TYR GLN ALA LEU GLU ASN VAL SEQRES 20 B 270 THR ARG TRP THR ASP ARG LEU THR ALA HIS MET ASP TRP SEQRES 21 B 270 PRO THR LEU GLU HIS HIS HIS HIS HIS HIS HET MN A 501 1 HET IOD A 502 1 HET IOD A 503 1 HET CL A 504 1 HET IOD A 505 1 HET MN B 501 1 HET CL B 502 1 HETNAM MN MANGANESE (II) ION HETNAM IOD IODIDE ION HETNAM CL CHLORIDE ION FORMUL 3 MN 2(MN 2+) FORMUL 4 IOD 3(I 1-) FORMUL 6 CL 2(CL 1-) FORMUL 10 HOH *18(H2 O) HELIX 1 AA1 ALA A 13 ALA A 26 1 14 HELIX 2 AA2 THR A 67 LEU A 76 1 10 HELIX 3 AA3 LEU A 97 VAL A 101 5 5 HELIX 4 AA4 SER A 104 LEU A 116 1 13 HELIX 5 AA5 GLN A 137 ASP A 155 1 19 HELIX 6 AA6 THR A 219 ASN A 226 1 8 HELIX 7 AA7 ALA A 243 ARG A 253 1 11 HELIX 8 AA8 ALA B 13 ALA B 26 1 14 HELIX 9 AA9 THR B 67 LEU B 76 1 10 HELIX 10 AB1 LEU B 97 VAL B 101 5 5 HELIX 11 AB2 SER B 104 LEU B 116 1 13 HELIX 12 AB3 GLN B 137 ASP B 155 1 19 HELIX 13 AB4 THR B 171 MET B 175 5 5 HELIX 14 AB5 THR B 219 ASN B 226 1 8 HELIX 15 AB6 ALA B 243 HIS B 257 1 15 SHEET 1 AA1 6 VAL A 3 SER A 6 0 SHEET 2 AA1 6 ILE A 86 ASN A 92 1 O GLY A 90 N SER A 6 SHEET 3 AA1 6 ALA A 120 VAL A 126 1 O VAL A 121 N SER A 89 SHEET 4 AA1 6 THR A 161 PRO A 168 1 O VAL A 167 N SER A 124 SHEET 5 AA1 6 TYR A 228 HIS A 235 -1 O THR A 232 N ASN A 164 SHEET 6 AA1 6 GLY A 177 VAL A 180 1 N GLY A 177 O ILE A 229 SHEET 1 AA2 5 VAL A 32 PRO A 35 0 SHEET 2 AA2 5 THR A 61 VAL A 64 1 O TYR A 62 N VAL A 32 SHEET 3 AA2 5 ILE A 52 ASP A 58 -1 N LYS A 55 O SER A 63 SHEET 4 AA2 5 THR B 202 TRP B 205 -1 O TYR B 204 N ILE A 52 SHEET 5 AA2 5 LEU B 193 THR B 196 -1 N LEU B 193 O TRP B 205 SHEET 1 AA311 LEU A 193 THR A 196 0 SHEET 2 AA311 THR A 202 TRP A 205 -1 O TRP A 205 N LEU A 193 SHEET 3 AA311 ILE B 52 ASP B 58 -1 O ILE B 52 N TYR A 204 SHEET 4 AA311 THR B 61 VAL B 64 -1 O SER B 63 N LYS B 55 SHEET 5 AA311 GLU B 29 PRO B 35 1 N ALA B 34 O VAL B 64 SHEET 6 AA311 ARG B 2 SER B 6 1 N VAL B 5 O MET B 31 SHEET 7 AA311 ILE B 86 ASN B 92 1 O GLY B 90 N SER B 6 SHEET 8 AA311 ALA B 120 VAL B 126 1 O VAL B 121 N SER B 89 SHEET 9 AA311 THR B 161 PRO B 168 1 O VAL B 167 N SER B 124 SHEET 10 AA311 ILE B 229 HIS B 235 -1 O THR B 232 N ASN B 164 SHEET 11 AA311 PHE B 178 VAL B 180 1 N LYS B 179 O ILE B 231 LINK OD1 ASP A 9 MN MN A 501 1555 1555 2.21 LINK OD1 ASN A 92 MN MN A 501 1555 1555 2.08 LINK OD1 ASP B 9 MN MN B 501 1555 1555 2.23 LINK OD1 ASN B 92 MN MN B 501 1555 1555 2.11 CISPEP 1 GLY A 90 ILE A 91 0 -2.39 CISPEP 2 GLY B 90 ILE B 91 0 -2.28 SITE 1 AC1 6 ASP A 8 ASP A 9 SER A 40 ASN A 92 SITE 2 AC1 6 ASN A 93 CL A 504 SITE 1 AC2 1 ASN A 44 SITE 1 AC3 2 TYR A 241 HIS B 235 SITE 1 AC4 4 ASP A 8 ASN A 92 ASN A 96 MN A 501 SITE 1 AC5 2 HIS A 235 TYR B 241 SITE 1 AC6 6 ASP B 8 ASP B 9 SER B 40 ASN B 92 SITE 2 AC6 6 ASN B 93 CL B 502 SITE 1 AC7 6 ASP B 8 ASN B 92 ASN B 96 SER B 104 SITE 2 AC7 6 THR B 106 MN B 501 CRYST1 86.941 80.118 71.511 90.00 95.51 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011502 0.000000 0.001109 0.00000 SCALE2 0.000000 0.012482 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014049 0.00000