HEADER CELL ADHESION 14-JUL-16 5KVM TITLE EXTRACELLULAR REGION OF MOUSE GPR56/ADGRG1 IN COMPLEX WITH FN3 TITLE 2 MONOBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADHESION G-PROTEIN COUPLED RECEPTOR G1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL FRAGMENT (UNP RESIDUES 28-382); COMPND 5 SYNONYM: G-PROTEIN COUPLED RECEPTOR 56,SERPENTINE RECEPTOR CYT28; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ADHESION G-PROTEIN COUPLED RECEPTOR G1; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: C-TERMINAL FRAGMENT (UNP RESIDUES 383-391); COMPND 11 SYNONYM: G-PROTEIN COUPLED RECEPTOR 56,SERPENTINE RECEPTOR CYT28; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: FN3 MONOBODY ALPHA5; COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ADGRG1, CYT28, GPR56; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_CELL: HIGH FIVE; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 GENE: ADGRG1, CYT28, GPR56; SOURCE 14 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 16 EXPRESSION_SYSTEM_CELL: HIGH FIVE; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 19 ORGANISM_TAXID: 32630; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 22 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS ADHESION-GPCR, MONOBODY, PLL, GAIN, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR G.S.SALZMAN,C.DING,S.KOIDE,D.ARAC REVDAT 5 29-JUL-20 5KVM 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 25-DEC-19 5KVM 1 REMARK REVDAT 3 18-APR-18 5KVM 1 JRNL REVDAT 2 27-SEP-17 5KVM 1 JRNL REMARK REVDAT 1 28-SEP-16 5KVM 0 JRNL AUTH G.S.SALZMAN,S.D.ACKERMAN,C.DING,A.KOIDE,K.LEON,R.LUO, JRNL AUTH 2 H.M.STOVEKEN,C.G.FERNANDEZ,G.G.TALL,X.PIAO,K.R.MONK,S.KOIDE, JRNL AUTH 3 D.ARAC JRNL TITL STRUCTURAL BASIS FOR REGULATION OF GPR56/ADGRG1 BY ITS JRNL TITL 2 ALTERNATIVELY SPLICED EXTRACELLULAR DOMAINS. JRNL REF NEURON V. 91 1292 2016 JRNL REFN ISSN 1097-4199 JRNL PMID 27657451 JRNL DOI 10.1016/J.NEURON.2016.08.022 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22242 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.220 REMARK 3 FREE R VALUE TEST SET COUNT : 1162 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3994 - 4.8958 1.00 2708 143 0.1982 0.2221 REMARK 3 2 4.8958 - 3.8866 1.00 2624 162 0.1838 0.2410 REMARK 3 3 3.8866 - 3.3955 1.00 2659 136 0.2225 0.2834 REMARK 3 4 3.3955 - 3.0851 1.00 2624 145 0.2242 0.2792 REMARK 3 5 3.0851 - 2.8640 1.00 2602 148 0.2501 0.3267 REMARK 3 6 2.8640 - 2.6952 1.00 2629 144 0.2542 0.3397 REMARK 3 7 2.6952 - 2.5602 1.00 2617 140 0.2740 0.3091 REMARK 3 8 2.5602 - 2.4488 0.99 2617 144 0.2927 0.3463 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3783 REMARK 3 ANGLE : 0.611 5182 REMARK 3 CHIRALITY : 0.043 601 REMARK 3 PLANARITY : 0.004 656 REMARK 3 DIHEDRAL : 13.315 2237 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0126 17.3927 19.4839 REMARK 3 T TENSOR REMARK 3 T11: 0.6885 T22: 0.6684 REMARK 3 T33: 0.5559 T12: 0.2151 REMARK 3 T13: -0.0055 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 7.0355 L22: 4.7209 REMARK 3 L33: 4.5864 L12: -0.7876 REMARK 3 L13: -1.1051 L23: 0.9204 REMARK 3 S TENSOR REMARK 3 S11: -0.0373 S12: 0.6548 S13: -0.0504 REMARK 3 S21: 0.1365 S22: -0.0729 S23: 0.3793 REMARK 3 S31: -0.0629 S32: -0.9045 S33: 0.0485 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 382 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.6748 12.5054 -15.9711 REMARK 3 T TENSOR REMARK 3 T11: 0.9274 T22: 0.4696 REMARK 3 T33: 0.5396 T12: 0.3188 REMARK 3 T13: -0.1937 T23: -0.0854 REMARK 3 L TENSOR REMARK 3 L11: 2.5490 L22: 2.4503 REMARK 3 L33: 5.4765 L12: 0.1498 REMARK 3 L13: 0.5413 L23: 1.2037 REMARK 3 S TENSOR REMARK 3 S11: -0.1029 S12: 0.3214 S13: 0.2804 REMARK 3 S21: -0.4666 S22: -0.3331 S23: 0.3630 REMARK 3 S31: -1.0900 S32: -0.7760 S33: 0.2165 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 383 THROUGH 391 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.7722 15.4427 -24.6810 REMARK 3 T TENSOR REMARK 3 T11: 1.2221 T22: 0.5103 REMARK 3 T33: 0.6703 T12: 0.2346 REMARK 3 T13: -0.2258 T23: -0.0478 REMARK 3 L TENSOR REMARK 3 L11: 5.9618 L22: 3.5443 REMARK 3 L33: 7.0465 L12: -0.1495 REMARK 3 L13: -2.3020 L23: -0.8512 REMARK 3 S TENSOR REMARK 3 S11: 0.4870 S12: 0.5650 S13: -0.2391 REMARK 3 S21: -0.5418 S22: -0.2884 S23: -0.1913 REMARK 3 S31: -1.7588 S32: -0.1374 S33: -0.0625 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 5 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.5185 7.2707 11.6813 REMARK 3 T TENSOR REMARK 3 T11: 0.9129 T22: 0.7348 REMARK 3 T33: 0.9064 T12: -0.0923 REMARK 3 T13: 0.0979 T23: 0.6588 REMARK 3 L TENSOR REMARK 3 L11: 4.7600 L22: 4.9559 REMARK 3 L33: 7.2750 L12: -4.6158 REMARK 3 L13: 1.7702 L23: 0.0337 REMARK 3 S TENSOR REMARK 3 S11: 0.5855 S12: 0.3476 S13: 0.2598 REMARK 3 S21: -2.0944 S22: 0.8379 S23: 0.6415 REMARK 3 S31: 0.3367 S32: -0.1174 S33: -0.1167 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 10 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.8725 12.2997 20.3869 REMARK 3 T TENSOR REMARK 3 T11: 0.9115 T22: 0.3851 REMARK 3 T33: 0.4853 T12: -0.0586 REMARK 3 T13: -0.1261 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 4.0852 L22: 5.6740 REMARK 3 L33: 6.1394 L12: 0.4313 REMARK 3 L13: -2.7213 L23: -3.4267 REMARK 3 S TENSOR REMARK 3 S11: -0.1665 S12: -0.4888 S13: 0.1252 REMARK 3 S21: 0.4259 S22: -0.1323 S23: 0.0630 REMARK 3 S31: -1.0742 S32: 0.6129 S33: 0.2897 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 41 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.1252 11.8808 20.8186 REMARK 3 T TENSOR REMARK 3 T11: 0.9964 T22: 0.3448 REMARK 3 T33: 0.5865 T12: 0.0716 REMARK 3 T13: -0.0339 T23: -0.0948 REMARK 3 L TENSOR REMARK 3 L11: 5.1246 L22: 1.5763 REMARK 3 L33: 0.8735 L12: -0.4077 REMARK 3 L13: -0.5343 L23: -0.9947 REMARK 3 S TENSOR REMARK 3 S11: -0.3351 S12: -0.2492 S13: -0.8920 REMARK 3 S21: 0.4297 S22: 0.3397 S23: 0.1122 REMARK 3 S31: -1.2428 S32: -0.3034 S33: -0.0689 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 55 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.5589 10.9936 23.5303 REMARK 3 T TENSOR REMARK 3 T11: 0.9293 T22: 0.3492 REMARK 3 T33: 0.5102 T12: 0.0023 REMARK 3 T13: -0.0062 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 5.2438 L22: 1.5331 REMARK 3 L33: 5.9118 L12: 0.3110 REMARK 3 L13: -3.2123 L23: -1.8790 REMARK 3 S TENSOR REMARK 3 S11: 0.1512 S12: -0.5726 S13: -0.3636 REMARK 3 S21: 0.6312 S22: -0.0934 S23: 0.0166 REMARK 3 S31: -0.5900 S32: 0.6674 S33: -0.0283 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 79 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.7790 10.9546 10.4944 REMARK 3 T TENSOR REMARK 3 T11: 0.7636 T22: 0.2350 REMARK 3 T33: 0.4982 T12: -0.0229 REMARK 3 T13: -0.0720 T23: -0.0383 REMARK 3 L TENSOR REMARK 3 L11: 1.2092 L22: 3.0281 REMARK 3 L33: 0.2069 L12: -0.7460 REMARK 3 L13: -0.1401 L23: 0.1536 REMARK 3 S TENSOR REMARK 3 S11: -0.0963 S12: -0.0016 S13: -0.0604 REMARK 3 S21: 0.3238 S22: -0.2669 S23: 0.0373 REMARK 3 S31: -1.2850 S32: 0.0264 S33: 0.2007 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KVM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222801. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22286 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.449 REMARK 200 RESOLUTION RANGE LOW (A) : 46.391 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.42100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 80 MM SODIUM ACETATE PH 4.6, 19.5% REMARK 280 GLYCEROL, 16.9% PEG 600, 7.6% PEG 1000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.56667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.28333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.42500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 12.14167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.70833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 79 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 VAL A 168 CG1 CG2 REMARK 470 LYS A 195 CG CD CE NZ REMARK 470 LEU A 246 CG CD1 CD2 REMARK 470 GLU A 247 CG CD OE1 OE2 REMARK 470 LYS A 255 CG CD CE NZ REMARK 470 GLU A 256 CG CD OE1 OE2 REMARK 470 GLU A 258 CG CD OE1 OE2 REMARK 470 GLN A 259 CG CD OE1 NE2 REMARK 470 SER A 260 OG REMARK 470 GLU A 261 CG CD OE1 OE2 REMARK 470 ARG A 280 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 281 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 282 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 283 CG OD1 OD2 REMARK 470 ASP A 284 CG OD1 OD2 REMARK 470 LYS A 302 CG CD CE NZ REMARK 470 LYS A 340 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 213 O HOH A 1001 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 160 -165.87 -129.39 REMARK 500 GLN A 259 57.89 -90.55 REMARK 500 GLU A 261 -9.56 84.37 REMARK 500 ARG A 282 -9.04 85.61 REMARK 500 ASN A 303 -2.28 77.36 REMARK 500 ASN A 380 31.52 -92.98 REMARK 500 ALA C 28 37.93 -81.68 REMARK 500 TYR C 88 -40.16 65.72 REMARK 500 REMARK 500 REMARK: NULL DBREF 5KVM A 28 382 UNP Q8K209 AGRG1_MOUSE 28 382 DBREF 5KVM B 383 391 UNP Q8K209 AGRG1_MOUSE 383 391 DBREF 5KVM C 5 99 PDB 5KVM 5KVM 5 99 SEQRES 1 A 355 PRO ARG GLU ASP PHE ARG PHE CYS GLY GLN ARG ASN GLN SEQRES 2 A 355 THR GLN GLN SER THR LEU HIS TYR ASP GLN SER SER GLU SEQRES 3 A 355 PRO HIS ILE PHE VAL TRP ASN THR GLU GLU THR LEU THR SEQRES 4 A 355 ILE ARG ALA PRO PHE LEU ALA ALA PRO ASP ILE PRO ARG SEQRES 5 A 355 PHE PHE PRO GLU PRO ARG GLY LEU TYR HIS PHE CYS LEU SEQRES 6 A 355 TYR TRP SER ARG HIS THR GLY ARG LEU HIS LEU ARG TYR SEQRES 7 A 355 GLY LYS HIS ASP TYR LEU LEU SER SER GLN ALA SER ARG SEQRES 8 A 355 LEU LEU CYS PHE GLN LYS GLN GLU GLN SER LEU LYS GLN SEQRES 9 A 355 GLY ALA PRO LEU ILE ALA THR SER VAL SER SER TRP GLN SEQRES 10 A 355 ILE PRO GLN ASN THR SER LEU PRO GLY ALA PRO SER PHE SEQRES 11 A 355 ILE PHE SER PHE HIS ASN ALA PRO HIS LYS VAL SER HIS SEQRES 12 A 355 ASN ALA SER VAL ASP MET CYS ASP LEU LYS LYS GLU LEU SEQRES 13 A 355 GLN GLN LEU SER ARG TYR LEU GLN HIS PRO GLN LYS ALA SEQRES 14 A 355 ALA LYS ARG PRO THR ALA ALA PHE ILE SER GLN GLN LEU SEQRES 15 A 355 GLN SER LEU GLU SER LYS LEU THR SER VAL SER PHE LEU SEQRES 16 A 355 GLY ASP THR LEU SER PHE GLU GLU ASP ARG VAL ASN ALA SEQRES 17 A 355 THR VAL TRP LYS LEU PRO PRO THR ALA GLY LEU GLU ASP SEQRES 18 A 355 LEU HIS ILE HIS SER GLN LYS GLU GLU GLU GLN SER GLU SEQRES 19 A 355 VAL GLN ALA TYR SER LEU LEU LEU PRO ARG ALA VAL PHE SEQRES 20 A 355 GLN GLN THR ARG GLY ARG ARG ARG ASP ASP ALA LYS ARG SEQRES 21 A 355 LEU LEU VAL VAL ASP PHE SER SER GLN ALA LEU PHE GLN SEQRES 22 A 355 ASP LYS ASN SER SER GLN VAL LEU GLY GLU LYS VAL LEU SEQRES 23 A 355 GLY ILE VAL VAL GLN ASN THR LYS VAL THR ASN LEU SER SEQRES 24 A 355 ASP PRO VAL VAL LEU THR PHE GLN HIS GLN PRO GLN PRO SEQRES 25 A 355 LYS ASN VAL THR LEU GLN CYS VAL PHE TRP VAL GLU ASP SEQRES 26 A 355 PRO ALA SER SER SER THR GLY SER TRP SER SER ALA GLY SEQRES 27 A 355 CYS GLU THR VAL SER ARG ASP THR GLN THR SER CYS LEU SEQRES 28 A 355 CYS ASN HIS LEU SEQRES 1 B 9 THR TYR PHE ALA VAL LEU MET VAL SER SEQRES 1 C 95 SER VAL PRO THR LYS LEU GLU VAL VAL ALA ALA THR PRO SEQRES 2 C 95 THR SER LEU LEU ILE SER TRP ASP ALA PRO ALA VAL THR SEQRES 3 C 95 VAL ASP HIS TYR VAL ILE THR TYR GLY GLU THR GLY GLY SEQRES 4 C 95 SER PRO TRP SER TRP GLN GLU PHE GLU VAL PRO GLY SER SEQRES 5 C 95 LYS SER THR ALA THR ILE SER GLY LEU LYS PRO GLY VAL SEQRES 6 C 95 ASP TYR THR ILE THR VAL TYR ALA SER SER PHE ASP TRP SEQRES 7 C 95 THR ILE PHE PRO ASN TYR TYR SER SER PRO ILE SER ILE SEQRES 8 C 95 ASN TYR ARG THR HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET BMA D 4 11 HET NAG E 1 14 HET NAG E 2 14 HET NAG A 900 14 HET GOL A 907 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 NAG 5(C8 H15 N O6) FORMUL 4 BMA 2(C6 H12 O6) FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *24(H2 O) HELIX 1 AA1 ASP A 175 HIS A 192 1 18 HELIX 2 AA2 PRO A 193 ALA A 196 5 4 HELIX 3 AA3 THR A 201 VAL A 219 1 19 HELIX 4 AA4 PRO A 241 GLU A 247 5 7 HELIX 5 AA5 PRO A 270 GLN A 275 1 6 HELIX 6 AA6 VAL A 307 GLY A 309 5 3 HELIX 7 AA7 SER C 44 TRP C 48 5 5 SHEET 1 AA1 6 HIS A 108 SER A 113 0 SHEET 2 AA1 6 ARG A 100 TYR A 105 -1 N LEU A 103 O TYR A 110 SHEET 3 AA1 6 GLY A 86 SER A 95 -1 N TYR A 93 O HIS A 102 SHEET 4 AA1 6 PHE A 32 GLN A 40 -1 N PHE A 34 O LEU A 92 SHEET 5 AA1 6 ILE A 136 SER A 142 -1 O ILE A 136 N GLN A 37 SHEET 6 AA1 6 THR A 149 SER A 150 -1 O THR A 149 N VAL A 140 SHEET 1 AA2 5 THR A 45 GLN A 50 0 SHEET 2 AA2 5 THR A 64 ALA A 69 1 O ILE A 67 N HIS A 47 SHEET 3 AA2 5 ILE A 56 ASN A 60 -1 N TRP A 59 O THR A 66 SHEET 4 AA2 5 SER A 156 SER A 160 -1 O PHE A 157 N VAL A 58 SHEET 5 AA2 5 LYS A 124 GLU A 126 -1 N LYS A 124 O SER A 160 SHEET 1 AA3 7 THR A 225 GLU A 230 0 SHEET 2 AA3 7 VAL A 233 LYS A 239 -1 O ALA A 235 N PHE A 228 SHEET 3 AA3 7 ARG A 287 SER A 294 -1 O ASP A 292 N ASN A 234 SHEET 4 AA3 7 LYS A 311 VAL A 317 -1 O GLY A 314 N VAL A 291 SHEET 5 AA3 7 TYR B 384 VAL B 390 -1 O PHE B 385 N LEU A 313 SHEET 6 AA3 7 THR A 343 VAL A 350 -1 N THR A 343 O VAL B 390 SHEET 7 AA3 7 SER A 360 SER A 362 -1 O SER A 362 N PHE A 348 SHEET 1 AA4 5 LEU A 249 HIS A 252 0 SHEET 2 AA4 5 VAL A 262 LEU A 269 -1 O LEU A 269 N LEU A 249 SHEET 3 AA4 5 VAL A 329 HIS A 335 -1 O GLN A 334 N GLN A 263 SHEET 4 AA4 5 GLN A 374 CYS A 379 -1 O CYS A 377 N LEU A 331 SHEET 5 AA4 5 CYS A 366 SER A 370 -1 N GLU A 367 O LEU A 378 SHEET 1 AA5 3 LEU C 10 ALA C 15 0 SHEET 2 AA5 3 LEU C 20 TRP C 24 -1 O SER C 23 N GLU C 11 SHEET 3 AA5 3 THR C 59 ILE C 62 -1 O ILE C 62 N LEU C 20 SHEET 1 AA6 4 GLN C 49 PRO C 54 0 SHEET 2 AA6 4 HIS C 33 GLU C 40 -1 N TYR C 34 O VAL C 53 SHEET 3 AA6 4 TYR C 71 SER C 78 -1 O TYR C 76 N VAL C 35 SHEET 4 AA6 4 ILE C 93 TYR C 97 -1 O TYR C 97 N TYR C 71 SSBOND 1 CYS A 35 CYS A 91 1555 1555 2.03 SSBOND 2 CYS A 121 CYS A 177 1555 1555 2.03 SSBOND 3 CYS A 346 CYS A 377 1555 1555 2.02 SSBOND 4 CYS A 366 CYS A 379 1555 1555 2.03 LINK ND2 ASN A 39 C1 NAG A 900 1555 1555 1.44 LINK ND2 ASN A 148 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 234 C1 NAG E 1 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O6 BMA D 3 C1 BMA D 4 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 CRYST1 120.336 120.336 72.850 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008310 0.004798 0.000000 0.00000 SCALE2 0.000000 0.009596 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013727 0.00000