HEADER OXIDOREDUCTASE 15-JUL-16 5KVQ TITLE NADP+ BOUND STRUCTURE OF IRP3, A THIAZOLINYL IMINE REDUCTASE FROM TITLE 2 YERSINIA ENTEROCOLITICA COMPND MOL_ID: 1; COMPND 2 MOLECULE: IRP3 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA ENTEROCOLITICA; SOURCE 3 ORGANISM_TAXID: 630; SOURCE 4 ATCC: 33114; SOURCE 5 GENE: IRP3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS IMINE REDUCTASE, OXIDOREDUCTASE, THIAZOLINYL, SIDEROPHORE, KEYWDS 2 YERSINIABACTIN EXPDTA X-RAY DIFFRACTION AUTHOR K.M.MENEELY,A.L.LAMB REVDAT 5 04-OCT-23 5KVQ 1 REMARK REVDAT 4 27-NOV-19 5KVQ 1 REMARK REVDAT 3 20-SEP-17 5KVQ 1 JRNL REMARK REVDAT 2 05-OCT-16 5KVQ 1 JRNL REVDAT 1 21-SEP-16 5KVQ 0 JRNL AUTH K.M.MENEELY,T.A.RONNEBAUM,A.P.RILEY,T.E.PRISINZANO,A.L.LAMB JRNL TITL HOLO STRUCTURE AND STEADY STATE KINETICS OF THE THIAZOLINYL JRNL TITL 2 IMINE REDUCTASES FOR SIDEROPHORE BIOSYNTHESIS. JRNL REF BIOCHEMISTRY V. 55 5423 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 27601130 JRNL DOI 10.1021/ACS.BIOCHEM.6B00735 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 136022 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 6819 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7557 - 4.4976 0.98 4358 245 0.1538 0.1738 REMARK 3 2 4.4976 - 3.5706 0.99 4377 215 0.1421 0.1554 REMARK 3 3 3.5706 - 3.1194 0.98 4271 232 0.1592 0.1700 REMARK 3 4 3.1194 - 2.8343 0.99 4360 227 0.1561 0.1679 REMARK 3 5 2.8343 - 2.6312 1.00 4380 223 0.1499 0.1626 REMARK 3 6 2.6312 - 2.4761 0.99 4352 219 0.1455 0.1731 REMARK 3 7 2.4761 - 2.3521 0.97 4230 226 0.1415 0.1572 REMARK 3 8 2.3521 - 2.2497 0.98 4297 230 0.1398 0.1552 REMARK 3 9 2.2497 - 2.1631 0.99 4308 225 0.1416 0.1713 REMARK 3 10 2.1631 - 2.0885 0.99 4372 243 0.1448 0.1510 REMARK 3 11 2.0885 - 2.0232 0.99 4372 217 0.1498 0.1703 REMARK 3 12 2.0232 - 1.9654 1.00 4333 240 0.1534 0.1723 REMARK 3 13 1.9654 - 1.9136 0.96 4234 217 0.1541 0.1894 REMARK 3 14 1.9136 - 1.8669 0.97 4260 221 0.1569 0.1943 REMARK 3 15 1.8669 - 1.8245 0.98 4303 238 0.1517 0.1792 REMARK 3 16 1.8245 - 1.7857 0.99 4333 215 0.1567 0.1942 REMARK 3 17 1.7857 - 1.7499 0.99 4291 247 0.1637 0.1863 REMARK 3 18 1.7499 - 1.7169 0.99 4261 260 0.1624 0.1874 REMARK 3 19 1.7169 - 1.6863 1.00 4386 254 0.1669 0.1969 REMARK 3 20 1.6863 - 1.6577 0.99 4317 219 0.1776 0.2287 REMARK 3 21 1.6577 - 1.6309 0.98 4344 243 0.1866 0.2191 REMARK 3 22 1.6309 - 1.6058 0.96 4168 228 0.1943 0.2141 REMARK 3 23 1.6058 - 1.5822 0.98 4296 210 0.1926 0.2103 REMARK 3 24 1.5822 - 1.5599 0.99 4350 216 0.1952 0.2244 REMARK 3 25 1.5599 - 1.5389 0.99 4282 210 0.2077 0.2202 REMARK 3 26 1.5389 - 1.5189 0.99 4319 226 0.2249 0.2608 REMARK 3 27 1.5189 - 1.4999 0.99 4401 204 0.2284 0.2449 REMARK 3 28 1.4999 - 1.4818 0.99 4274 232 0.2365 0.2478 REMARK 3 29 1.4818 - 1.4646 0.99 4381 235 0.2557 0.2889 REMARK 3 30 1.4646 - 1.4481 0.91 3993 202 0.2922 0.3122 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5910 REMARK 3 ANGLE : 1.147 8095 REMARK 3 CHIRALITY : 0.132 892 REMARK 3 PLANARITY : 0.008 1041 REMARK 3 DIHEDRAL : 14.498 2149 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -9.9514 -28.5889 -15.5042 REMARK 3 T TENSOR REMARK 3 T11: 0.0769 T22: 0.1283 REMARK 3 T33: 0.0957 T12: -0.0023 REMARK 3 T13: -0.0141 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.1072 L22: 0.8080 REMARK 3 L33: 0.3091 L12: 0.0039 REMARK 3 L13: -0.0397 L23: 0.2642 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: 0.0046 S13: -0.0063 REMARK 3 S21: 0.0257 S22: 0.0109 S23: -0.0451 REMARK 3 S31: -0.0006 S32: -0.0001 S33: -0.0291 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KVQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222806. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI(111) SIDE SCATTERING I-BEAM REMARK 200 BENT SINGLE CRYSTAL; ASYMMETRIC REMARK 200 CUT 4.9650 DEG. REMARK 200 OPTICS : RH COATED FLAT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 136095 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 39.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.85000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4GMG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 20% PEG 8,000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 74.25300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 465 ALA A 4 REMARK 465 ASP A 359 REMARK 465 ASP A 360 REMARK 465 ASP A 361 REMARK 465 LYS A 362 REMARK 465 GLU A 363 REMARK 465 ALA A 364 REMARK 465 LEU A 365 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 SER B 3 REMARK 465 ASP B 359 REMARK 465 ASP B 360 REMARK 465 ASP B 361 REMARK 465 LYS B 362 REMARK 465 GLU B 363 REMARK 465 ALA B 364 REMARK 465 LEU B 365 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 697 O HOH A 705 1.82 REMARK 500 O HOH A 509 O HOH A 528 1.95 REMARK 500 O HOH A 632 O HOH A 673 1.95 REMARK 500 O HOH A 590 O HOH B 720 1.99 REMARK 500 O HOH A 623 O HOH A 709 2.03 REMARK 500 O HOH A 656 O HOH A 717 2.07 REMARK 500 O HOH A 565 O HOH B 566 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL B 78 CG1 - CB - CG2 ANGL. DEV. = 11.5 DEGREES REMARK 500 ARG B 161 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 16 -90.91 -98.06 REMARK 500 ALA A 39 -146.32 -152.50 REMARK 500 VAL A 73 59.24 -118.36 REMARK 500 PHE A 127 -58.46 78.71 REMARK 500 LEU A 148 -162.39 -106.71 REMARK 500 HIS A 221 30.86 76.41 REMARK 500 THR A 292 -55.00 -123.66 REMARK 500 LYS B 16 -91.40 -99.30 REMARK 500 ALA B 39 -147.21 -150.61 REMARK 500 VAL B 73 59.62 -115.10 REMARK 500 PHE B 127 -58.52 78.81 REMARK 500 LEU B 148 -159.19 -108.49 REMARK 500 THR B 292 -56.66 -127.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KVS RELATED DB: PDB DBREF 5KVQ A 1 365 UNP O54512 O54512_YEREN 1 365 DBREF 5KVQ B 1 365 UNP O54512 O54512_YEREN 1 365 SEQADV 5KVQ MET A -19 UNP O54512 INITIATING METHIONINE SEQADV 5KVQ GLY A -18 UNP O54512 EXPRESSION TAG SEQADV 5KVQ SER A -17 UNP O54512 EXPRESSION TAG SEQADV 5KVQ SER A -16 UNP O54512 EXPRESSION TAG SEQADV 5KVQ HIS A -15 UNP O54512 EXPRESSION TAG SEQADV 5KVQ HIS A -14 UNP O54512 EXPRESSION TAG SEQADV 5KVQ HIS A -13 UNP O54512 EXPRESSION TAG SEQADV 5KVQ HIS A -12 UNP O54512 EXPRESSION TAG SEQADV 5KVQ HIS A -11 UNP O54512 EXPRESSION TAG SEQADV 5KVQ HIS A -10 UNP O54512 EXPRESSION TAG SEQADV 5KVQ SER A -9 UNP O54512 EXPRESSION TAG SEQADV 5KVQ SER A -8 UNP O54512 EXPRESSION TAG SEQADV 5KVQ GLY A -7 UNP O54512 EXPRESSION TAG SEQADV 5KVQ LEU A -6 UNP O54512 EXPRESSION TAG SEQADV 5KVQ VAL A -5 UNP O54512 EXPRESSION TAG SEQADV 5KVQ PRO A -4 UNP O54512 EXPRESSION TAG SEQADV 5KVQ ARG A -3 UNP O54512 EXPRESSION TAG SEQADV 5KVQ GLY A -2 UNP O54512 EXPRESSION TAG SEQADV 5KVQ SER A -1 UNP O54512 EXPRESSION TAG SEQADV 5KVQ HIS A 0 UNP O54512 EXPRESSION TAG SEQADV 5KVQ MET B -19 UNP O54512 INITIATING METHIONINE SEQADV 5KVQ GLY B -18 UNP O54512 EXPRESSION TAG SEQADV 5KVQ SER B -17 UNP O54512 EXPRESSION TAG SEQADV 5KVQ SER B -16 UNP O54512 EXPRESSION TAG SEQADV 5KVQ HIS B -15 UNP O54512 EXPRESSION TAG SEQADV 5KVQ HIS B -14 UNP O54512 EXPRESSION TAG SEQADV 5KVQ HIS B -13 UNP O54512 EXPRESSION TAG SEQADV 5KVQ HIS B -12 UNP O54512 EXPRESSION TAG SEQADV 5KVQ HIS B -11 UNP O54512 EXPRESSION TAG SEQADV 5KVQ HIS B -10 UNP O54512 EXPRESSION TAG SEQADV 5KVQ SER B -9 UNP O54512 EXPRESSION TAG SEQADV 5KVQ SER B -8 UNP O54512 EXPRESSION TAG SEQADV 5KVQ GLY B -7 UNP O54512 EXPRESSION TAG SEQADV 5KVQ LEU B -6 UNP O54512 EXPRESSION TAG SEQADV 5KVQ VAL B -5 UNP O54512 EXPRESSION TAG SEQADV 5KVQ PRO B -4 UNP O54512 EXPRESSION TAG SEQADV 5KVQ ARG B -3 UNP O54512 EXPRESSION TAG SEQADV 5KVQ GLY B -2 UNP O54512 EXPRESSION TAG SEQADV 5KVQ SER B -1 UNP O54512 EXPRESSION TAG SEQADV 5KVQ HIS B 0 UNP O54512 EXPRESSION TAG SEQRES 1 A 385 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 385 LEU VAL PRO ARG GLY SER HIS MET PRO SER ALA SER PRO SEQRES 3 A 385 LYS GLN ARG VAL LEU ILE VAL GLY ALA LYS PHE GLY GLU SEQRES 4 A 385 MET TYR LEU ASN ALA PHE MET GLN PRO PRO GLU GLY LEU SEQRES 5 A 385 GLU LEU VAL GLY LEU LEU ALA GLN GLY SER ALA ARG SER SEQRES 6 A 385 ARG GLU LEU ALA HIS ALA PHE GLY ILE PRO LEU TYR THR SEQRES 7 A 385 SER PRO GLU GLN ILE THR GLY MET PRO ASP ILE ALA CYS SEQRES 8 A 385 ILE VAL VAL ARG SER THR VAL ALA GLY GLY ALA GLY THR SEQRES 9 A 385 GLN LEU ALA ARG HIS PHE LEU ALA ARG GLY VAL HIS VAL SEQRES 10 A 385 ILE GLN GLU HIS PRO LEU HIS PRO ASP ASP ILE SER SER SEQRES 11 A 385 LEU GLN THR LEU ALA GLN GLU GLN GLY CYS CYS TYR TRP SEQRES 12 A 385 ILE ASN THR PHE TYR PRO HIS THR ARG ALA GLY ARG THR SEQRES 13 A 385 TRP LEU ARG ASP ALA GLN GLN LEU ARG ARG CYS LEU ALA SEQRES 14 A 385 LYS THR PRO PRO VAL VAL HIS ALA THR THR SER ARG GLN SEQRES 15 A 385 LEU LEU TYR SER THR LEU ASP LEU LEU LEU LEU ALA LEU SEQRES 16 A 385 GLY VAL ASP THR ALA ALA VAL GLU CYS ASP VAL VAL GLY SEQRES 17 A 385 SER PHE SER ASP PHE HIS CYS LEU ARG LEU PHE TRP PRO SEQRES 18 A 385 GLU GLY GLU ALA CYS LEU LEU LEU GLN ARG TYR LEU ASP SEQRES 19 A 385 PRO ASP ASP PRO ASP MET HIS SER LEU ILE MET HIS ARG SEQRES 20 A 385 LEU LEU LEU GLY TRP PRO GLU GLY HIS LEU SER LEU GLU SEQRES 21 A 385 ALA SER TYR GLY PRO VAL ILE TRP SER SER SER LEU PHE SEQRES 22 A 385 VAL ALA ASP HIS GLN GLU ASN ALA HIS SER LEU TYR ARG SEQRES 23 A 385 ARG PRO GLU ILE LEU ARG ASP PRO PRO GLY LEU THR ARG SEQRES 24 A 385 SER ALA ALA PRO LEU SER TRP ARG ASP CYS CYS GLU THR SEQRES 25 A 385 VAL GLY PRO GLU GLY VAL SER TRP LEU LEU HIS GLN LEU SEQRES 26 A 385 ARG SER HIS LEU ALA GLY GLU HIS PRO PRO VAL ALA CYS SEQRES 27 A 385 GLN ASN VAL HIS GLN ILE ALA LEU SER ARG LEU TRP GLN SEQRES 28 A 385 GLN ILE LEU ARG LYS THR GLY ASN ALA GLU ILE ARG ARG SEQRES 29 A 385 LEU THR PRO PRO HIS HIS ASP ARG LEU ALA GLY PHE TYR SEQRES 30 A 385 ASN ASP ASP ASP LYS GLU ALA LEU SEQRES 1 B 385 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 385 LEU VAL PRO ARG GLY SER HIS MET PRO SER ALA SER PRO SEQRES 3 B 385 LYS GLN ARG VAL LEU ILE VAL GLY ALA LYS PHE GLY GLU SEQRES 4 B 385 MET TYR LEU ASN ALA PHE MET GLN PRO PRO GLU GLY LEU SEQRES 5 B 385 GLU LEU VAL GLY LEU LEU ALA GLN GLY SER ALA ARG SER SEQRES 6 B 385 ARG GLU LEU ALA HIS ALA PHE GLY ILE PRO LEU TYR THR SEQRES 7 B 385 SER PRO GLU GLN ILE THR GLY MET PRO ASP ILE ALA CYS SEQRES 8 B 385 ILE VAL VAL ARG SER THR VAL ALA GLY GLY ALA GLY THR SEQRES 9 B 385 GLN LEU ALA ARG HIS PHE LEU ALA ARG GLY VAL HIS VAL SEQRES 10 B 385 ILE GLN GLU HIS PRO LEU HIS PRO ASP ASP ILE SER SER SEQRES 11 B 385 LEU GLN THR LEU ALA GLN GLU GLN GLY CYS CYS TYR TRP SEQRES 12 B 385 ILE ASN THR PHE TYR PRO HIS THR ARG ALA GLY ARG THR SEQRES 13 B 385 TRP LEU ARG ASP ALA GLN GLN LEU ARG ARG CYS LEU ALA SEQRES 14 B 385 LYS THR PRO PRO VAL VAL HIS ALA THR THR SER ARG GLN SEQRES 15 B 385 LEU LEU TYR SER THR LEU ASP LEU LEU LEU LEU ALA LEU SEQRES 16 B 385 GLY VAL ASP THR ALA ALA VAL GLU CYS ASP VAL VAL GLY SEQRES 17 B 385 SER PHE SER ASP PHE HIS CYS LEU ARG LEU PHE TRP PRO SEQRES 18 B 385 GLU GLY GLU ALA CYS LEU LEU LEU GLN ARG TYR LEU ASP SEQRES 19 B 385 PRO ASP ASP PRO ASP MET HIS SER LEU ILE MET HIS ARG SEQRES 20 B 385 LEU LEU LEU GLY TRP PRO GLU GLY HIS LEU SER LEU GLU SEQRES 21 B 385 ALA SER TYR GLY PRO VAL ILE TRP SER SER SER LEU PHE SEQRES 22 B 385 VAL ALA ASP HIS GLN GLU ASN ALA HIS SER LEU TYR ARG SEQRES 23 B 385 ARG PRO GLU ILE LEU ARG ASP PRO PRO GLY LEU THR ARG SEQRES 24 B 385 SER ALA ALA PRO LEU SER TRP ARG ASP CYS CYS GLU THR SEQRES 25 B 385 VAL GLY PRO GLU GLY VAL SER TRP LEU LEU HIS GLN LEU SEQRES 26 B 385 ARG SER HIS LEU ALA GLY GLU HIS PRO PRO VAL ALA CYS SEQRES 27 B 385 GLN ASN VAL HIS GLN ILE ALA LEU SER ARG LEU TRP GLN SEQRES 28 B 385 GLN ILE LEU ARG LYS THR GLY ASN ALA GLU ILE ARG ARG SEQRES 29 B 385 LEU THR PRO PRO HIS HIS ASP ARG LEU ALA GLY PHE TYR SEQRES 30 B 385 ASN ASP ASP ASP LYS GLU ALA LEU HET EDO A 401 10 HET NAP A 402 73 HET EDO B 401 10 HET NAP B 402 73 HETNAM EDO 1,2-ETHANEDIOL HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN EDO ETHYLENE GLYCOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 EDO 2(C2 H6 O2) FORMUL 4 NAP 2(C21 H28 N7 O17 P3) FORMUL 7 HOH *457(H2 O) HELIX 1 AA1 PHE A 17 ASN A 23 1 7 HELIX 2 AA2 ALA A 24 MET A 26 5 3 HELIX 3 AA3 SER A 42 GLY A 53 1 12 HELIX 4 AA4 SER A 59 ILE A 63 5 5 HELIX 5 AA5 SER A 76 GLY A 80 5 5 HELIX 6 AA6 ALA A 82 ARG A 93 1 12 HELIX 7 AA7 HIS A 104 GLY A 119 1 16 HELIX 8 AA8 PHE A 127 HIS A 130 5 4 HELIX 9 AA9 THR A 131 LEU A 148 1 18 HELIX 10 AB1 LEU A 163 GLY A 176 1 14 HELIX 11 AB2 ASP A 178 VAL A 182 5 5 HELIX 12 AB3 SER A 285 THR A 292 1 8 HELIX 13 AB4 THR A 292 ALA A 310 1 19 HELIX 14 AB5 PRO A 315 CYS A 318 5 4 HELIX 15 AB6 GLN A 319 GLY A 338 1 20 HELIX 16 AB7 HIS A 349 ARG A 352 5 4 HELIX 17 AB8 LEU A 353 ASN A 358 1 6 HELIX 18 AB9 PHE B 17 ALA B 24 1 8 HELIX 19 AC1 PHE B 25 GLN B 27 5 3 HELIX 20 AC2 SER B 42 GLY B 53 1 12 HELIX 21 AC3 SER B 59 ILE B 63 5 5 HELIX 22 AC4 SER B 76 GLY B 80 5 5 HELIX 23 AC5 ALA B 82 ARG B 93 1 12 HELIX 24 AC6 HIS B 104 GLY B 119 1 16 HELIX 25 AC7 PHE B 127 HIS B 130 5 4 HELIX 26 AC8 THR B 131 LEU B 148 1 18 HELIX 27 AC9 LEU B 163 GLY B 176 1 14 HELIX 28 AD1 ASP B 178 VAL B 182 5 5 HELIX 29 AD2 SER B 285 THR B 292 1 8 HELIX 30 AD3 THR B 292 ALA B 310 1 19 HELIX 31 AD4 PRO B 315 CYS B 318 5 4 HELIX 32 AD5 GLN B 319 GLY B 338 1 20 HELIX 33 AD6 HIS B 349 ALA B 354 5 6 SHEET 1 AA1 6 LEU A 56 TYR A 57 0 SHEET 2 AA1 6 LEU A 32 LEU A 38 1 N LEU A 37 O TYR A 57 SHEET 3 AA1 6 GLN A 8 VAL A 13 1 N VAL A 10 O GLU A 33 SHEET 4 AA1 6 ILE A 69 ILE A 72 1 O CYS A 71 N LEU A 11 SHEET 5 AA1 6 HIS A 96 GLU A 100 1 O HIS A 96 N ALA A 70 SHEET 6 AA1 6 TYR A 122 ASN A 125 1 O TRP A 123 N GLN A 99 SHEET 1 AA2 8 GLU A 183 SER A 189 0 SHEET 2 AA2 8 PHE A 193 TRP A 200 -1 O ARG A 197 N ASP A 185 SHEET 3 AA2 8 GLY A 203 GLN A 210 -1 O LEU A 207 N LEU A 196 SHEET 4 AA2 8 VAL A 154 THR A 159 1 N ALA A 157 O LEU A 208 SHEET 5 AA2 8 HIS A 226 TRP A 232 -1 O GLY A 231 N VAL A 154 SHEET 6 AA2 8 GLY A 235 LEU A 239 -1 O LEU A 237 N LEU A 230 SHEET 7 AA2 8 VAL A 246 SER A 250 -1 O SER A 249 N HIS A 236 SHEET 8 AA2 8 LEU A 277 SER A 280 -1 O ARG A 279 N VAL A 246 SHEET 1 AA3 2 TYR A 212 LEU A 213 0 SHEET 2 AA3 2 GLU A 341 ILE A 342 1 O GLU A 341 N LEU A 213 SHEET 1 AA4 6 LEU B 56 TYR B 57 0 SHEET 2 AA4 6 LEU B 32 LEU B 38 1 N LEU B 37 O TYR B 57 SHEET 3 AA4 6 GLN B 8 VAL B 13 1 N VAL B 10 O GLU B 33 SHEET 4 AA4 6 ILE B 69 ILE B 72 1 O CYS B 71 N VAL B 13 SHEET 5 AA4 6 HIS B 96 GLU B 100 1 O ILE B 98 N ILE B 72 SHEET 6 AA4 6 TYR B 122 ASN B 125 1 O TRP B 123 N GLN B 99 SHEET 1 AA5 8 GLU B 183 SER B 189 0 SHEET 2 AA5 8 PHE B 193 TRP B 200 -1 O PHE B 199 N GLU B 183 SHEET 3 AA5 8 GLY B 203 GLN B 210 -1 O LEU B 207 N LEU B 196 SHEET 4 AA5 8 VAL B 154 THR B 159 1 N ALA B 157 O LEU B 208 SHEET 5 AA5 8 ARG B 227 TRP B 232 -1 O GLY B 231 N VAL B 154 SHEET 6 AA5 8 GLY B 235 LEU B 239 -1 O LEU B 237 N LEU B 230 SHEET 7 AA5 8 VAL B 246 SER B 250 -1 O SER B 249 N HIS B 236 SHEET 8 AA5 8 LEU B 277 SER B 280 -1 O ARG B 279 N VAL B 246 SHEET 1 AA6 2 TYR B 212 LEU B 213 0 SHEET 2 AA6 2 GLU B 341 ILE B 342 1 O GLU B 341 N LEU B 213 CISPEP 1 HIS A 101 PRO A 102 0 1.11 CISPEP 2 GLY A 244 PRO A 245 0 4.46 CISPEP 3 HIS B 101 PRO B 102 0 1.38 CISPEP 4 GLY B 244 PRO B 245 0 3.36 SITE 1 AC1 7 SER A 251 LEU A 252 PHE A 253 LEU A 271 SITE 2 AC1 7 ARG A 272 ASP A 273 HIS B 350 SITE 1 AC2 29 GLY A 14 ALA A 15 LYS A 16 PHE A 17 SITE 2 AC2 29 ALA A 39 GLN A 40 GLY A 41 SER A 42 SITE 3 AC2 29 ARG A 44 SER A 45 VAL A 73 VAL A 74 SITE 4 AC2 29 ARG A 75 ALA A 82 GLU A 100 HIS A 101 SITE 5 AC2 29 PRO A 102 TYR A 128 HOH A 501 HOH A 510 SITE 6 AC2 29 HOH A 525 HOH A 568 HOH A 569 HOH A 596 SITE 7 AC2 29 HOH A 604 HOH A 645 HOH A 649 HOH A 679 SITE 8 AC2 29 HOH A 687 SITE 1 AC3 7 HIS A 350 SER B 251 LEU B 252 PHE B 253 SITE 2 AC3 7 LEU B 271 ARG B 272 ASP B 273 SITE 1 AC4 29 GLY B 14 ALA B 15 LYS B 16 PHE B 17 SITE 2 AC4 29 ALA B 39 GLN B 40 GLY B 41 SER B 42 SITE 3 AC4 29 ARG B 44 SER B 45 VAL B 73 VAL B 74 SITE 4 AC4 29 ARG B 75 ALA B 82 GLU B 100 HIS B 101 SITE 5 AC4 29 PRO B 102 TYR B 128 HOH B 505 HOH B 554 SITE 6 AC4 29 HOH B 567 HOH B 568 HOH B 594 HOH B 605 SITE 7 AC4 29 HOH B 610 HOH B 634 HOH B 681 HOH B 692 SITE 8 AC4 29 HOH B 693 CRYST1 41.444 148.506 65.006 90.00 95.62 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024129 0.000000 0.002373 0.00000 SCALE2 0.000000 0.006734 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015457 0.00000