HEADER OXIDOREDUCTASE, ISOMERASE 18-JUL-16 5KWF TITLE JOINT X-RAY NEUTRON STRUCTURE OF CHOLESTEROL OXIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHOLESTEROL OXIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CHOD,CHOLESTEROL ISOMERASE; COMPND 5 EC: 1.1.3.6,5.3.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. (STRAIN SA-COO); SOURCE 3 ORGANISM_TAXID: 74576; SOURCE 4 STRAIN: SA-COO; SOURCE 5 GENE: CHOA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE, ISOMERASE EXPDTA X-RAY DIFFRACTION; NEUTRON DIFFRACTION AUTHOR E.GOLDEN,A.VRIELINK,F.MEILLEUR,M.BLAKELEY REVDAT 3 06-MAR-24 5KWF 1 REMARK REVDAT 2 27-SEP-17 5KWF 1 REMARK REVDAT 1 01-FEB-17 5KWF 0 JRNL AUTH E.GOLDEN,L.J.YU,F.MEILLEUR,M.P.BLAKELEY,A.P.DUFF,A.KARTON, JRNL AUTH 2 A.VRIELINK JRNL TITL AN EXTENDED N-H BOND, DRIVEN BY A CONSERVED SECOND-ORDER JRNL TITL 2 INTERACTION, ORIENTS THE FLAVIN N5 ORBITAL IN CHOLESTEROL JRNL TITL 3 OXIDASE. JRNL REF SCI REP V. 7 40517 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28098177 JRNL DOI 10.1038/SREP40517 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 X-RAY DATA. REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 3 NUMBER OF REFLECTIONS : 67641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3376 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.2679 - 4.3172 0.96 2901 150 0.2865 0.3096 REMARK 3 2 4.3172 - 3.4294 0.96 2854 151 0.1703 0.2088 REMARK 3 3 3.4294 - 2.9967 0.96 2849 149 0.1846 0.2057 REMARK 3 4 2.9967 - 2.7231 0.95 2798 149 0.1691 0.1881 REMARK 3 5 2.7231 - 2.5281 0.94 2792 148 0.1536 0.1895 REMARK 3 6 2.5281 - 2.3792 0.94 2768 140 0.1516 0.1837 REMARK 3 7 2.3792 - 2.2601 0.94 2755 144 0.1550 0.2009 REMARK 3 8 2.2601 - 2.1618 0.93 2747 144 0.1581 0.2170 REMARK 3 9 2.1618 - 2.0786 0.93 2704 142 0.1586 0.2086 REMARK 3 10 2.0786 - 2.0069 0.92 2702 143 0.1489 0.1981 REMARK 3 11 2.0069 - 1.9442 0.91 2704 142 0.1392 0.1769 REMARK 3 12 1.9442 - 1.8886 0.91 2687 141 0.1338 0.1668 REMARK 3 13 1.8886 - 1.8389 0.91 2636 139 0.1375 0.1706 REMARK 3 14 1.8389 - 1.7941 0.90 2655 140 0.1355 0.1903 REMARK 3 15 1.7941 - 1.7533 0.89 2620 139 0.1410 0.1767 REMARK 3 16 1.7533 - 1.7160 0.90 2603 136 0.1494 0.2100 REMARK 3 17 1.7160 - 1.6817 0.88 2584 137 0.1682 0.1763 REMARK 3 18 1.6817 - 1.6499 0.89 2637 138 0.1913 0.1987 REMARK 3 19 1.6499 - 1.6205 0.89 2602 137 0.2143 0.2242 REMARK 3 20 1.6205 - 1.5930 0.88 2578 136 0.2552 0.2419 REMARK 3 21 1.5930 - 1.5673 0.88 2569 135 0.3134 0.2728 REMARK 3 22 1.5673 - 1.5432 0.86 2537 133 0.3986 0.4205 REMARK 3 23 1.5432 - 1.5205 0.86 2506 132 0.5062 0.4268 REMARK 3 24 1.5205 - 1.4991 0.84 2477 131 0.5779 0.5266 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 8825 REMARK 3 ANGLE : 1.459 15612 REMARK 3 CHIRALITY : 0.134 585 REMARK 3 PLANARITY : 0.036 1788 REMARK 3 DIHEDRAL : 23.110 2427 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 3 NEUTRON DATA. REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 76.2 REMARK 3 NUMBER OF REFLECTIONS : 17713 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.285 REMARK 3 R VALUE (WORKING SET) : 0.284 REMARK 3 FREE R VALUE : 0.312 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 886 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.6169 - 4.0222 0.94 3511 185 0.2705 0.3207 REMARK 3 2 4.0222 - 3.1925 0.89 3285 172 0.2405 0.2780 REMARK 3 3 3.1925 - 2.7890 0.78 2883 153 0.2627 0.2609 REMARK 3 4 2.7890 - 2.5340 0.70 2566 135 0.3123 0.3288 REMARK 3 5 2.5340 - 2.3523 0.65 2374 125 0.3309 0.3696 REMARK 3 6 2.3523 - 2.2137 0.60 2208 116 0.3531 0.3558 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KWF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222060. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67641 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.499 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 230 REMARK 230 EXPERIMENTAL DETAILS REMARK 230 EXPERIMENT TYPE : NEUTRON DIFFRACTION REMARK 230 DATE OF DATA COLLECTION : 01-JUN-13 REMARK 230 TEMPERATURE (KELVIN) : 293.0 REMARK 230 PH : NULL REMARK 230 NUMBER OF CRYSTALS USED : 1 REMARK 230 REMARK 230 NEUTRON SOURCE : NUCLEAR REACTOR REMARK 230 BEAMLINE : CG4D REMARK 230 WAVELENGTH OR RANGE (A) : 2.8-4.3 REMARK 230 MONOCHROMATOR : NULL REMARK 230 OPTICS : NULL REMARK 230 REMARK 230 DETECTOR TYPE : IMAGE PLATE REMARK 230 DETECTOR MANUFACTURER : MAATEL IMAGINE REMARK 230 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 230 DATA SCALING SOFTWARE : SCALA REMARK 230 REMARK 230 NUMBER OF UNIQUE REFLECTIONS : 17714 REMARK 230 RESOLUTION RANGE HIGH (A) : 2.192 REMARK 230 RESOLUTION RANGE LOW (A) : 61.593 REMARK 230 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 230 REMARK 230 OVERALL. REMARK 230 COMPLETENESS FOR RANGE (%) : 76.7 REMARK 230 DATA REDUNDANCY : 4.000 REMARK 230 R MERGE (I) : 0.25800 REMARK 230 R SYM (I) : 0.25800 REMARK 230 FOR THE DATA SET : 4.0000 REMARK 230 REMARK 230 IN THE HIGHEST RESOLUTION SHELL. REMARK 230 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 230 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 230 COMPLETENESS FOR SHELL (%) : 61.1 REMARK 230 DATA REDUNDANCY IN SHELL : 3.30 REMARK 230 R MERGE FOR SHELL (I) : 0.34900 REMARK 230 R SYM FOR SHELL (I) : NULL REMARK 230 FOR SHELL : 1.900 REMARK 230 REMARK 230 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 230 SOFTWARE USED : PHASER REMARK 230 STARTING MODEL: NULL REMARK 230 REMARK 230 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7% PEG 8000, 100MM MNSO4, 100MM REMARK 280 CACODYLIC ACID PH 5.2, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.04200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 6 REMARK 465 ASN A 7 REMARK 465 GLY A 8 REMARK 465 ALA A 508 REMARK 465 SER A 509 REMARK 465 HIS A 510 REMARK 465 HIS A 511 REMARK 465 HIS A 512 REMARK 465 HIS A 513 REMARK 465 HIS A 514 REMARK 465 HIS A 515 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 507 CA C O CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 DH12 ARG A 500 OE1 GLN A 504 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 284 CE1 TYR A 284 CZ -0.081 REMARK 500 CYS A 445 CB CYS A 445 SG -0.105 REMARK 500 GLU A 499 CD GLU A 499 OE2 -0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 137 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 137 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 MET A 154 CG - SD - CE ANGL. DEV. = 10.9 DEGREES REMARK 500 ASP A 196 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 TYR A 232 CB - CG - CD2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 254 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 254 NE - CZ - NH2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ARG A 328 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 463 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 18 28.12 -141.28 REMARK 500 ASN A 46 17.13 -141.73 REMARK 500 ASP A 62 -159.89 -143.71 REMARK 500 ARG A 146 -50.59 -125.88 REMARK 500 SER A 211 -73.53 -139.62 REMARK 500 VAL A 217 -48.98 -170.30 REMARK 500 THR A 231 -98.44 -112.83 REMARK 500 ASN A 353 -6.12 76.52 REMARK 500 CYS A 452 57.75 -145.22 REMARK 500 ASP A 474 -162.78 -118.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 601 DBREF 5KWF A 6 509 UNP P12676 CHOD_STRS0 43 546 SEQADV 5KWF HIS A 510 UNP P12676 EXPRESSION TAG SEQADV 5KWF HIS A 511 UNP P12676 EXPRESSION TAG SEQADV 5KWF HIS A 512 UNP P12676 EXPRESSION TAG SEQADV 5KWF HIS A 513 UNP P12676 EXPRESSION TAG SEQADV 5KWF HIS A 514 UNP P12676 EXPRESSION TAG SEQADV 5KWF HIS A 515 UNP P12676 EXPRESSION TAG SEQRES 1 A 510 ASP ASN GLY GLY TYR VAL PRO ALA VAL VAL ILE GLY THR SEQRES 2 A 510 GLY TYR GLY ALA ALA VAL SER ALA LEU ARG LEU GLY GLU SEQRES 3 A 510 ALA GLY VAL GLN THR LEU MET LEU GLU MET GLY GLN LEU SEQRES 4 A 510 TRP ASN GLN PRO GLY PRO ASP GLY ASN ILE PHE CYS GLY SEQRES 5 A 510 MET LEU ASN PRO ASP LYS ARG SER SER TRP PHE LYS ASN SEQRES 6 A 510 ARG THR GLU ALA PRO LEU GLY SER PHE LEU TRP LEU ASP SEQRES 7 A 510 VAL VAL ASN ARG ASN ILE ASP PRO TYR ALA GLY VAL LEU SEQRES 8 A 510 ASP ARG VAL ASN TYR ASP GLN MET SER VAL TYR VAL GLY SEQRES 9 A 510 ARG GLY VAL GLY GLY GLY SER LEU VAL ASN GLY GLY MET SEQRES 10 A 510 ALA VAL GLU PRO LYS ARG SER TYR PHE GLU GLU ILE LEU SEQRES 11 A 510 PRO ARG VAL ASP SER SER GLU MET TYR ASP ARG TYR PHE SEQRES 12 A 510 PRO ARG ALA ASN SER MET LEU ARG VAL ASN HIS ILE ASP SEQRES 13 A 510 THR LYS TRP PHE GLU ASP THR GLU TRP TYR LYS PHE ALA SEQRES 14 A 510 ARG VAL SER ARG GLU GLN ALA GLY LYS ALA GLY LEU GLY SEQRES 15 A 510 THR VAL PHE VAL PRO ASN VAL TYR ASP PHE GLY TYR MET SEQRES 16 A 510 GLN ARG GLU ALA ALA GLY GLU VAL PRO LYS SER ALA LEU SEQRES 17 A 510 ALA THR GLU VAL ILE TYR GLY ASN ASN HIS GLY LYS GLN SEQRES 18 A 510 SER LEU ASP LYS THR TYR LEU ALA ALA ALA LEU GLY THR SEQRES 19 A 510 GLY LYS VAL THR ILE GLN THR LEU HIS GLN VAL LYS THR SEQRES 20 A 510 ILE ARG GLN THR LYS ASP GLY GLY TYR ALA LEU THR VAL SEQRES 21 A 510 GLU GLN LYS ASP THR ASP GLY LYS LEU LEU ALA THR LYS SEQRES 22 A 510 GLU ILE SER CYS ARG TYR LEU PHE LEU GLY ALA GLY SER SEQRES 23 A 510 LEU GLY SER THR GLU LEU LEU VAL ARG ALA ARG ASP THR SEQRES 24 A 510 GLY THR LEU PRO ASN LEU ASN SER GLU VAL GLY ALA GLY SEQRES 25 A 510 TRP GLY PRO ASN GLY ASN ILE MET THR ALA ARG ALA ASN SEQRES 26 A 510 HIS MET TRP ASN PRO THR GLY ALA HIS GLN SER SER ILE SEQRES 27 A 510 PRO ALA LEU GLY ILE ASP ALA TRP ASP ASN SER ASP SER SEQRES 28 A 510 SER VAL PHE ALA GLU ILE ALA PRO MET PRO ALA GLY LEU SEQRES 29 A 510 GLU THR TRP VAL SER LEU TYR LEU ALA ILE THR LYS ASN SEQRES 30 A 510 PRO GLN ARG GLY THR PHE VAL TYR ASP ALA ALA THR ASP SEQRES 31 A 510 ARG ALA LYS LEU ASN TRP THR ARG ASP GLN ASN ALA PRO SEQRES 32 A 510 ALA VAL ASN ALA ALA LYS ALA LEU PHE ASP ARG ILE ASN SEQRES 33 A 510 LYS ALA ASN GLY THR ILE TYR ARG TYR ASP LEU PHE GLY SEQRES 34 A 510 THR GLN LEU LYS ALA PHE ALA ASP ASP PHE CYS TYR HIS SEQRES 35 A 510 PRO LEU GLY GLY CYS VAL LEU GLY LYS ALA THR ASP ASP SEQRES 36 A 510 TYR GLY ARG VAL ALA GLY TYR LYS ASN LEU TYR VAL THR SEQRES 37 A 510 ASP GLY SER LEU ILE PRO GLY SER VAL GLY VAL ASN PRO SEQRES 38 A 510 PHE VAL THR ILE THR ALA LEU ALA GLU ARG ASN VAL GLU SEQRES 39 A 510 ARG ILE ILE LYS GLN ASP VAL THR ALA SER HIS HIS HIS SEQRES 40 A 510 HIS HIS HIS HET FAD A 601 92 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 DOD *258(D2 O) HELIX 1 AA1 GLY A 19 ALA A 32 1 14 HELIX 2 AA2 ASP A 62 SER A 66 5 5 HELIX 3 AA3 SER A 78 ASP A 83 1 6 HELIX 4 AA4 VAL A 84 ASN A 86 5 3 HELIX 5 AA5 GLY A 113 VAL A 118 5 6 HELIX 6 AA6 LYS A 127 LEU A 135 1 9 HELIX 7 AA7 ASP A 139 ARG A 146 1 8 HELIX 8 AA8 ARG A 146 ARG A 156 1 11 HELIX 9 AA9 ASP A 161 THR A 168 1 8 HELIX 10 AB1 TYR A 171 ALA A 184 1 14 HELIX 11 AB2 ASP A 196 ALA A 205 1 10 HELIX 12 AB3 SER A 211 THR A 215 5 5 HELIX 13 AB4 THR A 231 THR A 239 1 9 HELIX 14 AB5 ALA A 289 THR A 304 1 16 HELIX 15 AB6 THR A 402 GLN A 405 5 4 HELIX 16 AB7 ASN A 406 GLY A 425 1 20 HELIX 17 AB8 ASP A 474 ILE A 478 5 5 HELIX 18 AB9 PRO A 486 VAL A 506 1 21 SHEET 1 AA1 6 VAL A 242 GLN A 245 0 SHEET 2 AA1 6 THR A 36 LEU A 39 1 N MET A 38 O GLN A 245 SHEET 3 AA1 6 TYR A 10 ILE A 16 1 N VAL A 15 O LEU A 37 SHEET 4 AA1 6 LEU A 274 LEU A 287 1 O PHE A 286 N VAL A 14 SHEET 5 AA1 6 TYR A 261 LYS A 268 -1 N GLN A 267 O LEU A 275 SHEET 6 AA1 6 HIS A 248 GLN A 255 -1 N LYS A 251 O THR A 264 SHEET 1 AA2 5 VAL A 242 GLN A 245 0 SHEET 2 AA2 5 THR A 36 LEU A 39 1 N MET A 38 O GLN A 245 SHEET 3 AA2 5 TYR A 10 ILE A 16 1 N VAL A 15 O LEU A 37 SHEET 4 AA2 5 LEU A 274 LEU A 287 1 O PHE A 286 N VAL A 14 SHEET 5 AA2 5 LEU A 470 VAL A 472 1 O TYR A 471 N LEU A 287 SHEET 1 AA3 3 LEU A 96 ASN A 100 0 SHEET 2 AA3 3 SER A 105 GLY A 109 -1 O VAL A 108 N ASP A 97 SHEET 3 AA3 3 PHE A 444 CYS A 445 1 O CYS A 445 N TYR A 107 SHEET 1 AA4 6 THR A 188 PHE A 190 0 SHEET 2 AA4 6 LEU A 346 ALA A 350 -1 O GLY A 347 N VAL A 189 SHEET 3 AA4 6 VAL A 358 ALA A 363 -1 O ALA A 360 N ILE A 348 SHEET 4 AA4 6 VAL A 373 THR A 380 -1 O LEU A 377 N GLU A 361 SHEET 5 AA4 6 ASN A 323 ALA A 329 -1 N ILE A 324 O ALA A 378 SHEET 6 AA4 6 ILE A 427 TYR A 428 -1 O ILE A 427 N ALA A 329 SHEET 1 AA5 6 THR A 188 PHE A 190 0 SHEET 2 AA5 6 LEU A 346 ALA A 350 -1 O GLY A 347 N VAL A 189 SHEET 3 AA5 6 VAL A 358 ALA A 363 -1 O ALA A 360 N ILE A 348 SHEET 4 AA5 6 VAL A 373 THR A 380 -1 O LEU A 377 N GLU A 361 SHEET 5 AA5 6 ASN A 323 ALA A 329 -1 N ILE A 324 O ALA A 378 SHEET 6 AA5 6 PHE A 440 ALA A 441 -1 O ALA A 441 N MET A 325 SHEET 1 AA6 2 THR A 387 ASP A 391 0 SHEET 2 AA6 2 ARG A 396 ASN A 400 -1 O LYS A 398 N VAL A 389 SITE 1 AC1 41 GLY A 17 GLY A 19 TYR A 20 GLY A 21 SITE 2 AC1 41 LEU A 39 GLU A 40 MET A 41 TYR A 107 SITE 3 AC1 41 GLY A 109 ARG A 110 GLY A 111 GLY A 114 SITE 4 AC1 41 GLY A 115 ASN A 119 GLY A 120 GLY A 121 SITE 5 AC1 41 MET A 122 ILE A 218 HIS A 248 VAL A 250 SITE 6 AC1 41 GLY A 288 ALA A 289 GLY A 290 TYR A 446 SITE 7 AC1 41 HIS A 447 ASP A 474 GLY A 475 ASN A 485 SITE 8 AC1 41 PRO A 486 PHE A 487 ILE A 490 HOH A 746 SITE 9 AC1 41 DOD A 765 DOD A 766 HOH A 775 HOH A 801 SITE 10 AC1 41 DOD A 833 DOD A 836 DOD A 873 DOD A 887 SITE 11 AC1 41 DOD A 922 CRYST1 51.605 74.084 63.828 90.00 105.21 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019378 0.000000 0.005267 0.00000 SCALE2 0.000000 0.013498 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016236 0.00000