HEADER VIRAL PROTEIN/IMMUNE SYSTEM 14-JUL-16 5KVF TITLE ZIKA SPECIFIC ANTIBODY, ZV-64, BOUND TO ZIKA ENVELOPE DIII COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZIKA ENVELOPE DIII; COMPND 3 CHAIN: E; COMPND 4 FRAGMENT: UNP RESIDUES 589-697; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ZV-64 ANTIBODY FAB LIGHT CHAIN; COMPND 8 CHAIN: L; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ZV-64 ANTIBODY FAB HEAVY CHAIN; COMPND 11 CHAIN: H SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 3 ORGANISM_COMMON: ZIKV; SOURCE 4 ORGANISM_TAXID: 64320; SOURCE 5 STRAIN: FRENCH POLYNESIA H/PF/2013; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A(+); SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 STRAIN: C57BL/6, IRF3 KNOCKOUT; SOURCE 15 OTHER_DETAILS: HYBRIDOMA MONOCLONAL ANTIBODY; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 18 ORGANISM_TAXID: 10090; SOURCE 19 STRAIN: C57BL/6, IRF3 KNOCKOUT; SOURCE 20 OTHER_DETAILS: HYBRIDOMA MONOCLONAL ANTIBODY KEYWDS ZIKA VIRUS, ENVELOPE PROTEIN, VIRAL PROTEIN, STRUCTURAL GENOMICS, KEYWDS 2 ANTIBODY, CSGID, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 3 DISEASES, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHAO,C.A.NELSON,D.H.FREMONT,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 2 INFECTIOUS DISEASES (CSGID) REVDAT 3 24-AUG-16 5KVF 1 JRNL REVDAT 2 10-AUG-16 5KVF 1 JRNL REVDAT 1 03-AUG-16 5KVF 0 JRNL AUTH H.ZHAO,E.FERNANDEZ,K.A.DOWD,S.D.SPEER,D.J.PLATT,M.J.GORMAN, JRNL AUTH 2 J.GOVERO,C.A.NELSON,T.C.PIERSON,M.S.DIAMOND,D.H.FREMONT JRNL TITL STRUCTURAL BASIS OF ZIKA VIRUS-SPECIFIC ANTIBODY PROTECTION. JRNL REF CELL V. 166 1016 2016 JRNL REFN ISSN 1097-4172 JRNL PMID 27475895 JRNL DOI 10.1016/J.CELL.2016.07.020 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 104915 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 5325 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7450 - 4.3353 1.00 3522 219 0.1668 0.1604 REMARK 3 2 4.3353 - 3.4470 1.00 3436 173 0.1372 0.1613 REMARK 3 3 3.4470 - 3.0130 1.00 3427 145 0.1457 0.1607 REMARK 3 4 3.0130 - 2.7383 1.00 3365 167 0.1451 0.1506 REMARK 3 5 2.7383 - 2.5425 1.00 3367 192 0.1541 0.1902 REMARK 3 6 2.5425 - 2.3928 1.00 3314 186 0.1485 0.1809 REMARK 3 7 2.3928 - 2.2732 1.00 3336 199 0.1445 0.1888 REMARK 3 8 2.2732 - 2.1744 1.00 3342 172 0.1343 0.1806 REMARK 3 9 2.1744 - 2.0908 1.00 3322 156 0.1333 0.1439 REMARK 3 10 2.0908 - 2.0187 1.00 3329 157 0.1324 0.1583 REMARK 3 11 2.0187 - 1.9556 1.00 3315 191 0.1366 0.1921 REMARK 3 12 1.9556 - 1.8998 1.00 3343 152 0.1373 0.1901 REMARK 3 13 1.8998 - 1.8498 1.00 3316 146 0.1364 0.2001 REMARK 3 14 1.8498 - 1.8047 1.00 3284 201 0.1388 0.1813 REMARK 3 15 1.8047 - 1.7637 1.00 3324 162 0.1411 0.2044 REMARK 3 16 1.7637 - 1.7262 1.00 3351 159 0.1476 0.1858 REMARK 3 17 1.7262 - 1.6917 1.00 3256 183 0.1621 0.2178 REMARK 3 18 1.6917 - 1.6598 1.00 3308 170 0.1626 0.2424 REMARK 3 19 1.6598 - 1.6301 1.00 3307 166 0.1645 0.2389 REMARK 3 20 1.6301 - 1.6025 1.00 3270 195 0.1646 0.1921 REMARK 3 21 1.6025 - 1.5767 1.00 3284 180 0.1705 0.2277 REMARK 3 22 1.5767 - 1.5524 1.00 3291 160 0.1795 0.2530 REMARK 3 23 1.5524 - 1.5296 1.00 3265 188 0.1941 0.2329 REMARK 3 24 1.5296 - 1.5081 1.00 3287 198 0.1941 0.2564 REMARK 3 25 1.5081 - 1.4877 1.00 3274 168 0.2102 0.2413 REMARK 3 26 1.4877 - 1.4684 1.00 3299 201 0.2141 0.2817 REMARK 3 27 1.4684 - 1.4500 1.00 3247 186 0.2187 0.2628 REMARK 3 28 1.4500 - 1.4326 1.00 3266 186 0.2307 0.2829 REMARK 3 29 1.4326 - 1.4159 1.00 3257 191 0.2470 0.3266 REMARK 3 30 1.4159 - 1.4000 1.00 3286 176 0.2603 0.3014 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4349 REMARK 3 ANGLE : 0.848 5934 REMARK 3 CHIRALITY : 0.081 669 REMARK 3 PLANARITY : 0.005 745 REMARK 3 DIHEDRAL : 17.962 1586 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KVF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222676. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00004 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 105012 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 19.743 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.46200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE AND 22% PEG4000, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.84000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.12500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.08000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.12500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.84000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.08000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET E 298 REMARK 465 ARG E 299 REMARK 465 LEU E 300 REMARK 465 LYS E 301 REMARK 465 GLY E 302 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH H 517 O HOH H 522 2.00 REMARK 500 O HOH H 473 O HOH H 538 2.02 REMARK 500 O HOH H 440 O HOH H 582 2.02 REMARK 500 O HOH H 596 O HOH H 609 2.02 REMARK 500 O HOH E 739 O HOH H 636 2.02 REMARK 500 O HOH E 664 O HOH H 554 2.02 REMARK 500 O HOH L 306 O HOH L 398 2.03 REMARK 500 O HOH L 520 O HOH L 578 2.03 REMARK 500 O HOH L 447 O HOH L 571 2.03 REMARK 500 O HOH H 558 O HOH H 569 2.03 REMARK 500 O HOH E 683 O HOH E 723 2.03 REMARK 500 O HOH L 302 O HOH L 529 2.04 REMARK 500 O HOH H 425 O HOH H 527 2.05 REMARK 500 O HOH L 449 O HOH L 502 2.06 REMARK 500 O HOH L 464 O HOH L 566 2.08 REMARK 500 O HOH H 410 O HOH H 557 2.09 REMARK 500 O HOH E 699 O HOH E 709 2.10 REMARK 500 NZ LYS L 24 O HOH L 301 2.12 REMARK 500 O HOH H 559 O HOH H 591 2.13 REMARK 500 O3 GOL H 304 O HOH H 401 2.13 REMARK 500 O SER H 54 O HOH H 402 2.13 REMARK 500 O HOH L 537 O HOH L 576 2.13 REMARK 500 O HOH H 523 O HOH H 612 2.14 REMARK 500 O HOH L 303 O HOH L 511 2.14 REMARK 500 O HOH E 709 O HOH E 725 2.15 REMARK 500 O HOH E 703 O HOH L 408 2.15 REMARK 500 O HOH H 508 O HOH H 614 2.16 REMARK 500 OG SER L 30B O HOH L 302 2.16 REMARK 500 OG1 THR H 28 O HOH H 403 2.17 REMARK 500 NZ LYS H 62 O HOH H 404 2.18 REMARK 500 O HOH H 455 O HOH H 580 2.19 REMARK 500 O HOH H 503 O HOH H 569 2.19 REMARK 500 O HOH L 520 O HOH L 587 2.19 REMARK 500 NE2 GLN E 350 O HOH E 601 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH E 716 O HOH L 576 4445 1.99 REMARK 500 O HOH L 542 O HOH L 582 2544 2.05 REMARK 500 O HOH E 716 O HOH L 469 4445 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS H 208 CA - CB - SG ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA L 51 -31.88 69.97 REMARK 500 ALA L 84 168.20 179.68 REMARK 500 ASN L 138 60.42 65.93 REMARK 500 TYR H 97 61.99 -106.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN L 212 GLU L 213 -145.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL H 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL H 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL H 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KVD RELATED DB: PDB REMARK 900 RELATED ID: 5KVE RELATED DB: PDB REMARK 900 RELATED ID: 5KVG RELATED DB: PDB REMARK 900 RELATED ID: CSGID-IDP95734 RELATED DB: TARGETTRACK DBREF1 5KVF E 299 407 UNP A0A024B7W1_ZIKV DBREF2 5KVF E A0A024B7W1 589 697 DBREF 5KVF L 1 214 PDB 5KVF 5KVF 1 214 DBREF 5KVF H 1 230 PDB 5KVF 5KVF 1 230 SEQADV 5KVF MET E 298 UNP A0A024B7W INITIATING METHIONINE SEQRES 1 E 110 MET ARG LEU LYS GLY VAL SER TYR SER LEU CYS THR ALA SEQRES 2 E 110 ALA PHE THR PHE THR LYS ILE PRO ALA GLU THR LEU HIS SEQRES 3 E 110 GLY THR VAL THR VAL GLU VAL GLN TYR ALA GLY THR ASP SEQRES 4 E 110 GLY PRO CYS LYS VAL PRO ALA GLN MET ALA VAL ASP MET SEQRES 5 E 110 GLN THR LEU THR PRO VAL GLY ARG LEU ILE THR ALA ASN SEQRES 6 E 110 PRO VAL ILE THR GLU SER THR GLU ASN SER LYS MET MET SEQRES 7 E 110 LEU GLU LEU ASP PRO PRO PHE GLY ASP SER TYR ILE VAL SEQRES 8 E 110 ILE GLY VAL GLY GLU LYS LYS ILE THR HIS HIS TRP HIS SEQRES 9 E 110 ARG SER GLY SER THR ILE SEQRES 1 L 220 ASP ILE VAL MET SER GLN SER PRO SER SER LEU ALA VAL SEQRES 2 L 220 SER VAL GLY GLU LYS VAL THR MET SER CYS LYS SER SER SEQRES 3 L 220 GLN SER LEU LEU TYR SER SER ASN GLN LYS ASN TYR LEU SEQRES 4 L 220 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 L 220 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 L 220 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 L 220 LEU THR ILE SER SER VAL LYS ALA GLU ASP LEU ALA VAL SEQRES 8 L 220 TYR TYR CYS GLN GLN TYR TYR THR TYR PRO TYR THR PHE SEQRES 9 L 220 GLY GLY GLY THR LYS LEU GLU ILE ASN ARG ALA ASP ALA SEQRES 10 L 220 ALA PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN SEQRES 11 L 220 LEU THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN SEQRES 12 L 220 ASN PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE SEQRES 13 L 220 ASP GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP SEQRES 14 L 220 THR ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SEQRES 15 L 220 SER THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS SEQRES 16 L 220 ASN SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SEQRES 17 L 220 SER PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 H 221 PCA VAL GLN LEU GLN GLN PRO GLY ALA GLU LEU VAL LYS SEQRES 2 H 221 PRO GLY ALA SER VAL LYS LEU SER CYS LYS ALA SER GLY SEQRES 3 H 221 TYR THR PHE THR SER SER TRP MET HIS TRP VAL LYS GLN SEQRES 4 H 221 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY MET ILE HIS SEQRES 5 H 221 PRO ASN SER GLY SER THR ASN TYR ASN GLU LYS PHE LYS SEQRES 6 H 221 ASN LYS ALA THR LEU THR VAL ASP LYS SER SER SER THR SEQRES 7 H 221 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 H 221 ALA VAL TYR TYR CYS ALA ARG TYR TYR TYR ASP TYR ASP SEQRES 9 H 221 GLY MET ASP TYR TRP GLY GLN GLY THR SER VAL THR VAL SEQRES 10 H 221 SER SER ALA LYS THR THR ALA PRO SER VAL TYR PRO LEU SEQRES 11 H 221 ALA PRO VAL CYS GLY GLY THR THR GLY SER SER VAL THR SEQRES 12 H 221 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL SEQRES 13 H 221 THR LEU THR TRP ASN SER GLY SER LEU SER SER GLY VAL SEQRES 14 H 221 HIS THR PHE PRO ALA LEU LEU GLN SER GLY LEU TYR THR SEQRES 15 H 221 LEU SER SER SER VAL THR VAL THR SER ASN THR TRP PRO SEQRES 16 H 221 SER GLN THR ILE THR CYS ASN VAL ALA HIS PRO ALA SER SEQRES 17 H 221 SER THR LYS VAL ASP LYS LYS ILE GLU PRO ARG VAL PRO HET PCA H 1 8 HET GOL E 501 6 HET GOL H 301 6 HET GOL H 302 6 HET GOL H 303 6 HET GOL H 304 14 HETNAM PCA PYROGLUTAMIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PCA C5 H7 N O3 FORMUL 4 GOL 5(C3 H8 O3) FORMUL 9 HOH *676(H2 O) HELIX 1 AA1 VAL E 391 LYS E 395 5 5 HELIX 2 AA2 LYS L 79 LEU L 83 5 5 HELIX 3 AA3 SER L 121 SER L 127 1 7 HELIX 4 AA4 LYS L 183 GLU L 187 1 5 HELIX 5 AA5 THR H 28 SER H 32 5 5 HELIX 6 AA6 GLU H 61 LYS H 64 5 4 HELIX 7 AA7 LYS H 73 SER H 75 5 3 HELIX 8 AA8 THR H 83 SER H 87 5 5 HELIX 9 AA9 SER H 163 SER H 165 5 3 HELIX 10 AB1 PRO H 213 SER H 216 5 4 SHEET 1 AA1 3 PHE E 312 PHE E 314 0 SHEET 2 AA1 3 VAL E 326 TYR E 332 -1 O GLN E 331 N THR E 313 SHEET 3 AA1 3 ALA E 319 GLU E 320 -1 N ALA E 319 O THR E 327 SHEET 1 AA2 4 PHE E 312 PHE E 314 0 SHEET 2 AA2 4 VAL E 326 TYR E 332 -1 O GLN E 331 N THR E 313 SHEET 3 AA2 4 SER E 372 ASP E 379 -1 O MET E 374 N VAL E 330 SHEET 4 AA2 4 ARG E 357 LEU E 358 -1 N ARG E 357 O ASP E 379 SHEET 1 AA3 2 CYS E 339 LYS E 340 0 SHEET 2 AA3 2 VAL E 364 ILE E 365 -1 O ILE E 365 N CYS E 339 SHEET 1 AA4 4 PRO E 354 VAL E 355 0 SHEET 2 AA4 4 ALA E 343 ALA E 346 -1 N MET E 345 O VAL E 355 SHEET 3 AA4 4 GLY E 383 ILE E 389 -1 O TYR E 386 N ALA E 346 SHEET 4 AA4 4 ILE E 396 ARG E 402 -1 O ARG E 402 N GLY E 383 SHEET 1 AA5 4 MET L 4 SER L 7 0 SHEET 2 AA5 4 VAL L 19 SER L 25 -1 O LYS L 24 N SER L 5 SHEET 3 AA5 4 ASP L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 AA5 4 PHE L 62 SER L 67 -1 N THR L 63 O THR L 74 SHEET 1 AA6 6 SER L 10 SER L 14 0 SHEET 2 AA6 6 THR L 102 ASN L 107 1 O ASN L 107 N VAL L 13 SHEET 3 AA6 6 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 AA6 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AA6 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA6 6 THR L 53 ARG L 54 -1 O THR L 53 N TYR L 49 SHEET 1 AA7 4 SER L 10 SER L 14 0 SHEET 2 AA7 4 THR L 102 ASN L 107 1 O ASN L 107 N VAL L 13 SHEET 3 AA7 4 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 AA7 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AA8 2 LEU L 30 TYR L 30A 0 SHEET 2 AA8 2 LYS L 30F ASN L 31 -1 O LYS L 30F N TYR L 30A SHEET 1 AA9 4 THR L 114 PHE L 118 0 SHEET 2 AA9 4 GLY L 129 PHE L 139 -1 O ASN L 137 N THR L 114 SHEET 3 AA9 4 TYR L 173 THR L 182 -1 O TYR L 173 N PHE L 139 SHEET 4 AA9 4 VAL L 159 TRP L 163 -1 N LEU L 160 O THR L 178 SHEET 1 AB1 4 SER L 153 ARG L 155 0 SHEET 2 AB1 4 ILE L 144 ILE L 150 -1 N ILE L 150 O SER L 153 SHEET 3 AB1 4 SER L 191 HIS L 198 -1 O GLU L 195 N LYS L 147 SHEET 4 AB1 4 SER L 201 ASN L 210 -1 O ILE L 205 N ALA L 196 SHEET 1 AB2 4 GLN H 3 GLN H 5 0 SHEET 2 AB2 4 VAL H 18 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 3 AB2 4 THR H 77 LEU H 82 -1 O MET H 80 N LEU H 20 SHEET 4 AB2 4 ALA H 67 ASP H 72 -1 N THR H 70 O TYR H 79 SHEET 1 AB3 6 ALA H 9 VAL H 12 0 SHEET 2 AB3 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AB3 6 ALA H 88 ARG H 94 -1 N ALA H 88 O VAL H 109 SHEET 4 AB3 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AB3 6 GLU H 46 ILE H 51 -1 O ILE H 51 N MET H 34 SHEET 6 AB3 6 THR H 57 TYR H 59 -1 O ASN H 58 N MET H 50 SHEET 1 AB4 4 ALA H 9 VAL H 12 0 SHEET 2 AB4 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AB4 4 ALA H 88 ARG H 94 -1 N ALA H 88 O VAL H 109 SHEET 4 AB4 4 TYR H 102 TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 AB5 4 SER H 120 LEU H 124 0 SHEET 2 AB5 4 SER H 137 TYR H 147 -1 O LEU H 143 N TYR H 122 SHEET 3 AB5 4 LEU H 184 THR H 194 -1 O LEU H 187 N VAL H 144 SHEET 4 AB5 4 VAL H 171 GLN H 179 -1 N GLN H 179 O LEU H 184 SHEET 1 AB6 3 THR H 153 TRP H 157 0 SHEET 2 AB6 3 THR H 206 HIS H 212 -1 O ASN H 209 N THR H 156 SHEET 3 AB6 3 THR H 217 LYS H 222 -1 O VAL H 219 N VAL H 210 SSBOND 1 CYS E 308 CYS E 339 1555 1555 2.05 SSBOND 2 CYS L 23 CYS L 88 1555 1555 2.07 SSBOND 3 CYS L 134 CYS L 194 1555 1555 2.00 SSBOND 4 CYS L 214 CYS H 128 1555 1555 2.03 SSBOND 5 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 6 CYS H 142 CYS H 208 1555 1555 2.03 LINK C PCA H 1 N VAL H 2 1555 1555 1.33 CISPEP 1 GLY E 337 PRO E 338 0 4.53 CISPEP 2 SER L 7 PRO L 8 0 -7.33 CISPEP 3 TYR L 94 PRO L 95 0 -0.53 CISPEP 4 TYR L 140 PRO L 141 0 4.85 CISPEP 5 PHE H 148 PRO H 149 0 -6.42 CISPEP 6 GLU H 150 PRO H 151 0 -3.71 CISPEP 7 TRP H 199 PRO H 200 0 4.16 SITE 1 AC1 10 HIS E 401 SER E 403 GLY E 404 HOH E 605 SITE 2 AC1 10 HOH E 679 TYR H 122 LYS H 221 HOH H 487 SITE 3 AC1 10 HOH L 319 HOH L 414 SITE 1 AC2 4 GLU H 10 VAL H 18 LYS H 19 HOH H 533 SITE 1 AC3 7 MET E 375 HOH E 612 LYS H 38 GLU H 46 SITE 2 AC3 7 PHE H 63 LYS H 66 HOH H 448 SITE 1 AC4 6 ALA H 88 SER H 108 VAL H 109 THR H 110 SITE 2 AC4 6 HOH H 412 HOH H 436 SITE 1 AC5 5 GLY H 8 PRO H 213 HOH H 401 HOH H 418 SITE 2 AC5 5 HOH H 610 CRYST1 59.680 92.160 96.250 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016756 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010851 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010390 0.00000